NR1I2 (Myotis lucifugus)
Nuclear receptor

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00105 (zf-C4) IPR001628 ENSMLUG00000002877 T303722_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
NR1I2
M03925_2.00
Homo sapiens
RGKKCRNNVRGKKCR

YGMMCYBNNYGMMCY
SELEX
Nitta et al.(2015)
NR1I2_1
0.987 0.957
NR1I2
M05625_2.00
Homo sapiens
VRGTTCRNNSRGKTCRH

DYGAMCYSNNYGAACYB
SELEX
Yin et al.(2017)
NR1I2_eDBD_HT-SELEX
0.987 0.957
NR1I2
M09283_2.00
Homo sapiens
DDRRBTYMDNNRAGKTCAN

NTGAMCTYNNHKRAVYYHH
Misc
Kulakovskiy et al.(2013)
NR1I2_HUMAN.H11MO.0.C
0.987 0.957
NR1I2
M05626_2.00
Homo sapiens
VRGKKCRNNVRGKKCRN

NYGMMCYBNNYGMMCYB
SELEX
Yin et al.(2017)
NR1I2_eDBD_Methyl-HT-SELEX
0.987 0.957
Nr1i2
M09316_2.00
Mus musculus
DDRRBTYMDNNRAGKTCAN

NTGAMCTYNNHKRAVYYHH
Misc
Kulakovskiy et al.(2013)
NR1I2_MOUSE.H11MO.0.C
0.965 0.929
ENSPMAG00000000180
M02403_2.00
Petromyzon marinus
RGKWCRN

NYGWMCY
PBM
Weirauch et al.(2014)
pTH5509
0.953 0.671
VDR
M03363_2.00
Homo sapiens
GRGTTCAYHGRGTTCA

TGAACYCDRTGAACYC
SELEX
Jolma et al.(2013)
VDR_1
0.935 0.657
Vdr
M03429_2.00
Mus musculus
RRGTTCAYHGRGTTCA

TGAACYCDRTGAACYY
SELEX
Jolma et al.(2013)
Vdr_1
0.935 0.657
VDR
M05877_2.00
Homo sapiens
HRRGTTCA

TGAACYYD
SMiLE-seq
Isakova et al.(2017)
VDR
0.935 0.657
VDR
M09269_2.00
Homo sapiens
NRGGKCANNGRGKKCR

YGMMCYCNNTGMCCYN
Misc
Kulakovskiy et al.(2013)
VDR_HUMAN.H11MO.0.A
0.935 0.657
Vdr
M09315_2.00
Mus musculus
NRGGKCANNGRGKKCR

YGMMCYCNNTGMCCYN
Misc
Kulakovskiy et al.(2013)
VDR_MOUSE.H11MO.0.A
0.935 0.657
VDR
M09606_2.00
Homo sapiens
NRRGGTCANNRRGKKCANNN

NNNTGMMCYYNNTGACCYYN
Misc
Heinz et al.(2010)
GM10855-VDR+vitD_GSE22484
0.935 0.657
VDR
M11116_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$VDR_Q3
0.935 0.657
VDR
M11117_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$VDR_Q6_01
0.935 0.657
VDR
M11118_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$VDR_Q6
0.935 0.657
ENSGALG00000028624
M02398_2.00
Gallus gallus
GRGKTCAH

DTGAMCYC
PBM
Weirauch et al.(2014)
pTH6492
0.899 0.643
NR1I3
M03924_2.00
Homo sapiens
RGKDYRNNNNRGKKYR

YRMMCYNNNNYRHMCY
SELEX
Nitta et al.(2015)
NR1I3_1
0.776 0.600
NR1I3
M05619_2.00
Homo sapiens
WDAGTTCAH

DTGAACTHW
SELEX
Yin et al.(2017)
NR1I3_FL_HT-SELEX
0.776 0.600
NR1I3
M09281_2.00
Homo sapiens
DRGGTCANNNRAGTTYAN

NTRAACTYNNNTGACCYH
Misc
Kulakovskiy et al.(2013)
NR1I3_HUMAN.H11MO.0.C
0.776 0.600
NR1I3
M05620_2.00
Homo sapiens
WDAGTTCRN

NYGAACTHW
SELEX
Yin et al.(2017)
NR1I3_FL_Methyl-HT-SELEX
0.776 0.600
Nr1i3
M09302_2.00
Mus musculus
DRGGTCANNNRAGTTYAN

NTRAACTYNNNTGACCYH
Misc
Kulakovskiy et al.(2013)
NR1I3_MOUSE.H11MO.0.C
0.749 0.586
For this family, TFs with SR scores > 0.745 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSMLUP00000002614 Nuclear receptor 37 107

Links

Other Nuclear receptor family TFs
Other Myotis lucifugus TFs

213 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
F775_14190 Aegilops tauschii F775_14190 I 0.000
F775_19744 Aegilops tauschii F775_19744 N 0.000
F775_11347 Aegilops tauschii F775_11347 I 0.000
F775_10624 Aegilops tauschii F775_10624 N 0.000
F775_18830 Aegilops tauschii F775_18830 N 0.000
AMTR_s00009p00242790 Amborella trichopoda AMTR_s00009p00242790 I 0.000
GLYMA03G30940 Glycine max GLYMA03G30940 I 0.000
Gorai.001G012400 Gossypium raimondii Gorai.001G012400 I 0.000
MLOC_38470 Hordeum vulgare MLOC_38470 N 0.000
LPERR04G17380 Leersia perrieri LPERR04G17380 N 0.000
LPERR04G17400 Leersia perrieri LPERR04G17400 I 0.000
LPERR08G11070 Leersia perrieri LPERR08G11070 N 0.000
LPERR04G17390 Leersia perrieri LPERR04G17390 N 0.000
cassava8594.m1 Manihot esculenta cassava8594.m1 I 0.000
GSMUA_Achr11G21270_001 Musa acuminata GSMUA_Achr11G21270_001 I 0.000
GSMUA_Achr9G18080_001 Musa acuminata GSMUA_Achr9G18080_001 I 0.000
GSMUA_Achr5G20600_001 Musa acuminata GSMUA_Achr5G20600_001 N 0.000
GSMUA_Achr3G10120_001 Musa acuminata GSMUA_Achr3G10120_001 I 0.000
OBART04G21370 Oryza barthii OBART04G21370 N 0.000
OBART04G21320 Oryza barthii OBART04G21320 N 0.000
OBART01G20350 Oryza barthii OBART01G20350 N 0.000
OB04G28380 Oryza brachyantha OB04G28380 N 0.000
OB01G30110 Oryza brachyantha OB01G30110 N 0.000
OB02G27530 Oryza brachyantha OB02G27530 N 0.000
OB04G28350 Oryza brachyantha OB04G28350 N 0.000
OB04G28390 Oryza brachyantha OB04G28390 N 0.000
ORGLA04G0183900 Oryza glaberrima ORGLA04G0183900 N 0.000
ORGLA11G0077500 Oryza glaberrima ORGLA11G0077500 N 0.000
ORGLA04G0183800 Oryza glaberrima ORGLA04G0183800 N 0.000
OGLUM04G21260 Oryza glumaepatula OGLUM04G21260 N 0.000
OGLUM04G21350 Oryza glumaepatula OGLUM04G21350 N 0.000
OGLUM01G23970 Oryza glumaepatula OGLUM01G23970 N 0.000
BGIOSGA014565 Oryza indica BGIOSGA014565 N 0.000
BGIOSGA014567 Oryza indica BGIOSGA014567 N 0.000
BGIOSGA015472 Oryza indica BGIOSGA015472 N 0.000
BGIOSGA014566 Oryza indica BGIOSGA014566 N 0.000
BGIOSGA003819 Oryza indica BGIOSGA003819 N 0.000
BGIOSGA003821 Oryza indica BGIOSGA003821 N 0.000
OLONG_016958 Oryza longistaminata OLONG_016958 N 0.000
OLONG_016960 Oryza longistaminata OLONG_016960 N 0.000
OLONG_009946 Oryza longistaminata OLONG_009946 N 0.000
OMERI04G17820 Oryza meridionalis OMERI04G17820 N 0.000
OMERI01G18770 Oryza meridionalis OMERI01G18770 N 0.000
OMERI01G18860 Oryza meridionalis OMERI01G18860 N 0.000
OMERI04G17790 Oryza meridionalis OMERI04G17790 N 0.000
ONIVA01G22920 Oryza nivara ONIVA01G22920 N 0.000
ONIVA01G22980 Oryza nivara ONIVA01G22980 N 0.000
ONIVA04G19650 Oryza nivara ONIVA04G19650 N 0.000
ONIVA04G19860 Oryza nivara ONIVA04G19860 N 0.000
OPUNC04G19040 Oryza punctata OPUNC04G19040 N 0.000
OPUNC04G19030 Oryza punctata OPUNC04G19030 N 0.000
ORUFI11G09150 Oryza rufipogon ORUFI11G09150 N 0.000
ORUFI04G22910 Oryza rufipogon ORUFI04G22910 N 0.000
ORUFI04G22890 Oryza rufipogon ORUFI04G22890 N 0.000
ORUFI01G23050 Oryza rufipogon ORUFI01G23050 N 0.000
OS04G0557800 Oryza sativa OS04G0557800 N 0.000
Pavir.Cb00833 Panicum virgatum Pavir.Cb00833 N 0.000
Pavir.Gb01093 Panicum virgatum Pavir.Gb01093 N 0.000
Pavir.J34298 Panicum virgatum Pavir.J34298 N 0.000
PDK_20s1464821g001 Phoenix dactylifera PDK_20s1464821g001 I 0.000
POPTR_0006s13790 Populus trichocarpa POPTR_0006s13790 I 0.000
29739.m003684 Ricinus communis 29739.m003684 I 0.000
SapurV1A.0249s0140 Salix purpurea SapurV1A.0249s0140 I 0.000
Si000845m.g Setaria italica Si000845m.g I 0.000
Si012401m.g Setaria italica Si012401m.g I 0.000
PGSC0003DMG402030621 Solanum tuberosum PGSC0003DMG402030621 I 0.000
Sb06g025020 Sorghum bicolor Sb06g025020 N 0.000
Sb06g025040 Sorghum bicolor Sb06g025040 I 0.000
Sb06g025060 Sorghum bicolor Sb06g025060 I 0.000
TCM_037645 Theobroma cacao TCM_037645 I 0.000
Traes_2AL_4F71A8FB4 Triticum aestivum Traes_2AL_4F71A8FB4 N 0.000
Traes_2DL_099D4CA9B Triticum aestivum Traes_2DL_099D4CA9B N 0.000
TRIUR3_18279 Triticum urartu TRIUR3_18279 N 0.000
TRIUR3_35186 Triticum urartu TRIUR3_35186 N 0.000
TRIUR3_26157 Triticum urartu TRIUR3_26157 N 0.000
GRMZM2G172795 Zea mays GRMZM2G172795 I 0.000
GRMZM5G822829 Zea mays GRMZM5G822829 N 0.000