CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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ENSSHAG00000005632
(
Sarcophilus harrisii
)
Nuclear receptor
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00105 (zf-C4)
IPR001628
ENSSHAG00000005632
T304761_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Esrra
M00183_2.00
Mus musculus
VAAGGTCAH
DTGACCTTB
PBM
Badis et al.(2009)
Esrra_2190
0.308
1.000
ESRRA
M03397_2.00
Homo sapiens
NYSAAGGTCAH
DTGACCTTSRN
SELEX
Jolma et al.(2013)
ESRRA_1
0.308
1.000
ESRRA
M03398_2.00
Homo sapiens
AAGGTCAWHCAAGGTCA
TGACCTTGDWTGACCTT
SELEX
Jolma et al.(2013)
ESRRA_2
0.308
1.000
ESRRA
M03399_2.00
Homo sapiens
SAAGGTCAHNYSAAGGTCA
TGACCTTSRNDTGACCTTS
SELEX
Jolma et al.(2013)
ESRRA_3
0.308
1.000
ESRRA
M03400_2.00
Homo sapiens
NYSAAGGTCAH
DTGACCTTSRN
SELEX
Jolma et al.(2013)
ESRRA_4
0.308
1.000
ESRRA
M03401_2.00
Homo sapiens
RAGGTCABNCAAGGTCA
TGACCTTGNVTGACCTY
SELEX
Jolma et al.(2013)
ESRRA_5
0.308
1.000
ESRRA
M03402_2.00
Homo sapiens
VAAGGTCAHNYSAAGGTCA
TGACCTTSRNDTGACCTTB
SELEX
Jolma et al.(2013)
ESRRA_6
0.308
1.000
Esrra
M03430_2.00
Mus musculus
DAGGTYAKTMAAGGTCA
TGACCTTKAMTRACCTH
SELEX
Jolma et al.(2013)
Esrra_1
0.308
1.000
Esrra
M03431_2.00
Mus musculus
KTCAAGGTCAT
ATGACCTTGAM
SELEX
Jolma et al.(2013)
Esrra_2
0.308
1.000
ESRRA
M05655_2.00
Homo sapiens
NNSAAGGTCAN
NTGACCTTSNN
SELEX
Yin et al.(2017)
ESRRA_eDBD_HT-SELEX
0.308
1.000
ESRRA
M05657_2.00
Homo sapiens
NNSAAGGTCAH
DTGACCTTSNN
SELEX
Yin et al.(2017)
ESRRA_FL_HT-SELEX
0.308
1.000
ESRRA
M07988_2.00
Homo sapiens
RGGKCASMNTGMCCY
RGGKCANKSTGMCCY
ChIP-seq
Gerstein et al.(2012)
ECC-1_ERALPHA_HudsonAlpha
0.308
1.000
ESRRA
M07989_2.00
Homo sapiens
NNRGGTCABNNTGHCCYNN
NNRGGDCANNVTGACCYNN
ChIP-seq
Gerstein et al.(2012)
T-47D_ERALPHA_HudsonAlpha
0.308
1.000
ESRRA
M09290_2.00
Homo sapiens
BYSAAGGTCANNNNN
NNNNNTGACCTTSRV
Misc
Kulakovskiy et al.(2013)
ERR1_HUMAN.H11MO.0.A
0.308
1.000
Esrra
M09319_2.00
Mus musculus
NNBYCAAGGTCA
TGACCTTGRVNN
Misc
Kulakovskiy et al.(2013)
ERR1_MOUSE.H11MO.0.A
0.308
1.000
ESRRA
M11168_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$ERR1_Q2_01
0.308
1.000
ESRRA
M11169_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$ERR1_Q2
0.308
1.000
ESRRA
M11170_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$ERR1_Q3
0.308
1.000
ESRRA
M11171_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$ESRRA_10
0.308
1.000
ESRRA
M05656_2.00
Homo sapiens
NNSAAGGTCRN
NYGACCTTSNN
SELEX
Yin et al.(2017)
ESRRA_eDBD_Methyl-HT-SELEX
0.308
1.000
ESRRA
M05658_2.00
Homo sapiens
NBSAAGGTCRH
DYGACCTTSVN
SELEX
Yin et al.(2017)
ESRRA_FL_Methyl-HT-SELEX
0.308
1.000
For this family, TFs with SR scores >
0.745
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSSHAP00000006472
Nuclear receptor
1
43
KRTIQGSIEYSCPASNECEITKRRRKACQACRFTKCLRVGMLK
Links
Other
Nuclear receptor
family TFs
Other
Sarcophilus harrisii
TFs
36 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy