CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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NR1D1
(
Macaca mulatta
)
Nuclear receptor
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00105 (zf-C4)
IPR001628
ENSMMUG00000002933
T303767_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
NR1D2
M05659_2.00
Homo sapiens
DWWNKRKGTYANTRKGTYRN
NYRACMYANTRACMYMNWWH
SELEX
Yin et al.(2017)
NR1D2_eDBD_HT-SELEX
0.789
0.821
Nr1d2
M09313_2.00
Mus musculus
NVRDVWVTRRGTCANDVDN
NHBHNTGACYYABWBHYBN
Misc
Kulakovskiy et al.(2013)
NR1D2_MOUSE.H11MO.0.A
0.789
0.821
NR1D2
M05660_2.00
Homo sapiens
NWWNBRGGKYAVTRGGKCRN
NYGMCCYABTRMCCYVNWWN
SELEX
Yin et al.(2017)
NR1D2_eDBD_Methyl-HT-SELEX
0.789
0.821
NR1D1
M05605_2.00
Homo sapiens
NWWNTRGGTYASTRGGTCAN
NTGACCYASTRACCYANWWN
SELEX
Yin et al.(2017)
NR1D1_eDBD_HT-SELEX
0.781
0.839
NR1D1
M09276_2.00
Homo sapiens
DRVNMASTGGGNCANDNDN
NHNHNTGNCCCASTKNBYH
Misc
Kulakovskiy et al.(2013)
NR1D1_HUMAN.H11MO.0.B
0.781
0.839
Nr1d1
M09310_2.00
Mus musculus
DRVNMASTGGGNCANDNDN
NHNHNTGNCCCASTKNBYH
Misc
Kulakovskiy et al.(2013)
NR1D1_MOUSE.H11MO.0.A
0.781
0.839
NR1D1
M11136_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$REVERBALPHA_Q6
0.781
0.839
NR1D1
M05606_2.00
Homo sapiens
NAWNKRGGTYAGTRGGTCRN
NYGACCYACTRACCYMNWTN
SELEX
Yin et al.(2017)
NR1D1_eDBD_Methyl-HT-SELEX
0.781
0.839
For this family, TFs with SR scores >
0.745
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSMMUP00000003923
Nuclear receptor
129
185
LLCKVCGDVASGFHYGVHACEGCKGFFRRSIQQNIQYKRCLKNENCSIEEKHVSVAE
Links
Other
Nuclear receptor
family TFs
Other
Macaca mulatta
TFs
153 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy