CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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ENSPMAG00000008742
(
Petromyzon marinus
)
Nuclear receptor
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00105 (zf-C4)
IPR001628
ENSPMAG00000008742
T304497_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
THRB
M03379_2.00
Homo sapiens
DTGACCTBATVAGGTCAN
NTGACCTBATVAGGTCAH
SELEX
Jolma et al.(2013)
THRB_1
0.985
0.743
THRB
M03380_2.00
Homo sapiens
DTGACCTBANTRAGGTCAH
DTGACCTYANTVAGGTCAH
SELEX
Jolma et al.(2013)
THRB_2
0.985
0.743
THRB
M03381_2.00
Homo sapiens
NTGWCCTYADNTRAGGTCAH
DTGACCTYANHTRAGGWCAN
SELEX
Jolma et al.(2013)
THRB_3
0.985
0.743
THRB
M05629_2.00
Homo sapiens
NRGGTCAAAGGTCRN
NYGACCTTTGACCYN
SELEX
Yin et al.(2017)
THRB_eDBD_HT-SELEX_1
0.985
0.743
THRB
M05630_2.00
Homo sapiens
NRRGGTCAYGACCYYN
NRRGGTCRTGACCYYN
SELEX
Yin et al.(2017)
THRB_eDBD_HT-SELEX_2
0.985
0.743
THRB
M05633_2.00
Homo sapiens
NTGWCCTBRNYVAGGWCAN
NTGWCCTBRNYVAGGWCAN
SELEX
Yin et al.(2017)
THRB_FL_HT-SELEX_1
0.985
0.743
THRB
M05634_2.00
Homo sapiens
TRAGGTCABVYVAGGTCAH
DTGACCTBRBVTGACCTYA
SELEX
Yin et al.(2017)
THRB_FL_HT-SELEX_2
0.985
0.743
THRB
M09285_2.00
Homo sapiens
VRVSYVABVKSAGGWCA
TGWCCTSMBVTBRSBYB
Misc
Kulakovskiy et al.(2013)
THB_HUMAN.H11MO.0.C
0.985
0.743
THRB
M11150_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$T3RBETA_Q6_01
0.985
0.743
THRB
M05631_2.00
Homo sapiens
NRGGTYRDRGGKYRN
NYRMCCYHYRACCYN
SELEX
Yin et al.(2017)
THRB_eDBD_Methyl-HT-SELEX_1
0.985
0.743
THRB
M05632_2.00
Homo sapiens
NNRGGTCAYGACCYBN
NVRGGTCRTGACCYNN
SELEX
Yin et al.(2017)
THRB_eDBD_Methyl-HT-SELEX_2
0.985
0.743
THRB
M05635_2.00
Homo sapiens
NTGWCCTBRNYVAGGWCAN
NTGWCCTBRNYVAGGWCAN
SELEX
Yin et al.(2017)
THRB_FL_Methyl-HT-SELEX_1
0.985
0.743
THRB
M05636_2.00
Homo sapiens
YRAGGWCAYGYRAGGWCAH
DTGWCCTYRCRTGWCCTYR
SELEX
Yin et al.(2017)
THRB_FL_Methyl-HT-SELEX_2
0.985
0.743
THRA
M03368_2.00
Homo sapiens
DTGACCTYATVAGGTCAH
DTGACCTBATRAGGTCAH
SELEX
Jolma et al.(2013)
THRA_1
0.974
0.743
THRA
M09275_2.00
Homo sapiens
RGKWSDNNYVAGGWSAN
NTSWCCTBRNNHSWMCY
Misc
Kulakovskiy et al.(2013)
THA_HUMAN.H11MO.0.C
0.974
0.743
Thra
M09333_2.00
Mus musculus
VRGGKCANNYVRGGHCA
TGDCCYBRNNTGMCCYB
Misc
Kulakovskiy et al.(2013)
THA_MOUSE.H11MO.0.C
0.974
0.743
Thra
M09619_2.00
Mus musculus
GGKCANNYVRGGHCA
TGDCCYBRNNTGMCC
Misc
Heinz et al.(2010)
C17.2-THRa_GSE38347
0.974
0.743
THRA
M11135_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$T3RALPHA_Q6
0.974
0.743
GAG_AVIER
M11193_2.00
Avian erythroblastosis virus
VHNTRAGGTCACSSNN
NNSSGTGACCTYANDB
Transfac
Matys et al.(2006)
V$T3R_01
0.973
0.700
Q95WG3_ACRMI
M02424_2.00
Acropora millepora
NRAGGTCAN
NTGACCTYN
PBM
Weirauch et al.(2014)
pTH6144
0.935
0.629
Hr4
M06435_2.00
Drosophila melanogaster
AAGGTCA
TGACCTT
B1H
Zhu et al.(2011)
Hr4_SANGER_5_FBgn0023546
0.926
0.557
Nr2f6
M00811_2.00
Mus musculus
NRRGGTCANN
NNTGACCYYN
PBM
Weirauch et al.(2013)
pTH2193
0.871
0.543
Nr2f6
M03419_2.00
Mus musculus
RAGGTCAADAGGTCA
TGACCTHTTGACCTY
SELEX
Jolma et al.(2013)
Nr2f6_1
0.871
0.543
Nr2f6
M03420_2.00
Mus musculus
RRGGTCAAAGGTCA
TGACCTTTGACCYY
SELEX
Jolma et al.(2013)
Nr2f6_2
0.871
0.543
ENSPMAG00000000180
M02403_2.00
Petromyzon marinus
RGKWCRN
NYGWMCY
PBM
Weirauch et al.(2014)
pTH5509
0.816
0.514
EcR
M06414_2.00
Drosophila melanogaster
RAGGTCAW
WTGACCTY
B1H
Zhu et al.(2011)
EcR_SANGER_5_FBgn0000546
0.806
0.614
ENSGALG00000028624
M02398_2.00
Gallus gallus
GRGKTCAH
DTGAMCYC
PBM
Weirauch et al.(2014)
pTH6492
0.803
0.571
Nr2f2
M00184_2.00
Mus musculus
RRGGTCAN
NTGACCYY
PBM
Badis et al.(2009)
Nr2f2_2192
0.800
0.529
NR2F2
M08157_2.00
Homo sapiens
NNAAGGTCANN
NNTGACCTTNN
ChIP-seq
Mathelier et al.(2014)
MA1111.1
0.800
0.529
NR2F2
M08223_2.00
Homo sapiens
AAAGGTCA
TGACCTTT
ChIP-seq
Contrino et al.(2012)
Mv102
0.800
0.529
NR2F2
M08224_2.00
Homo sapiens
GGKCARAGGB
VCCTYTGMCC
ChIP-seq
Contrino et al.(2012)
Mv104
0.800
0.529
NR2F2
M09293_2.00
Homo sapiens
NARRGGTCADRDN
NHYHTGACCYYTN
Misc
Kulakovskiy et al.(2013)
COT2_HUMAN.H11MO.0.A
0.800
0.529
Nr2f2
M09325_2.00
Mus musculus
NNHRAGGTCANVD
HBNTGACCTYDNN
Misc
Kulakovskiy et al.(2013)
COT2_MOUSE.H11MO.0.A
0.800
0.529
NR2F2
M11180_2.00
Homo sapiens
WRRKKTCAARGGYTCA
TGARCCYTTGAMMYYW
Transfac
Matys et al.(2006)
V$ARP1_01
0.800
0.529
NR2F2
M11181_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$COUPTF2_Q6
0.800
0.529
NR2F6
M02396_2.00
Homo sapiens
NNRGGTCR
YGACCYNN
PBM
Weirauch et al.(2014)
pTH6747
0.800
0.529
NR2F6
M03386_2.00
Homo sapiens
RRGGTCAAAAGGTCA
TGACCTTTTGACCYY
SELEX
Jolma et al.(2013)
NR2F6_1
0.800
0.529
NR2F6
M03387_2.00
Homo sapiens
RRGGTCAAAGGTCA
TGACCTTTGACCYY
SELEX
Jolma et al.(2013)
NR2F6_2
0.800
0.529
NR2F6
M03388_2.00
Homo sapiens
NRGGTCAAAGGTCA
TGACCTTTGACCYN
SELEX
Jolma et al.(2013)
NR2F6_3
0.800
0.529
NR2F6
M05641_2.00
Homo sapiens
RRGGTCAAAGGTCAN
NTGACCTTTGACCYY
SELEX
Yin et al.(2017)
NR2F6_eDBD_HT-SELEX_1
0.800
0.529
NR2F6
M05642_2.00
Homo sapiens
RAGGTCANTGACCTY
RAGGTCANTGACCTY
SELEX
Yin et al.(2017)
NR2F6_eDBD_HT-SELEX_2
0.800
0.529
NR2F6
M05645_2.00
Homo sapiens
NRGGTCARAGGTCRN
NYGACCTYTGACCYN
SELEX
Yin et al.(2017)
NR2F6_FL_HT-SELEX_1
0.800
0.529
NR2F6
M05646_2.00
Homo sapiens
NRGGTCANYGACCYY
RRGGTCRNTGACCYN
SELEX
Yin et al.(2017)
NR2F6_FL_HT-SELEX_2
0.800
0.529
NR2F6
M11153_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$EAR2_Q2
0.800
0.529
NR2F6
M11154_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$EAR2_Q4
0.800
0.529
NR2F6
M05643_2.00
Homo sapiens
RRGGTCAAAGGTCRN
NYGACCTTTGACCYY
SELEX
Yin et al.(2017)
NR2F6_eDBD_Methyl-HT-SELEX_1
0.800
0.529
NR2F6
M05644_2.00
Homo sapiens
RRGGTCRNYGACCYY
RRGGTCRNYGACCYY
SELEX
Yin et al.(2017)
NR2F6_eDBD_Methyl-HT-SELEX_2
0.800
0.529
NR2F6
M05647_2.00
Homo sapiens
NRGGTYADRGGKBRN
NYVMCCYHTRACCYN
SELEX
Yin et al.(2017)
NR2F6_FL_Methyl-HT-SELEX_1
0.800
0.529
NR2F6
M05648_2.00
Homo sapiens
NRGGTCANYGACCYN
NRGGTCRNTGACCYN
SELEX
Yin et al.(2017)
NR2F6_FL_Methyl-HT-SELEX_2
0.800
0.529
nr2f2
M02393_2.00
Danio rerio
NNRGGTCAN
NTGACCYNN
PBM
Weirauch et al.(2014)
pTH5882
0.797
0.529
Nr2f1
M00822_2.00
Mus musculus
DRGGTCRN
NYGACCYH
PBM
Weirauch et al.(2013)
pTH3811
0.797
0.529
NR2F1
M03403_2.00
Homo sapiens
RRGGTCAAAGGTCAN
NTGACCTTTGACCYY
SELEX
Jolma et al.(2013)
NR2F1_1
0.797
0.529
NR2F1
M03404_2.00
Homo sapiens
RRGGTCAARAGGTCAN
NTGACCTYTTGACCYY
SELEX
Jolma et al.(2013)
NR2F1_2
0.797
0.529
NR2F1
M03405_2.00
Homo sapiens
RRGGTCAN
NTGACCYY
SELEX
Jolma et al.(2013)
NR2F1_3
0.797
0.529
NR2F1
M03406_2.00
Homo sapiens
NHRRGGTCANVNG
CNBNTGACCYYDN
SELEX
Jolma et al.(2013)
NR2F1_4
0.797
0.529
NR2F1
M05661_2.00
Homo sapiens
NRGGTCAAAGGTCRN
NYGACCTTTGACCYN
SELEX
Yin et al.(2017)
NR2F1_eDBD_HT-SELEX_1
0.797
0.529
NR2F1
M05662_2.00
Homo sapiens
VRGGTCANYGACCYY
RRGGTCRNTGACCYB
SELEX
Yin et al.(2017)
NR2F1_eDBD_HT-SELEX_2
0.797
0.529
NR2F1
M05665_2.00
Homo sapiens
VRGGTCAAAGGTCAN
NTGACCTTTGACCYB
SELEX
Yin et al.(2017)
NR2F1_FL_HT-SELEX_1
0.797
0.529
NR2F1
M05666_2.00
Homo sapiens
RRGGTCANYGACCYY
RRGGTCRNTGACCYY
SELEX
Yin et al.(2017)
NR2F1_FL_HT-SELEX_2
0.797
0.529
NR2F1
M09291_2.00
Homo sapiens
NRRRBSRRRGGKCANVN
NBNTGMCCYYYSVYYYN
Misc
Kulakovskiy et al.(2013)
COT1_HUMAN.H11MO.0.C
0.797
0.529
Nr2f1
M09334_2.00
Mus musculus
YARAGGTCA
TGACCTYTR
Misc
Kulakovskiy et al.(2013)
COT1_MOUSE.H11MO.0.B
0.797
0.529
NR2F1
M11172_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$COUPTF1_Q6_01
0.797
0.529
NR2F1
M05663_2.00
Homo sapiens
NRGGTCAAAGGTCRN
NYGACCTTTGACCYN
SELEX
Yin et al.(2017)
NR2F1_eDBD_Methyl-HT-SELEX_1
0.797
0.529
NR2F1
M05664_2.00
Homo sapiens
NRGGTCANYGACCYH
DRGGTCRNTGACCYN
SELEX
Yin et al.(2017)
NR2F1_eDBD_Methyl-HT-SELEX_2
0.797
0.529
NR2F1
M05667_2.00
Homo sapiens
NRGGTCAAAGGTCRN
NYGACCTTTGACCYN
SELEX
Yin et al.(2017)
NR2F1_FL_Methyl-HT-SELEX_1
0.797
0.529
NR2F1
M05668_2.00
Homo sapiens
RRGGTCRNYGACCYY
RRGGTCRNYGACCYY
SELEX
Yin et al.(2017)
NR2F1_FL_Methyl-HT-SELEX_2
0.797
0.529
nr1h5.S
M11194_2.00
Xenopus laevis
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$FXRIR1_Q6
0.795
0.600
svp
M06423_2.00
Drosophila melanogaster
ARGGTCA
TGACCYK
B1H
Zhu et al.(2011)
svp_SANGER_5_FBgn0003651
0.788
0.529
Rorc
M09324_2.00
Mus musculus
NDAWSTRRGTCA
TGACYYASWTHN
Misc
Kulakovskiy et al.(2013)
RORG_MOUSE.H11MO.0.B
0.783
0.557
Rorc
M09617_2.00
Mus musculus
AWBTRGGTCA
TGACCYAVWT
Misc
Heinz et al.(2010)
EL4-RORgt.Flag_GSE56019
0.783
0.557
NR1I2
M03925_2.00
Homo sapiens
RGKKCRNNVRGKKCR
YGMMCYBNNYGMMCY
SELEX
Nitta et al.(2015)
NR1I2_1
0.776
0.543
NR1I2
M05625_2.00
Homo sapiens
VRGTTCRNNSRGKTCRH
DYGAMCYSNNYGAACYB
SELEX
Yin et al.(2017)
NR1I2_eDBD_HT-SELEX
0.776
0.543
NR1I2
M09283_2.00
Homo sapiens
DDRRBTYMDNNRAGKTCAN
NTGAMCTYNNHKRAVYYHH
Misc
Kulakovskiy et al.(2013)
NR1I2_HUMAN.H11MO.0.C
0.776
0.543
NR1I2
M05626_2.00
Homo sapiens
VRGKKCRNNVRGKKCRN
NYGMMCYBNNYGMMCYB
SELEX
Yin et al.(2017)
NR1I2_eDBD_Methyl-HT-SELEX
0.776
0.543
Rorb
M00820_2.00
Mus musculus
NRGGTCANN
NNTGACCYN
PBM
Weirauch et al.(2013)
pTH3469
0.767
0.571
rorb
M02404_2.00
Tetraodon nigroviridis
NGAGGTCANN
NNTGACCTCN
PBM
Weirauch et al.(2014)
pTH6589
0.767
0.571
RORB
M05677_2.00
Homo sapiens
DAWNTRGGTYAGTRGGTCAN
NTGACCYACTRACCYANWTH
SELEX
Yin et al.(2017)
RORB_eDBD_HT-SELEX_1
0.767
0.571
RORB
M05678_2.00
Homo sapiens
NAWNKRGGTCAYGACCYMNWTN
NAWNKRGGTCRTGACCYMNWTN
SELEX
Yin et al.(2017)
RORB_eDBD_HT-SELEX_2
0.767
0.571
RORB
M05883_2.00
Homo sapiens
AWNBRGGTCAN
NTGACCYVNWT
SMiLE-seq
Isakova et al.(2017)
RORb
0.767
0.571
RORB
M11187_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$RORBETA_Q2
0.767
0.571
RORB
M05679_2.00
Homo sapiens
DAWBTRGGTYAGTRGGTCRN
NYGACCYACTRACCYAVWTH
SELEX
Yin et al.(2017)
RORB_eDBD_Methyl-HT-SELEX_1
0.767
0.571
RORB
M05680_2.00
Homo sapiens
NAWNKRGGTCAYGACCYMNWTN
NAWNKRGGTCRTGACCYMNWTN
SELEX
Yin et al.(2017)
RORB_eDBD_Methyl-HT-SELEX_2
0.767
0.571
Rora
M00819_2.00
Mus musculus
NNRGGTCA
TGACCYNN
PBM
Weirauch et al.(2013)
pTH3464
0.766
0.571
RORA
M03353_2.00
Homo sapiens
NMRAGGTCAAVYYVAGGTCA
TGACCTBRRBTTGACCTYKN
SELEX
Jolma et al.(2013)
RORA_1
0.766
0.571
RORA
M03354_2.00
Homo sapiens
WAWSTRGGTYASTAGGTCA
TGACCTASTRACCYASWTW
SELEX
Jolma et al.(2013)
RORA_2
0.766
0.571
RORA
M02705_2.00
Homo sapiens
WWVDAGGTCA
TGACCTHBWW
SELEX
Mathelier et al.(2014)
MA0071.1
0.766
0.571
RORA
M02706_2.00
Homo sapiens
NDWAWBTAGGTCAN
NTGACCTAVWTWHN
SELEX
Mathelier et al.(2014)
MA0072.1
0.766
0.571
RORA
M09265_2.00
Homo sapiens
VWNDRGGBCARDR
YHYTGVCCYHNWB
Misc
Kulakovskiy et al.(2013)
RORA_HUMAN.H11MO.0.C
0.766
0.571
Rora
M09327_2.00
Mus musculus
VWNDRGGBCARDR
YHYTGVCCYHNWB
Misc
Kulakovskiy et al.(2013)
RORA_MOUSE.H11MO.0.C
0.766
0.571
RORA
M11090_2.00
Homo sapiens
DWWWVDAGGTCAH
DTGACCTHBWWWH
Transfac
Matys et al.(2006)
V$RORA1_01
0.766
0.571
RORA
M11091_2.00
Homo sapiens
DWAWBTAGGTCAN
NTGACCTAVWTWH
Transfac
Matys et al.(2006)
V$RORA2_01
0.766
0.571
RORA
M11092_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$RORALPHA_Q4
0.766
0.571
RORA
M11093_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$RORA_Q4
0.766
0.571
Q969A9_BOMMO
M02410_2.00
Bombyx mori
VRGGTCDN
NHGACCYB
PBM
Weirauch et al.(2014)
pTH5516
0.759
0.500
VDR
M03363_2.00
Homo sapiens
GRGTTCAYHGRGTTCA
TGAACYCDRTGAACYC
SELEX
Jolma et al.(2013)
VDR_1
0.757
0.471
Vdr
M03429_2.00
Mus musculus
RRGTTCAYHGRGTTCA
TGAACYCDRTGAACYY
SELEX
Jolma et al.(2013)
Vdr_1
0.757
0.471
VDR
M05877_2.00
Homo sapiens
HRRGTTCA
TGAACYYD
SMiLE-seq
Isakova et al.(2017)
VDR
0.757
0.471
VDR
M09269_2.00
Homo sapiens
NRGGKCANNGRGKKCR
YGMMCYCNNTGMCCYN
Misc
Kulakovskiy et al.(2013)
VDR_HUMAN.H11MO.0.A
0.757
0.471
Vdr
M09315_2.00
Mus musculus
NRGGKCANNGRGKKCR
YGMMCYCNNTGMCCYN
Misc
Kulakovskiy et al.(2013)
VDR_MOUSE.H11MO.0.A
0.757
0.471
VDR
M09606_2.00
Homo sapiens
NRRGGTCANNRRGKKCANNN
NNNTGMMCYYNNTGACCYYN
Misc
Heinz et al.(2010)
GM10855-VDR+vitD_GSE22484
0.757
0.471
VDR
M11116_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$VDR_Q3
0.757
0.471
VDR
M11117_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$VDR_Q6_01
0.757
0.471
VDR
M11118_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$VDR_Q6
0.757
0.471
AAEL009588
M02388_2.00
Aedes aegypti
NRGGTCR
YGACCYN
PBM
Weirauch et al.(2014)
pTH5508
0.752
0.571
Hr46
M02406_2.00
Drosophila melanogaster
NRGGTCAN
NTGACCYN
PBM
Weirauch et al.(2014)
pTH6142
0.752
0.571
Hr46
M03926_2.00
Drosophila melanogaster
RGGTCAGTRGGTCA
TGACCYACTGACCY
SELEX
Nitta et al.(2015)
Hr46_1
0.752
0.571
Hr46
M06412_2.00
Drosophila melanogaster
AWKTGGGTYW
WRACCCAMWT
B1H
Zhu et al.(2011)
Hr46_FlyReg_FBgn0000448
0.752
0.571
Hr46
M06413_2.00
Drosophila melanogaster
HWNBAGGTCA
TGACCTVNWD
B1H
Zhu et al.(2011)
Hr46_SANGER_5_FBgn0000448
0.752
0.571
Rxrb
M02402_2.00
Mus musculus
VRGGTCAH
DTGACCYB
PBM
Weirauch et al.(2014)
pTH2861
0.752
0.557
RXRB
M03415_2.00
Homo sapiens
RRGGTCAAAGGTCA
TGACCTTTGACCYY
SELEX
Jolma et al.(2013)
RXRB_1
0.752
0.557
Rxrb
M03435_2.00
Mus musculus
GRGGTCAAAGGTCA
TGACCTTTGACCYC
SELEX
Jolma et al.(2013)
Rxrb_1
0.752
0.557
RXRB
M05681_2.00
Homo sapiens
RRGGTCAAAGGTCAN
NTGACCTTTGACCYY
SELEX
Yin et al.(2017)
RXRB_eDBD_HT-SELEX_1
0.752
0.557
RXRB
M05682_2.00
Homo sapiens
RRGGTCAYGACCYY
RRGGTCRTGACCYY
SELEX
Yin et al.(2017)
RXRB_eDBD_HT-SELEX_2
0.752
0.557
RXRB
M09297_2.00
Homo sapiens
DSAGGTCASD
HSTGACCTSH
Misc
Kulakovskiy et al.(2013)
RXRB_HUMAN.H11MO.0.C
0.752
0.557
Rxrb
M09330_2.00
Mus musculus
DSAGGTCASD
HSTGACCTSH
Misc
Kulakovskiy et al.(2013)
RXRB_MOUSE.H11MO.0.C
0.752
0.557
RXRB
M05683_2.00
Homo sapiens
RRGGTCAAAGGTCRN
NYGACCTTTGACCYY
SELEX
Yin et al.(2017)
RXRB_eDBD_Methyl-HT-SELEX_1
0.752
0.557
RXRB
M05684_2.00
Homo sapiens
RRGGTCRYGACCYY
RRGGTCRYGACCYY
SELEX
Yin et al.(2017)
RXRB_eDBD_Methyl-HT-SELEX_2
0.752
0.557
Rxra
M00181_2.00
Mus musculus
NRRGGTCANN
NNTGACCYYN
PBM
Badis et al.(2009)
Rxra_1035
0.747
0.514
RXRA
M03408_2.00
Homo sapiens
RRGGTCAAAGGTCA
TGACCTTTGACCYY
SELEX
Jolma et al.(2013)
RXRA_1
0.747
0.514
RXRA
M03409_2.00
Homo sapiens
RRGGTCATGACCYY
RRGGTCATGACCYY
SELEX
Jolma et al.(2013)
RXRA_2
0.747
0.514
RXRA
M03410_2.00
Homo sapiens
RRGGTCAAAGGTCA
TGACCTTTGACCYY
SELEX
Jolma et al.(2013)
RXRA_3
0.747
0.514
RXRA
M03411_2.00
Homo sapiens
RRGGTCATGACCYY
RRGGTCATGACCYY
SELEX
Jolma et al.(2013)
RXRA_4
0.747
0.514
Rxra
M03421_2.00
Mus musculus
RRGGTCAAAGGTCA
TGACCTTTGACCYY
SELEX
Jolma et al.(2013)
Rxra_1
0.747
0.514
Rxra
M03422_2.00
Mus musculus
RGGTCATGACCY
RGGTCATGACCY
SELEX
Jolma et al.(2013)
Rxra_2
0.747
0.514
RXRA
M05671_2.00
Homo sapiens
RRGGTCAAAGGTCAN
NTGACCTTTGACCYY
SELEX
Yin et al.(2017)
RXRA_eDBD_HT-SELEX
0.747
0.514
RXRA
M05882_2.00
Homo sapiens
VRGKTBAAAGGTYRH
DYRACCTTTVAMCYB
SMiLE-seq
Isakova et al.(2017)
RXRa
0.747
0.514
RXRA
M07993_2.00
Homo sapiens
NRRGGTCA
TGACCYYN
ChIP-seq
Gerstein et al.(2012)
H1-hESC_RXRA_HudsonAlpha
0.747
0.514
RXRA
M07994_2.00
Homo sapiens
DDNNMRRGGTCANDN
NHNTGACCYYKNNHH
ChIP-seq
Gerstein et al.(2012)
HepG2_RXRA_HudsonAlpha
0.747
0.514
RXRA
M09294_2.00
Homo sapiens
VDDDNDNNVRRRGGKCAVDV
BHBTGMCCYYYBNNHNHHHB
Misc
Kulakovskiy et al.(2013)
RXRA_HUMAN.H11MO.0.A
0.747
0.514
Rxra
M09306_2.00
Mus musculus
DDVNNNNNRAGKTCAAGGYCA
TGRCCTTGAMCTYNNNNNBHH
Misc
Kulakovskiy et al.(2013)
RXRA_MOUSE.H11MO.0.A
0.747
0.514
RXRA
M11182_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$RXRA_07
0.747
0.514
RXRA
M05672_2.00
Homo sapiens
RRGGTCAAAGGTCAH
DTGACCTTTGACCYY
SELEX
Yin et al.(2017)
RXRA_eDBD_Methyl-HT-SELEX
0.747
0.514
Eip78C
M06427_2.00
Drosophila melanogaster
RGGTCA
TGACCY
B1H
Zhu et al.(2011)
Eip78C_SANGER_5_FBgn0004865
0.746
0.629
usp
M03934_2.00
Drosophila melanogaster
ARRGGTCAAAGGTCA
TGACCTTTGACCYYT
SELEX
Nitta et al.(2015)
usp_1
0.745
0.500
usp
M06426_2.00
Drosophila melanogaster
HRRGGTCAH
DTGACCYYD
B1H
Zhu et al.(2011)
usp_SANGER_5_FBgn0003964
0.745
0.500
usp
M02709_2.00
Drosophila melanogaster
GGGGTCACSN
NSGTGACCCC
SELEX
Mathelier et al.(2014)
MA0016.1
0.745
0.500
usp
M09689_2.00
Drosophila melanogaster
KRGGTCACG
CGTGACCYM
Misc
Kulakovskiy et al.(2009)
usp
0.745
0.500
usp
M11191_2.00
Drosophila melanogaster
GRGGTCAYS
SRTGACCYC
Transfac
Matys et al.(2006)
I$CF1_01
0.745
0.500
usp
M11192_2.00
Drosophila melanogaster
GGGGTCAYS
SRTGACCCC
Transfac
Matys et al.(2006)
I$CF1_02
0.745
0.500
For this family, TFs with SR scores >
0.745
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSPMAP00000009647
Nuclear receptor
10
81
QPCAVCGDKATGYHYHCITCEGCKGFFRRTIQKSLHVMYVCKFSETCTVDRINRNQCQECRFKKCLAVGMVT
Links
Other
Nuclear receptor
family TFs
Other
Petromyzon marinus
TFs
1522 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy