NR1I2 (Oryctolagus cuniculus)
Nuclear receptor

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00105 (zf-C4) IPR001628 ENSOCUG00000006125 T304084_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Nr1i2
M09316_2.00
Mus musculus
DDRRBTYMDNNRAGKTCAN

NTGAMCTYNNHKRAVYYHH
Misc
Kulakovskiy et al.(2013)
NR1I2_MOUSE.H11MO.0.C
0.981 0.929
NR1I2
M03925_2.00
Homo sapiens
RGKKCRNNVRGKKCR

YGMMCYBNNYGMMCY
SELEX
Nitta et al.(2015)
NR1I2_1
0.955 0.929
NR1I2
M05625_2.00
Homo sapiens
VRGTTCRNNSRGKTCRH

DYGAMCYSNNYGAACYB
SELEX
Yin et al.(2017)
NR1I2_eDBD_HT-SELEX
0.955 0.929
NR1I2
M09283_2.00
Homo sapiens
DDRRBTYMDNNRAGKTCAN

NTGAMCTYNNHKRAVYYHH
Misc
Kulakovskiy et al.(2013)
NR1I2_HUMAN.H11MO.0.C
0.955 0.929
NR1I2
M05626_2.00
Homo sapiens
VRGKKCRNNVRGKKCRN

NYGMMCYBNNYGMMCYB
SELEX
Yin et al.(2017)
NR1I2_eDBD_Methyl-HT-SELEX
0.955 0.929
ENSPMAG00000000180
M02403_2.00
Petromyzon marinus
RGKWCRN

NYGWMCY
PBM
Weirauch et al.(2014)
pTH5509
0.896 0.629
VDR
M03363_2.00
Homo sapiens
GRGTTCAYHGRGTTCA

TGAACYCDRTGAACYC
SELEX
Jolma et al.(2013)
VDR_1
0.860 0.600
Vdr
M03429_2.00
Mus musculus
RRGTTCAYHGRGTTCA

TGAACYCDRTGAACYY
SELEX
Jolma et al.(2013)
Vdr_1
0.860 0.600
VDR
M05877_2.00
Homo sapiens
HRRGTTCA

TGAACYYD
SMiLE-seq
Isakova et al.(2017)
VDR
0.860 0.600
VDR
M09269_2.00
Homo sapiens
NRGGKCANNGRGKKCR

YGMMCYCNNTGMCCYN
Misc
Kulakovskiy et al.(2013)
VDR_HUMAN.H11MO.0.A
0.860 0.600
Vdr
M09315_2.00
Mus musculus
NRGGKCANNGRGKKCR

YGMMCYCNNTGMCCYN
Misc
Kulakovskiy et al.(2013)
VDR_MOUSE.H11MO.0.A
0.860 0.600
VDR
M09606_2.00
Homo sapiens
NRRGGTCANNRRGKKCANNN

NNNTGMMCYYNNTGACCYYN
Misc
Heinz et al.(2010)
GM10855-VDR+vitD_GSE22484
0.860 0.600
VDR
M11116_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$VDR_Q3
0.860 0.600
VDR
M11117_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$VDR_Q6_01
0.860 0.600
VDR
M11118_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$VDR_Q6
0.860 0.600
ENSGALG00000028624
M02398_2.00
Gallus gallus
GRGKTCAH

DTGAMCYC
PBM
Weirauch et al.(2014)
pTH6492
0.775 0.600
Nr2f6
M00811_2.00
Mus musculus
NRRGGTCANN

NNTGACCYYN
PBM
Weirauch et al.(2013)
pTH2193
0.746 0.514
Nr2f6
M03419_2.00
Mus musculus
RAGGTCAADAGGTCA

TGACCTHTTGACCTY
SELEX
Jolma et al.(2013)
Nr2f6_1
0.746 0.514
Nr2f6
M03420_2.00
Mus musculus
RRGGTCAAAGGTCA

TGACCTTTGACCYY
SELEX
Jolma et al.(2013)
Nr2f6_2
0.746 0.514
For this family, TFs with SR scores > 0.745 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSOCUP00000005307 Nuclear receptor 16 86

Links

Other Nuclear receptor family TFs
Other Oryctolagus cuniculus TFs

181 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
30180.m001071 Ricinus communis 30180.m001071 N 0.000
AMTR_s00002p00019320 Amborella trichopoda AMTR_s00002p00019320 I 0.000
AMTR_s00007p00170710 Amborella trichopoda AMTR_s00007p00170710 I 0.000
Aquca_004_00748 Aquilegia coerulea Aquca_004_00748 I 0.000
Aquca_081_00012 Aquilegia coerulea Aquca_081_00012 I 0.000
BHLH106 Arabidopsis thaliana AT2G41130 N 0.000
Bo3g035410 Brassica oleracea Bo3g035410 N 0.000
Bo4g012960 Brassica oleracea Bo4g012960 N 0.000
Bo4g112750 Brassica oleracea Bo4g112750 N 0.000
Bo4g190700 Brassica oleracea Bo4g190700 N 0.000
Bostr.20505s0075 Boechera stricta Bostr.20505s0075 N 0.000
Bostr.9345s0019 Boechera stricta Bostr.9345s0019 N 0.000
Bra004599 Brassica rapa Bra004599 N 0.000
Bra014672 Brassica rapa Bra014672 N 0.000
Bra016951 Brassica rapa Bra016951 N 0.000
BRADI1G04280 Brachypodium distachyon BRADI1G04280 N 0.000
BRADI2G07050 Brachypodium distachyon BRADI2G07050 N 0.000
Cagra.0578s0007 Capsella grandiflora Cagra.0578s0007 N 0.000
Cagra.1642s0077 Capsella grandiflora Cagra.1642s0077 N 0.000
Carubv10017947m.g Capsella rubella Carubv10017947m.g N 0.000
Carubv10023903m.g Capsella rubella Carubv10023903m.g N 0.000
cassava7163.valid.m1 Manihot esculenta cassava7163.valid.m1 N 0.000
Ca_07159 Cicer arietinum Ca_07159 N 0.000
chr1.CM0816.330.nc Lotus japonicus chr1.CM0816.330.nc N 0.000
Ciclev10012626m.g Citrus clementina Ciclev10012626m.g N 0.000
Cla017413 Citrullus lanatus Cla017413 N 0.000
Cla019977 Citrullus lanatus Cla019977 I 0.000
Cucsa.213230 Cucumis sativus Cucsa.213230 I 0.000
Cucsa.340200 Cucumis sativus Cucsa.340200 N 0.000
Eucgr.A02230 Eucalyptus grandis Eucgr.A02230 N 0.000
Eucgr.E02743 Eucalyptus grandis Eucgr.E02743 I 0.000
evm.TU.supercontig_92.83 Carica papaya evm.TU.supercontig_92.83 N 0.000
F775_10096 Aegilops tauschii F775_10096 I 0.000
gene14814-v1.0-hybrid Fragaria vesca gene14814-v1.0-hybrid N 0.000
GLYMA02G23590 Glycine max GLYMA02G23590 N 0.000
GLYMA03G28150 Glycine max GLYMA03G28150 N 0.000
GLYMA19G30910 Glycine max GLYMA19G30910 N 0.000
Gorai.007G352300 Gossypium raimondii Gorai.007G352300 N 0.000
GRMZM2G027068 Zea mays GRMZM2G027068 N 0.000
GSMUA_Achr8G23980_001 Musa acuminata GSMUA_Achr8G23980_001 N 0.000
LPERR03G32730 Leersia perrieri LPERR03G32730 N 0.000
Lus10018020.g Linum usitatissimum Lus10018020.g N 0.000
Lus10042017.g Linum usitatissimum Lus10042017.g N 0.000
MDP0000138102 Malus domestica MDP0000138102 N 0.000
MDP0000213892 Malus domestica MDP0000213892 N 0.000
mgf009382m Mimulus guttatus mgf009382m N 0.000
MLOC_66385 Hordeum vulgare MLOC_66385 I 0.000
OGLUM03G38250 Oryza glumaepatula OGLUM03G38250 N 0.000
OMERI03G35360 Oryza meridionalis OMERI03G35360 N 0.000
ONIVA03G40100 Oryza nivara ONIVA03G40100 N 0.000
OPUNC03G35590 Oryza punctata OPUNC03G35590 N 0.000
orange1.1g026479m.g Citrus sinensis orange1.1g026479m.g N 0.000
ORGLA03G0352000 Oryza glaberrima ORGLA03G0352000 N 0.000
ORUFI03G40090 Oryza rufipogon ORUFI03G40090 N 0.000
OS03G0811400 Oryza sativa OS03G0811400 N 0.000
Pavir.J02699 Panicum virgatum Pavir.J02699 N 0.000
Pavir.J24868 Panicum virgatum Pavir.J24868 N 0.000
PGSC0003DMG400008378 Solanum tuberosum PGSC0003DMG400008378 N 0.000
PK23387.1 Cannabis sativa PK23387.1 N 0.000
POPTR_0006s03550 Populus trichocarpa POPTR_0006s03550 N 0.000
POPTR_0016s03460 Populus trichocarpa POPTR_0016s03460 N 0.000
PRUPE_ppa011532mg Prunus persica PRUPE_ppa011532mg N 0.000
SapurV1A.0159s0020 Salix purpurea SapurV1A.0159s0020 N 0.000
SapurV1A.0189s0140 Salix purpurea SapurV1A.0189s0140 N 0.000
SapurV1A.1185s0010 Salix purpurea SapurV1A.1185s0010 I 0.000
SapurV1A.1821s0030 Salix purpurea SapurV1A.1821s0030 I 0.000
Sb01g003830 Sorghum bicolor Sb01g003830 N 0.000
scaffold_402920.1 Arabidopsis lyrata scaffold_402920.1 N 0.000
Solyc10g078380.1 Solanum lycopersicum Solyc10g078380.1 N 0.000
TCM_024016 Theobroma cacao TCM_024016 N 0.000
Thhalv10006410m.g Eutrema salsugineum Thhalv10006410m.g N 0.000
Thhalv10017546m.g Eutrema salsugineum Thhalv10017546m.g N 0.000
Traes_4AS_DD16F89E7 Triticum aestivum Traes_4AS_DD16F89E7 I 0.000
Traes_4BL_A2B32FCEE Triticum aestivum Traes_4BL_A2B32FCEE I 0.000
Traes_4DL_7BD3165FB Triticum aestivum Traes_4DL_7BD3165FB I 0.000
Traes_5BL_CBFAD4B59 Triticum aestivum Traes_5BL_CBFAD4B59 N 0.000
TRIUR3_31897 Triticum urartu TRIUR3_31897 I 0.000
VIT_08s0040g01240 Vitis vinifera VIT_08s0040g01240 I 0.000