NR1I3 (Monodelphis domestica)
Nuclear receptor

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00105 (zf-C4) IPR001628 ENSMODG00000005089 T303818_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Nr1i3
M09302_2.00
Mus musculus
DRGGTCANNNRAGTTYAN

NTRAACTYNNNTGACCYH
Misc
Kulakovskiy et al.(2013)
NR1I3_MOUSE.H11MO.0.C
0.983 0.814
NR1I3
M03924_2.00
Homo sapiens
RGKDYRNNNNRGKKYR

YRMMCYNNNNYRHMCY
SELEX
Nitta et al.(2015)
NR1I3_1
0.966 0.800
NR1I3
M05619_2.00
Homo sapiens
WDAGTTCAH

DTGAACTHW
SELEX
Yin et al.(2017)
NR1I3_FL_HT-SELEX
0.966 0.800
NR1I3
M09281_2.00
Homo sapiens
DRGGTCANNNRAGTTYAN

NTRAACTYNNNTGACCYH
Misc
Kulakovskiy et al.(2013)
NR1I3_HUMAN.H11MO.0.C
0.966 0.800
NR1I3
M05620_2.00
Homo sapiens
WDAGTTCRN

NYGAACTHW
SELEX
Yin et al.(2017)
NR1I3_FL_Methyl-HT-SELEX
0.966 0.800
ENSGALG00000028624
M02398_2.00
Gallus gallus
GRGKTCAH

DTGAMCYC
PBM
Weirauch et al.(2014)
pTH6492
0.858 0.686
VDR
M03363_2.00
Homo sapiens
GRGTTCAYHGRGTTCA

TGAACYCDRTGAACYC
SELEX
Jolma et al.(2013)
VDR_1
0.856 0.614
Vdr
M03429_2.00
Mus musculus
RRGTTCAYHGRGTTCA

TGAACYCDRTGAACYY
SELEX
Jolma et al.(2013)
Vdr_1
0.856 0.614
VDR
M05877_2.00
Homo sapiens
HRRGTTCA

TGAACYYD
SMiLE-seq
Isakova et al.(2017)
VDR
0.856 0.614
VDR
M09269_2.00
Homo sapiens
NRGGKCANNGRGKKCR

YGMMCYCNNTGMCCYN
Misc
Kulakovskiy et al.(2013)
VDR_HUMAN.H11MO.0.A
0.856 0.614
Vdr
M09315_2.00
Mus musculus
NRGGKCANNGRGKKCR

YGMMCYCNNTGMCCYN
Misc
Kulakovskiy et al.(2013)
VDR_MOUSE.H11MO.0.A
0.856 0.614
VDR
M09606_2.00
Homo sapiens
NRRGGTCANNRRGKKCANNN

NNNTGMMCYYNNTGACCYYN
Misc
Heinz et al.(2010)
GM10855-VDR+vitD_GSE22484
0.856 0.614
VDR
M11116_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$VDR_Q3
0.856 0.614
VDR
M11117_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$VDR_Q6_01
0.856 0.614
VDR
M11118_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$VDR_Q6
0.856 0.614
ENSPMAG00000000180
M02403_2.00
Petromyzon marinus
RGKWCRN

NYGWMCY
PBM
Weirauch et al.(2014)
pTH5509
0.824 0.600
NR1I2
M03925_2.00
Homo sapiens
RGKKCRNNVRGKKCR

YGMMCYBNNYGMMCY
SELEX
Nitta et al.(2015)
NR1I2_1
0.809 0.600
NR1I2
M05625_2.00
Homo sapiens
VRGTTCRNNSRGKTCRH

DYGAMCYSNNYGAACYB
SELEX
Yin et al.(2017)
NR1I2_eDBD_HT-SELEX
0.809 0.600
NR1I2
M09283_2.00
Homo sapiens
DDRRBTYMDNNRAGKTCAN

NTGAMCTYNNHKRAVYYHH
Misc
Kulakovskiy et al.(2013)
NR1I2_HUMAN.H11MO.0.C
0.809 0.600
NR1I2
M05626_2.00
Homo sapiens
VRGKKCRNNVRGKKCRN

NYGMMCYBNNYGMMCYB
SELEX
Yin et al.(2017)
NR1I2_eDBD_Methyl-HT-SELEX
0.809 0.600
For this family, TFs with SR scores > 0.745 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSMODP00000006263 Nuclear receptor 58 127

Links

Other Nuclear receptor family TFs
Other Monodelphis domestica TFs

148 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
NR1I3 Homo sapiens ENSG00000143257 D 0.966
NR1I2 Homo sapiens ENSG00000144852 D 0.809
ENSGALG00000028624 Gallus gallus ENSGALG00000028624 D 0.858
VDR Homo sapiens ENSG00000111424 D 0.856
Nr1i3 Mus musculus ENSMUSG00000005677 D 0.983
ENSPMAG00000000180 Petromyzon marinus ENSPMAG00000000180 D 0.824
Vdr Mus musculus ENSMUSG00000022479 D 0.856
vdr Oryzias latipes ENSORLG00000016402 I 0.825
NR1I2 Pteropus vampyrus ENSPVAG00000000884 I 0.780
NR1I3 Pteropus vampyrus ENSPVAG00000005540 I 0.985
VDR Pteropus vampyrus ENSPVAG00000011085 I 0.856
Nr1i3 Rattus norvegicus ENSRNOG00000003260 I 0.983
Vdr Rattus norvegicus ENSRNOG00000054420 I 0.856
NR1I3 Sorex araneus ENSSARG00000002684 I 0.979
ENSSHAG00000004437 Sarcophilus harrisii ENSSHAG00000004437 I 0.864
ENSSHAG00000016687 Sarcophilus harrisii ENSSHAG00000016687 I 0.990
NR1I3 Sus scrofa ENSSSCG00000006353 I 0.988
VDR Sus scrofa ENSSSCG00000020864 I 0.856
ENSSTOG00000003818 Ictidomys tridecemlineatus ENSSTOG00000003818 I 0.975
ENSONIG00000009200 Oreochromis niloticus ENSONIG00000009200 I 0.825
NR1I3 Otolemur garnettii ENSOGAG00000013738 I 0.982
NR1I2 Otolemur garnettii ENSOGAG00000006017 I 0.891
NR6A1 Pan troglodytes ENSPTRG00000021357 I 0.793
NR1I2 Pan troglodytes ENSPTRG00000015263 I 0.809
ENSPANG00000011327 Papio anubis ENSPANG00000011327 I 0.856
vdralpha Oryzias latipes ENSORLG00000001063 I 0.825
ENSPSIG00000004437 Pelodiscus sinensis ENSPSIG00000004437 I 0.899
ENSPANG00000014194 Papio anubis ENSPANG00000014194 I 0.964
NR1I3 Procavia capensis ENSPCAG00000013933 I 0.986
ENSPFOG00000001655 Poecilia formosa ENSPFOG00000001655 I 0.825
ENSPFOG00000014233 Poecilia formosa ENSPFOG00000014233 I 0.825
NR1I3 Ochotona princeps ENSOPRG00000003455 I 0.986
ENSPMAG00000003695 Petromyzon marinus ENSPMAG00000003695 I 0.840
ENSPMAG00000008742 Petromyzon marinus ENSPMAG00000008742 I 0.751
ENSPPYG00000004448 Pongo abelii ENSPPYG00000004448 I 0.856
ENSONIG00000019378 Oreochromis niloticus ENSONIG00000019378 I 0.819
ENSPSIG00000018108 Pelodiscus sinensis ENSPSIG00000018108 I 0.820
NR1I3 Pan troglodytes ENSPTRG00000001582 I 0.966
ENSSTOG00000026741 Ictidomys tridecemlineatus ENSSTOG00000026741 I 0.856
VDR Tupaia belangeri ENSTBEG00000005717 I 0.856
nr1i2.S Xenopus laevis XB-GENE-865343 I 0.903
Cmyd_10001928 Chelonia mydas Cmyd_10001928 I 0.897
Cmyd_10006875 Chelonia mydas Cmyd_10006875 I 0.820
ENSMMUP00000008847 Macaca fascicularis ENSMMUP00000008847 I 0.856
ENSP00000229022-D1 Bos grunniens ENSP00000229022-D1 I 0.856
ENSP00000336528 Macaca fascicularis ENSP00000336528 I 0.809
ENSP00000356959-D1 Bos grunniens ENSP00000356959-D1 I 0.988
ENSP00000356959 Macaca fascicularis ENSP00000356959 I 0.964
Gfo_R005027 Geospiza fortis Gfo_R005027 I 0.858
Myotis_brandtii_NR1I2_10031787 Myotis brandtii Myotis_brandtii_NR1I2_10031787 I 0.793
Myotis_brandtii_VDR_10022134 Myotis brandtii Myotis_brandtii_VDR_10022134 I 0.856
Ogr03312 Ophisaurus gracilis Ogr03312 I 0.920
Pvit_07440 Pogona vitticeps Pvit_07440 I 0.815
Pvit_09404 Pogona vitticeps Pvit_09404 I 0.921
Pvit_09406 Pogona vitticeps Pvit_09406 I 0.921
nr1i2.L Xenopus laevis XB-GENE-17336519 I 0.893
vdr Xenopus tropicalis XB-GENE-486505 I 0.783
Alligator_sinensis_CCG006068.1 Alligator sinensis Alligator_sinensis_CCG006068.1 I 0.856
Afo_R013462 Aptenodytes forsteri Afo_R013462 I 0.862
VDR Taeniopygia guttata ENSTGUG00000017093 I 0.859
vdra Tetraodon nigroviridis ENSTNIG00000005559 I 0.746
vdrb Tetraodon nigroviridis ENSTNIG00000007031 I 0.825
vdrb Takifugu rubripes ENSTRUG00000011576 I 0.825
vdra Takifugu rubripes ENSTRUG00000011907 I 0.825
ENSTSYG00000003712 Tarsius syrichta ENSTSYG00000003712 I 0.949
ENSTSYG00000003990 Tarsius syrichta ENSTSYG00000003990 I 0.787
ENSTSYG00000010757 Tarsius syrichta ENSTSYG00000010757 I 0.809
NR1I3 Tursiops truncatus ENSTTRG00000009227 I 0.868
VDR Tursiops truncatus ENSTTRG00000012578 I 0.856
ENSXMAG00000004608 Xiphophorus maculatus ENSXMAG00000004608 I 0.825
ENSXMAG00000018707 Xiphophorus maculatus ENSXMAG00000018707 I 0.825
HelroG108893 Helobdella robusta HelroG108893 I 0.764
NEMVEDRAFT_v1g165424 Nematostella vectensis NEMVEDRAFT_v1g165424 I 0.840
Q9DFH3_CHICK Gallus gallus Q9DFH3_CHICK I 0.858
Aan_R009572 Calypte anna Aan_R009572 I 0.859
vdr.S Xenopus laevis XB-GENE-864847 I 0.783
VDR Otolemur garnettii ENSOGAG00000005480 I 0.856
VDR Anolis carolinensis ENSACAG00000013485 I 0.815
ENSCSAG00000006576 Chlorocebus sabaeus ENSCSAG00000006576 I 0.856
nr1i2 Danio rerio ENSDARG00000029766 I 0.796
vdrb Danio rerio ENSDARG00000070721 I 0.825
VDR Dasypus novemcinctus ENSDNOG00000039161 I 0.856
NR1I3 Dasypus novemcinctus ENSDNOG00000045179 I 0.987
ENSDORG00000001701 Dipodomys ordii ENSDORG00000001701 I 0.980
NR1I2 Equus caballus ENSECAG00000008728 I 0.809
VDR Equus caballus ENSECAG00000015822 I 0.856
NR1I3 Equus caballus ENSECAG00000020930 I 0.990
NR1I3 Erinaceus europaeus ENSEEUG00000004981 I 0.985
VDR Erinaceus europaeus ENSEEUG00000011116 I 0.856
NR1I2 Echinops telfairi ENSETEG00000018117 I 0.809
NR1I3 Felis catus ENSFCAG00000000497 I 0.987
NR1I2 Felis catus ENSFCAG00000006092 I 0.809
VDR Felis catus ENSFCAG00000024594 I 0.856
ENSCSAG00000002676 Chlorocebus sabaeus ENSCSAG00000002676 I 0.964
NR1I3 Cavia porcellus ENSCPOG00000015331 I 0.966
ENSCPOG00000006025 Cavia porcellus ENSCPOG00000006025 I 0.856
ENSAMEG00000007006 Ailuropoda melanoleuca ENSAMEG00000007006 I 0.809
ENSAMEG00000013706 Ailuropoda melanoleuca ENSAMEG00000013706 I 0.856
ENSAMEG00000015383 Ailuropoda melanoleuca ENSAMEG00000015383 I 0.971
ENSAMXG00000012991 Astyanax mexicanus ENSAMXG00000012991 I 0.824
ENSAMXG00000019854 Astyanax mexicanus ENSAMXG00000019854 I 0.825
NR1I3 Bos taurus ENSBTAG00000009215 I 0.988
VDR Bos taurus ENSBTAG00000016414 I 0.856
VDR Canis familiaris ENSCAFG00000009103 I 0.856
NR1I2 Canis familiaris ENSCAFG00000011094 I 0.889
NR1I3 Canis familiaris ENSCAFG00000012921 I 0.985
ENSCHOG00000008514 Choloepus hoffmanni ENSCHOG00000008514 I 0.856
vdr-a Ciona intestinalis ENSCING00000020740 I 0.766
NR1I3 Callithrix jacchus ENSCJAG00000004783 I 0.964
NR1I2 Callithrix jacchus ENSCJAG00000008854 I 0.809
VDR Callithrix jacchus ENSCJAG00000015018 I 0.856
ENSACAG00000001535 Anolis carolinensis ENSACAG00000001535 I 0.871
vdra Gasterosteus aculeatus ENSGACG00000004763 I 0.825
VDR Myotis lucifugus ENSMLUG00000000912 I 0.856
NR1I2 Myotis lucifugus ENSMLUG00000002877 I 0.793
NR1I2 Macaca mulatta ENSMMUG00000001976 I 0.809
VDR Macaca mulatta ENSMMUG00000006727 I 0.856
NR1I3 Macaca mulatta ENSMMUG00000018128 I 0.964
ENSMODG00000028774 Monodelphis domestica ENSMODG00000028774 I 0.856
ENSMPUG00000000419 Mustela putorius furo ENSMPUG00000000419 I 0.856
ENSMPUG00000014388 Mustela putorius furo ENSMPUG00000014388 I 0.990
ENSNLEG00000005060 Nomascus leucogenys ENSNLEG00000005060 I 0.809
ENSNLEG00000014287 Nomascus leucogenys ENSNLEG00000014287 I 0.966
ENSNLEG00000017900 Nomascus leucogenys ENSNLEG00000017900 I 0.856
ENSOARG00000009965 Ovis aries ENSOARG00000009965 I 0.978
ENSOARG00000019372 Ovis aries ENSOARG00000019372 I 0.856
NR1I2 Oryctolagus cuniculus ENSOCUG00000006125 I 0.776
NR1I3 Oryctolagus cuniculus ENSOCUG00000013537 I 0.988
VDR Oryctolagus cuniculus ENSOCUG00000027507 I 0.856
VDR Microcebus murinus ENSMICG00000009017 I 0.856
NR5A1 Meleagris gallopavo ENSMGAG00000008342 I 0.792
vdrb Gasterosteus aculeatus ENSGACG00000007975 I 0.825
ENSGALG00000026166 Gallus gallus ENSGALG00000026166 I 0.859
NR1I3 Gorilla gorilla ENSGGOG00000005724 I 0.960
NR1I2 Gorilla gorilla ENSGGOG00000007361 I 0.809
VDR Gorilla gorilla ENSGGOG00000016473 I 0.856
ENSGMOG00000012720 Gadus morhua ENSGMOG00000012720 I 0.825
ENSGMOG00000019451 Gadus morhua ENSGMOG00000019451 I 0.825
ENSLACG00000010334 Latimeria chalumnae ENSLACG00000010334 I 0.751
ENSLACG00000019104 Latimeria chalumnae ENSLACG00000019104 I 0.815
NR1I3 Loxodonta africana ENSLAFG00000001180 I 0.986
VDR Loxodonta africana ENSLAFG00000006418 I 0.856
ENSLOCG00000005194 Lepisosteus oculatus ENSLOCG00000005194 I 0.819
ENSMEUG00000000113 Macropus eugenii ENSMEUG00000000113 I 0.850
ENSMEUG00000001987 Macropus eugenii ENSMEUG00000001987 I 0.992
ENSMEUG00000014791 Macropus eugenii ENSMEUG00000014791 I 0.856
VDR Meleagris gallopavo ENSMGAG00000004846 I 0.859
ENSTBEG00000017482 Tupaia belangeri ENSTBEG00000017482 N 0.511