Nr1i3 (Rattus norvegicus)
Nuclear receptor

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00105 (zf-C4) IPR001628 ENSRNOG00000003260 T304685_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Nr1i3
M09302_2.00 		Mus musculus
DRGGTCANNNRAGTTYAN
NTRAACTYNNNTGACCYH		 Misc
Kulakovskiy et al.(2013)
NR1I3_MOUSE.H11MO.0.C 		0.994 1.000
NR1I3
M03924_2.00 		Homo sapiens
RGKDYRNNNNRGKKYR
YRMMCYNNNNYRHMCY		 SELEX
Nitta et al.(2015)
NR1I3_1 		0.985 0.886
NR1I3
M05619_2.00 		Homo sapiens
WDAGTTCAH
DTGAACTHW		 SELEX
Yin et al.(2017)
NR1I3_FL_HT-SELEX 		0.985 0.886
NR1I3
M09281_2.00 		Homo sapiens
DRGGTCANNNRAGTTYAN
NTRAACTYNNNTGACCYH		 Misc
Kulakovskiy et al.(2013)
NR1I3_HUMAN.H11MO.0.C 		0.985 0.886
NR1I3
M05620_2.00 		Homo sapiens
WDAGTTCRN
NYGAACTHW		 SELEX
Yin et al.(2017)
NR1I3_FL_Methyl-HT-SELEX 		0.985 0.886
ENSGALG00000028624
M02398_2.00 		Gallus gallus
GRGKTCAH
DTGAMCYC		 PBM
Weirauch et al.(2014)
pTH6492 		0.874 0.657
VDR
M03363_2.00 		Homo sapiens
GRGTTCAYHGRGTTCA
TGAACYCDRTGAACYC		 SELEX
Jolma et al.(2013)
VDR_1 		0.842 0.600
Vdr
M03429_2.00 		Mus musculus
RRGTTCAYHGRGTTCA
TGAACYCDRTGAACYY		 SELEX
Jolma et al.(2013)
Vdr_1 		0.842 0.600
VDR
M05877_2.00 		Homo sapiens
HRRGTTCA
TGAACYYD		 SMiLE-seq
Isakova et al.(2017)
VDR 		0.842 0.600
VDR
M09269_2.00 		Homo sapiens
NRGGKCANNGRGKKCR
YGMMCYCNNTGMCCYN		 Misc
Kulakovskiy et al.(2013)
VDR_HUMAN.H11MO.0.A 		0.842 0.600
Vdr
M09315_2.00 		Mus musculus
NRGGKCANNGRGKKCR
YGMMCYCNNTGMCCYN		 Misc
Kulakovskiy et al.(2013)
VDR_MOUSE.H11MO.0.A 		0.842 0.600
VDR
M09606_2.00 		Homo sapiens
NRRGGTCANNRRGKKCANNN
NNNTGMMCYYNNTGACCYYN		 Misc
Heinz et al.(2010)
GM10855-VDR+vitD_GSE22484 		0.842 0.600
VDR
M11116_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$VDR_Q3 		0.842 0.600
VDR
M11117_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$VDR_Q6_01 		0.842 0.600
VDR
M11118_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$VDR_Q6 		0.842 0.600
ENSPMAG00000000180
M02403_2.00 		Petromyzon marinus
RGKWCRN
NYGWMCY		 PBM
Weirauch et al.(2014)
pTH5509 		0.810 0.586
For this family, TFs with SR scores > 0.745 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSRNOP00000048836 Nuclear receptor 19 88
ENSRNOP00000072813 Nuclear receptor 19 88

Links

Other Nuclear receptor family TFs
Other Rattus norvegicus TFs

133 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Nr1i3 Mus musculus ENSMUSG00000005677 D 0.994
ENSDORG00000001701 Dipodomys ordii ENSDORG00000001701 I 0.992
NR1I3 Otolemur garnettii ENSOGAG00000013738 I 0.992
NR1I3 Procavia capensis ENSPCAG00000013933 I 0.988
NR1I3 Canis familiaris ENSCAFG00000012921 I 0.988
NR1I3 Loxodonta africana ENSLAFG00000001180 I 0.988
NR1I3 Callithrix jacchus ENSCJAG00000004783 I 0.987
NR1I3 Oryctolagus cuniculus ENSOCUG00000013537 I 0.986
NR1I3 Equus caballus ENSECAG00000020930 I 0.986
ENSMPUG00000014388 Mustela putorius furo ENSMPUG00000014388 I 0.986
ENSPANG00000014194 Papio anubis ENSPANG00000014194 I 0.985
ENSNLEG00000014287 Nomascus leucogenys ENSNLEG00000014287 I 0.985
NR1I3 Dasypus novemcinctus ENSDNOG00000045179 I 0.985
NR1I3 Homo sapiens ENSG00000143257 D 0.985
ENSCSAG00000002676 Chlorocebus sabaeus ENSCSAG00000002676 I 0.985
ENSSHAG00000016687 Sarcophilus harrisii ENSSHAG00000016687 I 0.985
NR1I3 Pan troglodytes ENSPTRG00000001582 I 0.985
NR1I3 Macaca mulatta ENSMMUG00000018128 I 0.985
ENSP00000356959 Macaca fascicularis ENSP00000356959 I 0.985
NR1I3 Felis catus ENSFCAG00000000497 I 0.984
ENSMEUG00000001987 Macropus eugenii ENSMEUG00000001987 I 0.984
NR1I3 Sus scrofa ENSSSCG00000006353 I 0.983
NR1I3 Monodelphis domestica ENSMODG00000005089 I 0.983
NR1I3 Gorilla gorilla ENSGGOG00000005724 I 0.983
NR1I3 Erinaceus europaeus ENSEEUG00000004981 I 0.983
ENSP00000356959-D1 Bos grunniens ENSP00000356959-D1 I 0.983
NR1I3 Bos taurus ENSBTAG00000009215 I 0.983
NR1I3 Pteropus vampyrus ENSPVAG00000005540 I 0.983
NR1I3 Ochotona princeps ENSOPRG00000003455 I 0.982
NR1I3 Sorex araneus ENSSARG00000002684 I 0.979
NR1I3 Cavia porcellus ENSCPOG00000015331 I 0.978
ENSTSYG00000003712 Tarsius syrichta ENSTSYG00000003712 I 0.976
ENSSTOG00000003818 Ictidomys tridecemlineatus ENSSTOG00000003818 I 0.975
ENSAMEG00000015383 Ailuropoda melanoleuca ENSAMEG00000015383 I 0.971
ENSOARG00000009965 Ovis aries ENSOARG00000009965 I 0.970
Ogr03312 Ophisaurus gracilis Ogr03312 I 0.930
Cmyd_10001928 Chelonia mydas Cmyd_10001928 I 0.921
ENSPSIG00000004437 Pelodiscus sinensis ENSPSIG00000004437 I 0.920
Pvit_09404 Pogona vitticeps Pvit_09404 I 0.911
Pvit_09406 Pogona vitticeps Pvit_09406 I 0.911
ENSACAG00000001535 Anolis carolinensis ENSACAG00000001535 I 0.894
Alligator_sinensis_CCG006068.1 Alligator sinensis Alligator_sinensis_CCG006068.1 I 0.881
Q9DFH3_CHICK Gallus gallus Q9DFH3_CHICK I 0.874
ENSGALG00000028624 Gallus gallus ENSGALG00000028624 D 0.874
nr1i2.L Xenopus laevis XB-GENE-17336519 I 0.873
nr1i2.S Xenopus laevis XB-GENE-865343 I 0.865
NR1I3 Tursiops truncatus ENSTTRG00000009227 I 0.848
Gfo_R005027 Geospiza fortis Gfo_R005027 I 0.846
Aan_R009572 Calypte anna Aan_R009572 I 0.845
VDR Taeniopygia guttata ENSTGUG00000017093 I 0.845
ENSGALG00000026166 Gallus gallus ENSGALG00000026166 I 0.845
VDR Meleagris gallopavo ENSMGAG00000004846 I 0.845
ENSPANG00000011327 Papio anubis ENSPANG00000011327 I 0.842
VDR Tupaia belangeri ENSTBEG00000005717 I 0.842
VDR Tursiops truncatus ENSTTRG00000012578 I 0.842
ENSMMUP00000008847 Macaca fascicularis ENSMMUP00000008847 I 0.842
ENSP00000229022-D1 Bos grunniens ENSP00000229022-D1 I 0.842
Myotis_brandtii_VDR_10022134 Myotis brandtii Myotis_brandtii_VDR_10022134 I 0.842
VDR Oryctolagus cuniculus ENSOCUG00000027507 I 0.842
ENSSTOG00000026741 Ictidomys tridecemlineatus ENSSTOG00000026741 I 0.842
VDR Pteropus vampyrus ENSPVAG00000011085 I 0.842
Vdr Rattus norvegicus ENSRNOG00000054420 I 0.842
VDR Sus scrofa ENSSSCG00000020864 I 0.842
ENSPPYG00000004448 Pongo abelii ENSPPYG00000004448 I 0.842
VDR Otolemur garnettii ENSOGAG00000005480 I 0.842
ENSCPOG00000006025 Cavia porcellus ENSCPOG00000006025 I 0.842
ENSCSAG00000006576 Chlorocebus sabaeus ENSCSAG00000006576 I 0.842
ENSMEUG00000014791 Macropus eugenii ENSMEUG00000014791 I 0.842
VDR Callithrix jacchus ENSCJAG00000015018 I 0.842
ENSCHOG00000008514 Choloepus hoffmanni ENSCHOG00000008514 I 0.842
VDR Homo sapiens ENSG00000111424 D 0.842
VDR Loxodonta africana ENSLAFG00000006418 I 0.842
VDR Dasypus novemcinctus ENSDNOG00000039161 I 0.842
VDR Erinaceus europaeus ENSEEUG00000011116 I 0.842
VDR Felis catus ENSFCAG00000024594 I 0.842
ENSOARG00000019372 Ovis aries ENSOARG00000019372 I 0.842
VDR Gorilla gorilla ENSGGOG00000016473 I 0.842
VDR Equus caballus ENSECAG00000015822 I 0.842
VDR Myotis lucifugus ENSMLUG00000000912 I 0.842
VDR Microcebus murinus ENSMICG00000009017 I 0.842
ENSMODG00000028774 Monodelphis domestica ENSMODG00000028774 I 0.842
ENSMPUG00000000419 Mustela putorius furo ENSMPUG00000000419 I 0.842
VDR Bos taurus ENSBTAG00000016414 I 0.842
Vdr Mus musculus ENSMUSG00000022479 D 0.842
VDR Macaca mulatta ENSMMUG00000006727 I 0.842
ENSAMEG00000013706 Ailuropoda melanoleuca ENSAMEG00000013706 I 0.842
ENSNLEG00000017900 Nomascus leucogenys ENSNLEG00000017900 I 0.842
VDR Canis familiaris ENSCAFG00000009103 I 0.842
NR1I2 Otolemur garnettii ENSOGAG00000006017 I 0.838
NR1I2 Canis familiaris ENSCAFG00000011094 I 0.836
Afo_R013462 Aptenodytes forsteri Afo_R013462 I 0.833
ENSPMAG00000003695 Petromyzon marinus ENSPMAG00000003695 I 0.829
ENSSHAG00000004437 Sarcophilus harrisii ENSSHAG00000004437 I 0.820
NR1I2 Sus scrofa ENSSSCG00000011890 I 0.818
NR1I2 Bos taurus ENSBTAG00000019557 I 0.818
ENSP00000336528-D1 Bos grunniens ENSP00000336528-D1 I 0.818
ENSPMAG00000000180 Petromyzon marinus ENSPMAG00000000180 D 0.810
ENSXMAG00000004608 Xiphophorus maculatus ENSXMAG00000004608 I 0.808
ENSXMAG00000018707 Xiphophorus maculatus ENSXMAG00000018707 I 0.808
ENSAMXG00000019854 Astyanax mexicanus ENSAMXG00000019854 I 0.808
vdrb Danio rerio ENSDARG00000070721 I 0.808
ENSAMXG00000012991 Astyanax mexicanus ENSAMXG00000012991 I 0.808
vdra Gasterosteus aculeatus ENSGACG00000004763 I 0.808
ENSGMOG00000012720 Gadus morhua ENSGMOG00000012720 I 0.808
ENSGMOG00000019451 Gadus morhua ENSGMOG00000019451 I 0.808
ENSPFOG00000014233 Poecilia formosa ENSPFOG00000014233 I 0.808
vdralpha Oryzias latipes ENSORLG00000001063 I 0.808
ENSPFOG00000001655 Poecilia formosa ENSPFOG00000001655 I 0.808
vdr Oryzias latipes ENSORLG00000016402 I 0.808
vdra Takifugu rubripes ENSTRUG00000011907 I 0.808
vdrb Takifugu rubripes ENSTRUG00000011576 I 0.808
vdrb Tetraodon nigroviridis ENSTNIG00000007031 I 0.808
vdrb Gasterosteus aculeatus ENSGACG00000007975 I 0.808
ENSONIG00000009200 Oreochromis niloticus ENSONIG00000009200 I 0.808
ENSONIG00000019378 Oreochromis niloticus ENSONIG00000019378 I 0.802
ENSLOCG00000005194 Lepisosteus oculatus ENSLOCG00000005194 I 0.802
ENSLACG00000019104 Latimeria chalumnae ENSLACG00000019104 I 0.799
HelroG108893 Helobdella robusta HelroG108893 I 0.798
VDR Anolis carolinensis ENSACAG00000013485 I 0.798
Pvit_07440 Pogona vitticeps Pvit_07440 I 0.798
ENSMEUG00000000113 Macropus eugenii ENSMEUG00000000113 I 0.797
Cmyd_10006875 Chelonia mydas Cmyd_10006875 I 0.784
ENSPSIG00000018108 Pelodiscus sinensis ENSPSIG00000018108 I 0.784
NEMVEDRAFT_v1g165424 Nematostella vectensis NEMVEDRAFT_v1g165424 I 0.780
ENSTSYG00000003990 Tarsius syrichta ENSTSYG00000003990 I 0.768
ENSLACG00000010334 Latimeria chalumnae ENSLACG00000010334 I 0.768
NR5A1 Meleagris gallopavo ENSMGAG00000008342 I 0.765
NR6A1 Pan troglodytes ENSPTRG00000021357 I 0.764
vdr.S Xenopus laevis XB-GENE-864847 I 0.764
vdr Xenopus tropicalis XB-GENE-486505 I 0.764
NR1I2 Myotis lucifugus ENSMLUG00000002877 I 0.749
Myotis_brandtii_NR1I2_10031787 Myotis brandtii Myotis_brandtii_NR1I2_10031787 I 0.749