NR1I2 (Oryctolagus cuniculus)
Nuclear receptor

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00105 (zf-C4) IPR001628 ENSOCUG00000006125 T304084_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Nr1i2
M09316_2.00
Mus musculus
DDRRBTYMDNNRAGKTCAN

NTGAMCTYNNHKRAVYYHH
Misc
Kulakovskiy et al.(2013)
NR1I2_MOUSE.H11MO.0.C
0.981 0.929
NR1I2
M03925_2.00
Homo sapiens
RGKKCRNNVRGKKCR

YGMMCYBNNYGMMCY
SELEX
Nitta et al.(2015)
NR1I2_1
0.955 0.929
NR1I2
M05625_2.00
Homo sapiens
VRGTTCRNNSRGKTCRH

DYGAMCYSNNYGAACYB
SELEX
Yin et al.(2017)
NR1I2_eDBD_HT-SELEX
0.955 0.929
NR1I2
M09283_2.00
Homo sapiens
DDRRBTYMDNNRAGKTCAN

NTGAMCTYNNHKRAVYYHH
Misc
Kulakovskiy et al.(2013)
NR1I2_HUMAN.H11MO.0.C
0.955 0.929
NR1I2
M05626_2.00
Homo sapiens
VRGKKCRNNVRGKKCRN

NYGMMCYBNNYGMMCYB
SELEX
Yin et al.(2017)
NR1I2_eDBD_Methyl-HT-SELEX
0.955 0.929
ENSPMAG00000000180
M02403_2.00
Petromyzon marinus
RGKWCRN

NYGWMCY
PBM
Weirauch et al.(2014)
pTH5509
0.896 0.629
VDR
M03363_2.00
Homo sapiens
GRGTTCAYHGRGTTCA

TGAACYCDRTGAACYC
SELEX
Jolma et al.(2013)
VDR_1
0.860 0.600
Vdr
M03429_2.00
Mus musculus
RRGTTCAYHGRGTTCA

TGAACYCDRTGAACYY
SELEX
Jolma et al.(2013)
Vdr_1
0.860 0.600
VDR
M05877_2.00
Homo sapiens
HRRGTTCA

TGAACYYD
SMiLE-seq
Isakova et al.(2017)
VDR
0.860 0.600
VDR
M09269_2.00
Homo sapiens
NRGGKCANNGRGKKCR

YGMMCYCNNTGMCCYN
Misc
Kulakovskiy et al.(2013)
VDR_HUMAN.H11MO.0.A
0.860 0.600
Vdr
M09315_2.00
Mus musculus
NRGGKCANNGRGKKCR

YGMMCYCNNTGMCCYN
Misc
Kulakovskiy et al.(2013)
VDR_MOUSE.H11MO.0.A
0.860 0.600
VDR
M09606_2.00
Homo sapiens
NRRGGTCANNRRGKKCANNN

NNNTGMMCYYNNTGACCYYN
Misc
Heinz et al.(2010)
GM10855-VDR+vitD_GSE22484
0.860 0.600
VDR
M11116_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$VDR_Q3
0.860 0.600
VDR
M11117_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$VDR_Q6_01
0.860 0.600
VDR
M11118_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$VDR_Q6
0.860 0.600
ENSGALG00000028624
M02398_2.00
Gallus gallus
GRGKTCAH

DTGAMCYC
PBM
Weirauch et al.(2014)
pTH6492
0.775 0.600
Nr2f6
M00811_2.00
Mus musculus
NRRGGTCANN

NNTGACCYYN
PBM
Weirauch et al.(2013)
pTH2193
0.746 0.514
Nr2f6
M03419_2.00
Mus musculus
RAGGTCAADAGGTCA

TGACCTHTTGACCTY
SELEX
Jolma et al.(2013)
Nr2f6_1
0.746 0.514
Nr2f6
M03420_2.00
Mus musculus
RRGGTCAAAGGTCA

TGACCTTTGACCYY
SELEX
Jolma et al.(2013)
Nr2f6_2
0.746 0.514
For this family, TFs with SR scores > 0.745 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSOCUP00000005307 Nuclear receptor 16 86

Links

Other Nuclear receptor family TFs
Other Oryctolagus cuniculus TFs

181 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Vdr Mus musculus ENSMUSG00000022479 D 0.860
ENSGALG00000028624 Gallus gallus ENSGALG00000028624 D 0.775
ENSPMAG00000000180 Petromyzon marinus ENSPMAG00000000180 D 0.896
NR1I2 Homo sapiens ENSG00000144852 D 0.955
VDR Homo sapiens ENSG00000111424 D 0.860
Nr2f6 Mus musculus ENSMUSG00000002393 D 0.746
Nr1i2 Mus musculus ENSMUSG00000022809 D 0.981
ENSTSYG00000010757 Tarsius syrichta ENSTSYG00000010757 I 0.955
ENSTSYG00000003990 Tarsius syrichta ENSTSYG00000003990 I 0.746
vdra Takifugu rubripes ENSTRUG00000011907 I 0.896
ENSXMAG00000018707 Xiphophorus maculatus ENSXMAG00000018707 I 0.896
vdrb Takifugu rubripes ENSTRUG00000011576 I 0.896
nr1i2 Takifugu rubripes ENSTRUG00000003245 I 0.837
VDR Tursiops truncatus ENSTTRG00000012578 I 0.860
ENSXMAG00000003990 Xiphophorus maculatus ENSXMAG00000003990 I 0.781
ENSXMAG00000004608 Xiphophorus maculatus ENSXMAG00000004608 I 0.896
Cmyd_10001928 Chelonia mydas Cmyd_10001928 I 0.807
Alligator_sinensis_CCG006068.1 Alligator sinensis Alligator_sinensis_CCG006068.1 I 0.812
Alligator_sinensis_CCG005392.1 Alligator sinensis Alligator_sinensis_CCG005392.1 I 0.746
Afo_R013462 Aptenodytes forsteri Afo_R013462 I 0.866
Aan_R009572 Calypte anna Aan_R009572 I 0.862
WBGene00245913 Onchocerca volvulus WBGene00245913 I 0.752
nhr-8 Caenorhabditis elegans WBGene00003607 I 0.783
Q9DFH3_CHICK Gallus gallus Q9DFH3_CHICK I 0.775
LOAG_16842 Loa loa LOAG_16842 I 0.752
nr1i2 Tetraodon nigroviridis ENSTNIG00000013932 I 0.895
vdrb Tetraodon nigroviridis ENSTNIG00000007031 I 0.896
Nr1i2 Rattus norvegicus ENSRNOG00000002906 I 0.981
VDR Pteropus vampyrus ENSPVAG00000011085 I 0.860
NR1I3 Pteropus vampyrus ENSPVAG00000005540 I 0.772
NR1I2 Pteropus vampyrus ENSPVAG00000000884 I 0.929
NR1I2 Pan troglodytes ENSPTRG00000015263 I 0.955
ENSPSIG00000018108 Pelodiscus sinensis ENSPSIG00000018108 I 0.899
ENSPSIG00000004437 Pelodiscus sinensis ENSPSIG00000004437 I 0.813
ENSPPYG00000004448 Pongo abelii ENSPPYG00000004448 I 0.860
ENSPMAG00000003695 Petromyzon marinus ENSPMAG00000003695 I 0.836
Vdr Rattus norvegicus ENSRNOG00000054420 I 0.860
NR1I3 Sorex araneus ENSSARG00000002684 I 0.831
vdra Tetraodon nigroviridis ENSTNIG00000005559 I 0.834
VDR Taeniopygia guttata ENSTGUG00000017093 I 0.862
ENSSTOG00000026741 Ictidomys tridecemlineatus ENSSTOG00000026741 I 0.860
ENSSTOG00000014988 Ictidomys tridecemlineatus ENSSTOG00000014988 I 0.981
VDR Sus scrofa ENSSSCG00000020864 I 0.860
NR1I2 Sus scrofa ENSSSCG00000011890 I 0.935
NR1I3 Sus scrofa ENSSSCG00000006353 I 0.773
ENSSHAG00000016687 Sarcophilus harrisii ENSSHAG00000016687 I 0.787
ENSSHAG00000004437 Sarcophilus harrisii ENSSHAG00000004437 I 0.927
VDR Tupaia belangeri ENSTBEG00000005717 I 0.860
TMUE_s0008014200 Trichuris muris TMUE_s0008014200 I 0.830
HCOI00910600 Haemonchus contortus HCOI00910600 I 0.770
HCOI00567800 Haemonchus contortus HCOI00567800 I 0.777
HCOI00433800 Haemonchus contortus HCOI00433800 I 0.770
HCOI00283900 Haemonchus contortus HCOI00283900 I 0.771
GPUH_0000103801 Gongylonema pulchrum GPUH_0000103801 I 0.752
EEL_0000192101 Elaeophora elaphi EEL_0000192101 I 0.752
DME_0000391501 Dracunculus medinensis DME_0000391501 I 0.752
D918_02615 Trichuris suis D918_02615 I 0.830
D917_00700 Trichinella nativa D917_00700 I 0.830
HPBE_0002060301 Heligmosomoides bakeri HPBE_0002060301 I 0.783
nAv.1.0.1.g02667 Acanthocheilonema viteae nAv.1.0.1.g02667 I 0.752
TELCIR_16351 Teladorsagia circumcincta TELCIR_16351 I 0.771
TELCIR_04193 Teladorsagia circumcincta TELCIR_04193 I 0.806
TCNE_0001577801 Toxocara canis TCNE_0001577801 I 0.750
TCLT_0000569201 Thelazia callipaeda TCLT_0000569201 I 0.750
OFLC_0000511401 Onchocerca flexuosa OFLC_0000511401 I 0.752
nOo.2.0.1.g07306 Onchocerca ochengi nOo.2.0.1.g07306 I 0.752
nLs.2.1.2.g05295 Litomosoides sigmodontis nLs.2.1.2.g05295 I 0.752
NECAME_11142 Necator americanus NECAME_11142 I 0.768
NBR_0001980401 Nippostrongylus brasiliensis NBR_0001980401 I 0.771
CGOC_0001446101 Cylicostephanus goldi CGOC_0001446101 I 0.827
BTMF_0001180601 Brugia timori BTMF_0001180601 I 0.752
ASU_11275 Ascaris suum ASU_11275 I 0.750
Ogr03312 Ophisaurus gracilis Ogr03312 I 0.866
Myotis_brandtii_VDR_10022134 Myotis brandtii Myotis_brandtii_VDR_10022134 I 0.860
Myotis_brandtii_NR1I2_10031787 Myotis brandtii Myotis_brandtii_NR1I2_10031787 I 0.951
Gfo_R005027 Geospiza fortis Gfo_R005027 I 0.862
ENSP00000356959-D1 Bos grunniens ENSP00000356959-D1 I 0.773
ENSP00000336528 Macaca fascicularis ENSP00000336528 I 0.955
ENSP00000336528-D1 Bos grunniens ENSP00000336528-D1 I 0.935
ENSP00000229022-D1 Bos grunniens ENSP00000229022-D1 I 0.860
ENSMMUP00000008847 Macaca fascicularis ENSMMUP00000008847 I 0.860
Pvit_07440 Pogona vitticeps Pvit_07440 I 0.896
Pvit_09404 Pogona vitticeps Pvit_09404 I 0.881
ANCCAN_22289 Ancylostoma caninum ANCCAN_22289 I 0.827
ANCCAN_11234 Ancylostoma caninum ANCCAN_11234 I 0.768
ACOC_0001278301 Angiostrongylus costaricensis ACOC_0001278301 I 0.772
nr1i2.S Xenopus laevis XB-GENE-865343 I 0.859
vdr.S Xenopus laevis XB-GENE-864847 I 0.876
vdr Xenopus tropicalis XB-GENE-486505 I 0.871
nr1i3 Xenopus tropicalis XB-GENE-479859 I 0.936
nr1i2.L Xenopus laevis XB-GENE-17336519 I 0.859
Pvit_09406 Pogona vitticeps Pvit_09406 I 0.881
Cmyd_10006875 Chelonia mydas Cmyd_10006875 I 0.899
ENSPFOG00000014233 Poecilia formosa ENSPFOG00000014233 I 0.896
vdrb Gasterosteus aculeatus ENSGACG00000007975 I 0.896
NR1I3 Dasypus novemcinctus ENSDNOG00000045179 I 0.785
VDR Dasypus novemcinctus ENSDNOG00000039161 I 0.860
vdrb Danio rerio ENSDARG00000070721 I 0.896
nr1i2 Danio rerio ENSDARG00000029766 I 0.917
ENSCSAVG00000001918 Ciona savignyi ENSCSAVG00000001918 I 0.866
ENSCSAG00000006576 Chlorocebus sabaeus ENSCSAG00000006576 I 0.860
NR1I2 Cavia porcellus ENSCPOG00000020161 I 0.981
ENSCPOG00000006025 Cavia porcellus ENSCPOG00000006025 I 0.860
Nr1i2 Dipodomys ordii ENSDORG00000003966 I 0.981
NR1I2 Equus caballus ENSECAG00000008728 I 0.955
VDR Equus caballus ENSECAG00000015822 I 0.860
vdra Gasterosteus aculeatus ENSGACG00000004763 I 0.896
VDR Felis catus ENSFCAG00000024594 I 0.860
NR1I2 Felis catus ENSFCAG00000006092 I 0.948
NR1I3 Felis catus ENSFCAG00000000497 I 0.761
NR1I2 Echinops telfairi ENSETEG00000018117 I 0.955
VDR Erinaceus europaeus ENSEEUG00000011116 I 0.860
NR1I3 Erinaceus europaeus ENSEEUG00000004981 I 0.758
NR1I3 Equus caballus ENSECAG00000020930 I 0.774
VDR Callithrix jacchus ENSCJAG00000015018 I 0.860
NR1I2 Callithrix jacchus ENSCJAG00000008854 I 0.955
vdr-a Ciona intestinalis ENSCING00000020740 I 0.906
ENSAMEG00000007006 Ailuropoda melanoleuca ENSAMEG00000007006 I 0.948
VDR Anolis carolinensis ENSACAG00000013485 I 0.896
ENSACAG00000001535 Anolis carolinensis ENSACAG00000001535 I 0.778
EFV58098 Trichinella spiralis EFV58098 I 0.830
CRE12534 Caenorhabditis remanei CRE12534 I 0.777
CRE05362 Caenorhabditis remanei CRE05362 I 0.777
CBG05944 Caenorhabditis briggsae CBG05944 I 0.768
Bm2982 Brugia malayi Bm2982 I 0.752
ENSAMEG00000013706 Ailuropoda melanoleuca ENSAMEG00000013706 I 0.860
ENSAMXG00000008863 Astyanax mexicanus ENSAMXG00000008863 I 0.865
ENSAMXG00000012991 Astyanax mexicanus ENSAMXG00000012991 I 0.896
ENSCHOG00000008514 Choloepus hoffmanni ENSCHOG00000008514 I 0.860
NR1I3 Canis familiaris ENSCAFG00000012921 I 0.752
NR1I2 Canis familiaris ENSCAFG00000011094 I 0.948
VDR Canis familiaris ENSCAFG00000009103 I 0.860
NR1I2 Bos taurus ENSBTAG00000019557 I 0.931
VDR Bos taurus ENSBTAG00000016414 I 0.860
NR1I3 Bos taurus ENSBTAG00000009215 I 0.773
ENSAMXG00000019854 Astyanax mexicanus ENSAMXG00000019854 I 0.896
WUBG_00356 Wuchereria bancrofti WUBG_00356 I 0.752
ENSPFOG00000007256 Poecilia formosa ENSPFOG00000007256 I 0.811
NR1I2 Otolemur garnettii ENSOGAG00000006017 I 0.976
VDR Otolemur garnettii ENSOGAG00000005480 I 0.860
VDR Oryctolagus cuniculus ENSOCUG00000027507 I 0.860
NR1I3 Oryctolagus cuniculus ENSOCUG00000013537 I 0.748
ENSOARG00000019372 Ovis aries ENSOARG00000019372 I 0.860
ENSNLEG00000017900 Nomascus leucogenys ENSNLEG00000017900 I 0.860
ENSNLEG00000005060 Nomascus leucogenys ENSNLEG00000005060 I 0.955
ENSMPUG00000014388 Mustela putorius furo ENSMPUG00000014388 I 0.772
ENSONIG00000009200 Oreochromis niloticus ENSONIG00000009200 I 0.896
ENSONIG00000014385 Oreochromis niloticus ENSONIG00000014385 I 0.950
ENSONIG00000019378 Oreochromis niloticus ENSONIG00000019378 I 0.896
ENSPFOG00000001655 Poecilia formosa ENSPFOG00000001655 I 0.896
NR1I3 Procavia capensis ENSPCAG00000013933 I 0.756
NR1I2 Procavia capensis ENSPCAG00000009674 I 0.878
ENSPANG00000011327 Papio anubis ENSPANG00000011327 I 0.860
nr1i2 Oryzias latipes ENSORLG00000017953 I 0.783
vdr Oryzias latipes ENSORLG00000016402 I 0.896
vdralpha Oryzias latipes ENSORLG00000001063 I 0.896
NR1I2 Ochotona princeps ENSOPRG00000010448 I 0.982
ENSMPUG00000000419 Mustela putorius furo ENSMPUG00000000419 I 0.860
ENSMODG00000028774 Monodelphis domestica ENSMODG00000028774 I 0.860
NR1I3 Monodelphis domestica ENSMODG00000005089 I 0.776
VDR Loxodonta africana ENSLAFG00000006418 I 0.860
NR1I3 Loxodonta africana ENSLAFG00000001180 I 0.756
ENSLACG00000019104 Latimeria chalumnae ENSLACG00000019104 I 0.893
ENSLACG00000010334 Latimeria chalumnae ENSLACG00000010334 I 0.881
ENSGMOG00000019451 Gadus morhua ENSGMOG00000019451 I 0.896
ENSGMOG00000012720 Gadus morhua ENSGMOG00000012720 I 0.896
VDR Gorilla gorilla ENSGGOG00000016473 I 0.860
NR1I2 Gorilla gorilla ENSGGOG00000007361 I 0.955
NR1I2 Loxodonta africana ENSLAFG00000007829 I 0.862
ENSLOCG00000005194 Lepisosteus oculatus ENSLOCG00000005194 I 0.896
ENSMEUG00000000113 Macropus eugenii ENSMEUG00000000113 I 0.912
VDR Macaca mulatta ENSMMUG00000006727 I 0.860
NR1I2 Macaca mulatta ENSMMUG00000001976 I 0.955
NR1I2 Myotis lucifugus ENSMLUG00000002877 I 0.951
VDR Myotis lucifugus ENSMLUG00000000912 I 0.860
VDR Microcebus murinus ENSMICG00000009017 I 0.860
VDR Meleagris gallopavo ENSMGAG00000004846 I 0.862
ENSMEUG00000014791 Macropus eugenii ENSMEUG00000014791 I 0.860
ENSMEUG00000001987 Macropus eugenii ENSMEUG00000001987 I 0.791
ENSGALG00000026166 Gallus gallus ENSGALG00000026166 I 0.862
CJA16298 Caenorhabditis japonica CJA16298 N 0.794