NR1I2 (Loxodonta africana)
Nuclear receptor

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00105 (zf-C4) IPR001628 ENSLAFG00000007829 T303530_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
NR1I2
M03925_2.00
Homo sapiens
RGKKCRNNVRGKKCR

YGMMCYBNNYGMMCY
SELEX
Nitta et al.(2015)
NR1I2_1
0.961 0.843
NR1I2
M05625_2.00
Homo sapiens
VRGTTCRNNSRGKTCRH

DYGAMCYSNNYGAACYB
SELEX
Yin et al.(2017)
NR1I2_eDBD_HT-SELEX
0.961 0.843
NR1I2
M09283_2.00
Homo sapiens
DDRRBTYMDNNRAGKTCAN

NTGAMCTYNNHKRAVYYHH
Misc
Kulakovskiy et al.(2013)
NR1I2_HUMAN.H11MO.0.C
0.961 0.843
NR1I2
M05626_2.00
Homo sapiens
VRGKKCRNNVRGKKCRN

NYGMMCYBNNYGMMCYB
SELEX
Yin et al.(2017)
NR1I2_eDBD_Methyl-HT-SELEX
0.961 0.843
Nr1i2
M09316_2.00
Mus musculus
DDRRBTYMDNNRAGKTCAN

NTGAMCTYNNHKRAVYYHH
Misc
Kulakovskiy et al.(2013)
NR1I2_MOUSE.H11MO.0.C
0.910 0.829
ENSPMAG00000000180
M02403_2.00
Petromyzon marinus
RGKWCRN

NYGWMCY
PBM
Weirauch et al.(2014)
pTH5509
0.906 0.629
VDR
M03363_2.00
Homo sapiens
GRGTTCAYHGRGTTCA

TGAACYCDRTGAACYC
SELEX
Jolma et al.(2013)
VDR_1
0.873 0.614
Vdr
M03429_2.00
Mus musculus
RRGTTCAYHGRGTTCA

TGAACYCDRTGAACYY
SELEX
Jolma et al.(2013)
Vdr_1
0.873 0.614
VDR
M05877_2.00
Homo sapiens
HRRGTTCA

TGAACYYD
SMiLE-seq
Isakova et al.(2017)
VDR
0.873 0.614
VDR
M09269_2.00
Homo sapiens
NRGGKCANNGRGKKCR

YGMMCYCNNTGMCCYN
Misc
Kulakovskiy et al.(2013)
VDR_HUMAN.H11MO.0.A
0.873 0.614
Vdr
M09315_2.00
Mus musculus
NRGGKCANNGRGKKCR

YGMMCYCNNTGMCCYN
Misc
Kulakovskiy et al.(2013)
VDR_MOUSE.H11MO.0.A
0.873 0.614
VDR
M09606_2.00
Homo sapiens
NRRGGTCANNRRGKKCANNN

NNNTGMMCYYNNTGACCYYN
Misc
Heinz et al.(2010)
GM10855-VDR+vitD_GSE22484
0.873 0.614
VDR
M11116_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$VDR_Q3
0.873 0.614
VDR
M11117_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$VDR_Q6_01
0.873 0.614
VDR
M11118_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$VDR_Q6
0.873 0.614
ENSGALG00000028624
M02398_2.00
Gallus gallus
GRGKTCAH

DTGAMCYC
PBM
Weirauch et al.(2014)
pTH6492
0.814 0.629
For this family, TFs with SR scores > 0.745 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSLAFP00000006570 Nuclear receptor 37 107

Links

Other Nuclear receptor family TFs
Other Loxodonta africana TFs

133 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Aan_R009572 Calypte anna Aan_R009572 I 0.875
Afo_R013462 Aptenodytes forsteri Afo_R013462 I 0.865
Alligator_sinensis_CCG006068.1 Alligator sinensis Alligator_sinensis_CCG006068.1 I 0.846
CBG07680 Caenorhabditis briggsae CBG07680 I 0.772
CBN09702 Caenorhabditis brenneri CBN09702 I 0.776
Cmyd_10001928 Chelonia mydas Cmyd_10001928 I 0.847
Cmyd_10006875 Chelonia mydas Cmyd_10006875 I 0.898
CRE15343 Caenorhabditis remanei CRE15343 I 0.772
csin113629 Clonorchis sinensis csin113629 I 0.824
ENSACAG00000001535 Anolis carolinensis ENSACAG00000001535 I 0.825
VDR Anolis carolinensis ENSACAG00000013485 I 0.906
ENSAMEG00000007006 Ailuropoda melanoleuca ENSAMEG00000007006 I 0.961
ENSAMEG00000013706 Ailuropoda melanoleuca ENSAMEG00000013706 I 0.873
ENSAMEG00000015383 Ailuropoda melanoleuca ENSAMEG00000015383 I 0.803
ENSAMXG00000008863 Astyanax mexicanus ENSAMXG00000008863 I 0.928
ENSAMXG00000012991 Astyanax mexicanus ENSAMXG00000012991 I 0.906
ENSAMXG00000019854 Astyanax mexicanus ENSAMXG00000019854 I 0.906
VDR Bos taurus ENSBTAG00000016414 I 0.873
NR1I2 Bos taurus ENSBTAG00000019557 I 0.954
VDR Canis familiaris ENSCAFG00000009103 I 0.873
NR1I2 Canis familiaris ENSCAFG00000011094 I 0.884
ENSCHOG00000008514 Choloepus hoffmanni ENSCHOG00000008514 I 0.873
vdr-a Ciona intestinalis ENSCING00000020740 I 0.944
NR1I2 Callithrix jacchus ENSCJAG00000008854 I 0.961
VDR Callithrix jacchus ENSCJAG00000015018 I 0.873
ENSCPOG00000006025 Cavia porcellus ENSCPOG00000006025 I 0.873
NR1I3 Cavia porcellus ENSCPOG00000015331 I 0.839
NR1I2 Cavia porcellus ENSCPOG00000020161 I 0.910
ENSCSAG00000006576 Chlorocebus sabaeus ENSCSAG00000006576 I 0.873
ENSCSAVG00000001918 Ciona savignyi ENSCSAVG00000001918 I 0.937
nr1i2 Danio rerio ENSDARG00000029766 I 0.951
vdrb Danio rerio ENSDARG00000070721 I 0.906
VDR Dasypus novemcinctus ENSDNOG00000039161 I 0.873
Nr1i2 Dipodomys ordii ENSDORG00000003966 I 0.910
NR1I2 Equus caballus ENSECAG00000008728 I 0.961
VDR Equus caballus ENSECAG00000015822 I 0.873
VDR Erinaceus europaeus ENSEEUG00000011116 I 0.873
NR1I2 Echinops telfairi ENSETEG00000018117 I 0.961
NR1I2 Felis catus ENSFCAG00000006092 I 0.961
VDR Felis catus ENSFCAG00000024594 I 0.873
VDR Homo sapiens ENSG00000111424 D 0.873
NR1I2 Homo sapiens ENSG00000144852 D 0.961
vdra Gasterosteus aculeatus ENSGACG00000004763 I 0.906
vdrb Gasterosteus aculeatus ENSGACG00000007975 I 0.906
ENSGALG00000026166 Gallus gallus ENSGALG00000026166 I 0.875
ENSGALG00000028624 Gallus gallus ENSGALG00000028624 D 0.814
NR1I2 Gorilla gorilla ENSGGOG00000007361 I 0.961
VDR Gorilla gorilla ENSGGOG00000016473 I 0.873
ENSGMOG00000012720 Gadus morhua ENSGMOG00000012720 I 0.908
ENSGMOG00000019451 Gadus morhua ENSGMOG00000019451 I 0.906
ENSLACG00000010334 Latimeria chalumnae ENSLACG00000010334 I 0.934
ENSLACG00000019104 Latimeria chalumnae ENSLACG00000019104 I 0.903
VDR Loxodonta africana ENSLAFG00000006418 I 0.873
ENSLOCG00000005194 Lepisosteus oculatus ENSLOCG00000005194 I 0.906
ENSMEUG00000000113 Macropus eugenii ENSMEUG00000000113 I 0.890
ENSMEUG00000014791 Macropus eugenii ENSMEUG00000014791 I 0.873
VDR Meleagris gallopavo ENSMGAG00000004846 I 0.875
VDR Microcebus murinus ENSMICG00000009017 I 0.873
VDR Myotis lucifugus ENSMLUG00000000912 I 0.873
NR1I2 Myotis lucifugus ENSMLUG00000002877 I 0.957
NR1I2 Macaca mulatta ENSMMUG00000001976 I 0.961
VDR Macaca mulatta ENSMMUG00000006727 I 0.873
ENSMMUP00000008847 Macaca fascicularis ENSMMUP00000008847 I 0.873
ENSMODG00000028774 Monodelphis domestica ENSMODG00000028774 I 0.873
ENSMPUG00000000419 Mustela putorius furo ENSMPUG00000000419 I 0.873
Vdr Mus musculus ENSMUSG00000022479 D 0.873
Nr1i2 Mus musculus ENSMUSG00000022809 D 0.910
ENSNLEG00000005060 Nomascus leucogenys ENSNLEG00000005060 I 0.961
ENSNLEG00000017900 Nomascus leucogenys ENSNLEG00000017900 I 0.873
ENSOARG00000019372 Ovis aries ENSOARG00000019372 I 0.873
NR1I2 Oryctolagus cuniculus ENSOCUG00000006125 I 0.862
VDR Oryctolagus cuniculus ENSOCUG00000027507 I 0.873
VDR Otolemur garnettii ENSOGAG00000005480 I 0.873
NR1I2 Otolemur garnettii ENSOGAG00000006017 I 0.936
ENSONIG00000009200 Oreochromis niloticus ENSONIG00000009200 I 0.906
ENSONIG00000019378 Oreochromis niloticus ENSONIG00000019378 I 0.906
NR1I2 Ochotona princeps ENSOPRG00000010448 I 0.905
vdralpha Oryzias latipes ENSORLG00000001063 I 0.906
vdr Oryzias latipes ENSORLG00000016402 I 0.906
ENSP00000229022-D1 Bos grunniens ENSP00000229022-D1 I 0.873
ENSP00000336528 Macaca fascicularis ENSP00000336528 I 0.961
ENSP00000336528-D1 Bos grunniens ENSP00000336528-D1 I 0.957
ENSPANG00000011327 Papio anubis ENSPANG00000011327 I 0.873
NR1I2 Procavia capensis ENSPCAG00000009674 I 0.987
ENSPFOG00000001655 Poecilia formosa ENSPFOG00000001655 I 0.906
ENSPFOG00000014233 Poecilia formosa ENSPFOG00000014233 I 0.906
ENSPMAG00000000180 Petromyzon marinus ENSPMAG00000000180 D 0.906
ENSPMAG00000003695 Petromyzon marinus ENSPMAG00000003695 I 0.851
ENSPPYG00000004448 Pongo abelii ENSPPYG00000004448 I 0.873
ENSPSIG00000004437 Pelodiscus sinensis ENSPSIG00000004437 I 0.847
ENSPSIG00000018108 Pelodiscus sinensis ENSPSIG00000018108 I 0.898
NR1I2 Pan troglodytes ENSPTRG00000015263 I 0.961
NR1I2 Pteropus vampyrus ENSPVAG00000000884 I 0.947
VDR Pteropus vampyrus ENSPVAG00000011085 I 0.873
Nr1i2 Rattus norvegicus ENSRNOG00000002906 I 0.910
Vdr Rattus norvegicus ENSRNOG00000054420 I 0.873
ENSSHAG00000004437 Sarcophilus harrisii ENSSHAG00000004437 I 0.908
NR1I2 Sus scrofa ENSSSCG00000011890 I 0.957
VDR Sus scrofa ENSSSCG00000020864 I 0.873
ENSSTOG00000003818 Ictidomys tridecemlineatus ENSSTOG00000003818 I 0.795
ENSSTOG00000014988 Ictidomys tridecemlineatus ENSSTOG00000014988 I 0.910
ENSSTOG00000026741 Ictidomys tridecemlineatus ENSSTOG00000026741 I 0.873
VDR Tupaia belangeri ENSTBEG00000005717 I 0.873
VDR Taeniopygia guttata ENSTGUG00000017093 I 0.875
vdra Tetraodon nigroviridis ENSTNIG00000005559 I 0.883
vdrb Tetraodon nigroviridis ENSTNIG00000007031 I 0.906
nr1i2 Tetraodon nigroviridis ENSTNIG00000013932 I 0.821
nr1i2 Takifugu rubripes ENSTRUG00000003245 I 0.752
vdrb Takifugu rubripes ENSTRUG00000011576 I 0.906
vdra Takifugu rubripes ENSTRUG00000011907 I 0.906
ENSTSYG00000003990 Tarsius syrichta ENSTSYG00000003990 I 0.776
ENSTSYG00000010757 Tarsius syrichta ENSTSYG00000010757 I 0.961
VDR Tursiops truncatus ENSTTRG00000012578 I 0.873
ENSXMAG00000004608 Xiphophorus maculatus ENSXMAG00000004608 I 0.906
ENSXMAG00000018707 Xiphophorus maculatus ENSXMAG00000018707 I 0.906
Gfo_R005027 Geospiza fortis Gfo_R005027 I 0.875
Myotis_brandtii_NR1I2_10031787 Myotis brandtii Myotis_brandtii_NR1I2_10031787 I 0.957
Myotis_brandtii_VDR_10022134 Myotis brandtii Myotis_brandtii_VDR_10022134 I 0.873
Ogr03312 Ophisaurus gracilis Ogr03312 I 0.810
Pvit_07440 Pogona vitticeps Pvit_07440 I 0.906
Pvit_09404 Pogona vitticeps Pvit_09404 I 0.836
Pvit_09406 Pogona vitticeps Pvit_09406 I 0.836
Q9DFH3_CHICK Gallus gallus Q9DFH3_CHICK I 0.814
SMU15000518 Schmidtea mediterranea SMU15000518 I 0.846
SNAPOd2T00001873001 Oikopleura dioica SNAPOd2T00001873001 I 0.837
SNAPOd2T00013215001 Oikopleura dioica SNAPOd2T00013215001 I 0.767
SNAPOd2T00013219001 Oikopleura dioica SNAPOd2T00013219001 I 0.767
tetur01g10970 Tetranychus urticae tetur01g10970 I 0.777
nhr-91 Caenorhabditis elegans WBGene00003681 I 0.776
nr1i2.L Xenopus laevis XB-GENE-17336519 I 0.914
vdr Xenopus tropicalis XB-GENE-486505 I 0.883
vdr.S Xenopus laevis XB-GENE-864847 I 0.887
nr1i2.S Xenopus laevis XB-GENE-865343 I 0.914