NR1H2 (Sus scrofa)
Nuclear receptor

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00105 (zf-C4) IPR001628 ENSSSCG00000003211 T304806_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Nr1h2
M09620_2.00
Mus musculus
RGGTYACTNNAGGTCA

TGACCTNNAGTRACCY
Misc
Heinz et al.(2010)
RAW-LXRb.biotin_GSE21512
0.969 0.914
Nr1h3
M09301_2.00
Mus musculus
VDGDNCARAGKBCAN

NTGVMCTYTGNHCHB
Misc
Kulakovskiy et al.(2013)
NR1H3_MOUSE.H11MO.0.A
0.952 0.786
NR1H3
M09264_2.00
Homo sapiens
NHRRGGBHABHNNRGGNCA

TGNCCYNNDVTDVCCYYDN
Misc
Kulakovskiy et al.(2013)
NR1H3_HUMAN.H11MO.0.B
0.951 0.786
NR1H4
M00368_2.00
Homo sapiens
NVRGGTCANN

NNTGACCYBN
PBM
Barrera et al.(2016)
NR1H4_REF
0.911 0.686
NR1H4
M05876_2.00
Homo sapiens
DRGKTCAHHKD

HMDDTGAMCYH
SMiLE-seq
Isakova et al.(2017)
NR1H4
0.911 0.686
NR1H4
M08152_2.00
Homo sapiens
NNGGTCATTNN

NNAATGACCNN
ChIP-seq
Mathelier et al.(2014)
MA1110.1
0.911 0.686
NR1H4
M09263_2.00
Homo sapiens
CCBVNVGGYCRBTGMCCYB

VRGGKCAVYGRCCBNBVGG
Misc
Kulakovskiy et al.(2013)
NR1H4_HUMAN.H11MO.0.B
0.911 0.686
Nr1h4
M09332_2.00
Mus musculus
CCBVNVGGYCRBTGMCCYB

VRGGKCAVYGRCCBNBVGG
Misc
Kulakovskiy et al.(2013)
NR1H4_MOUSE.H11MO.0.A
0.911 0.686
Nr1h4
M09618_2.00
Mus musculus
NRGGBCANTGVCCY

RGGBCANTGVCCYN
Misc
Heinz et al.(2010)
Liver-FXR_Chong_et_al.
0.911 0.686
NR1H4
M11086_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$FXR_Q2
0.911 0.686
NR1H4
M11087_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$FXR_Q3
0.911 0.686
NR1H4
M11088_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$FXR_Q5
0.911 0.686
NR1H4
M11089_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$FXRRXR_Q5
0.911 0.686
NR1H4
M00367_2.00
Homo sapiens
NNNTWTTATDHNN

NNDHATAAWANNN
PBM
Barrera et al.(2016)
NR1H4_C144R
0.911 0.671
nr1h5.S
M11194_2.00
Xenopus laevis Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$FXRIR1_Q6
0.901 0.657
EcR
M06414_2.00
Drosophila melanogaster
RAGGTCAW

WTGACCTY
B1H
Zhu et al.(2011)
EcR_SANGER_5_FBgn0000546
0.897 0.657
O77476_BRUPA
M02422_2.00
Brugia pahangi
NRGGTCAN

NTGACCYN
PBM
Weirauch et al.(2014)
pTH6019
0.848 0.586
svp
M06423_2.00
Drosophila melanogaster
ARGGTCA

TGACCYK
B1H
Zhu et al.(2011)
svp_SANGER_5_FBgn0003651
0.802 0.529
Q6VU64_APLCA
M02423_2.00
Aplysia californica
NRGGTCAN

NTGACCYN
PBM
Weirauch et al.(2014)
pTH6055
0.800 0.557
Q969A9_BOMMO
M02410_2.00
Bombyx mori
VRGGTCDN

NHGACCYB
PBM
Weirauch et al.(2014)
pTH5516
0.798 0.543
Hr78
M06430_2.00
Drosophila melanogaster
HVAGGTCA

TGACCTBD
B1H
Zhu et al.(2011)
Hr78_SANGER_5_FBgn0015239
0.782 0.557
Nr2c1
M00812_2.00
Mus musculus
NRRGGTCANN

NNTGACCYYN
PBM
Weirauch et al.(2013)
pTH1284
0.769 0.500
Nr2c1
M02399_2.00
Mus musculus
RRGGTCAH

DTGACCYY
PBM
Weirauch et al.(2014)
pTH3466
0.769 0.500
NR2C1
M05597_2.00
Homo sapiens
NRGKKCRYGAMMYN

NRKKTCRYGMMCYN
SELEX
Yin et al.(2017)
NR2C1_eDBD_HT-SELEX_1
0.769 0.500
NR2C1
M05598_2.00
Homo sapiens
NRRGGTCAN

NTGACCYYN
SELEX
Yin et al.(2017)
NR2C1_eDBD_HT-SELEX_2
0.769 0.500
NR2C1
M09273_2.00
Homo sapiens
RBYVRVAGGTCAB

VTGACCTBYBRVY
Misc
Kulakovskiy et al.(2013)
NR2C1_HUMAN.H11MO.0.C
0.769 0.500
Nr2c1
M09304_2.00
Mus musculus
RBYVRVAGGTCAB

VTGACCTBYBRVY
Misc
Kulakovskiy et al.(2013)
NR2C1_MOUSE.H11MO.0.C
0.769 0.500
NR2C1
M05599_2.00
Homo sapiens
NRRGGTCAN

NTGACCYYN
SELEX
Yin et al.(2017)
NR2C1_eDBD_Methyl-HT-SELEX_1
0.769 0.500
NR2C1
M05600_2.00
Homo sapiens
RRGGTCRYGACCYY

RRGGTCRYGACCYY
SELEX
Yin et al.(2017)
NR2C1_eDBD_Methyl-HT-SELEX_2
0.769 0.500
Esr1
M00813_2.00
Mus musculus
NRKGTCANNN

NNNTGACMYN
PBM
Weirauch et al.(2013)
pTH3510
0.768 0.514
ESR1
M03356_2.00
Homo sapiens
NRGGTCAMVRTGACCTK

MAGGTCAYBKTGACCYN
SELEX
Jolma et al.(2013)
ESR1_1
0.768 0.514
ESR1
M05569_2.00
Homo sapiens
NAGGTCAYSRTGACCTN

NAGGTCAYSRTGACCTN
SELEX
Yin et al.(2017)
ESR1_eDBD_HT-SELEX
0.768 0.514
ESR1
M05571_2.00
Homo sapiens
NRGGTCANSNTGACCYN

NRGGTCANSNTGACCYN
SELEX
Yin et al.(2017)
ESR1_FL_HT-SELEX
0.768 0.514
ESR1
M07985_2.00
Homo sapiens
DNBYMAAGGTCANN

NNTGACCTTKRVNH
ChIP-seq
Gerstein et al.(2012)
HepG2_ERRA_Stanford
0.768 0.514
ESR1
M08217_2.00
Homo sapiens
NHNRGGTCANNNTGNCCY

RGGNCANNNTGACCYNDN
ChIP-seq
Contrino et al.(2012)
Mv66
0.768 0.514
ESR1
M08218_2.00
Homo sapiens
CCAAGGTCAS

STGACCTTGG
ChIP-seq
Contrino et al.(2012)
Mv67
0.768 0.514
ESR1
M09267_2.00
Homo sapiens
RGGKCABMNTGMCCY

RGGKCANKVTGMCCY
Misc
Kulakovskiy et al.(2013)
ESR1_HUMAN.H11MO.0.A
0.768 0.514
Esr1
M09309_2.00
Mus musculus
RGGDCABKSTGWCCY

RGGWCASMVTGHCCY
Misc
Kulakovskiy et al.(2013)
ESR1_MOUSE.H11MO.0.A
0.768 0.514
ESR1
M09604_2.00
Homo sapiens
NRGGTCANNNTGACC

GGTCANNNTGACCYN
Misc
Heinz et al.(2010)
MCF7-ERa_Unpublished
0.768 0.514
ESR1
M11098_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$ERALPHA_01
0.768 0.514
ESR1
M11099_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$ERALPHA_Q4
0.768 0.514
ESR1
M11100_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$ERALPHA_Q6_01
0.768 0.514
ESR1
M11101_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$ERALPHA_Q6_02
0.768 0.514
ESR1
M11102_2.00
Homo sapiens
NHRGGTCAVNNHNNHYBNN

NNVRDNNDNNBTGACCYDN
Transfac
Matys et al.(2006)
V$ER_Q6
0.768 0.514
ESR1
M11103_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$ESR1_04
0.768 0.514
ESR1
M11104_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$ESR1_05
0.768 0.514
ESR1
M05570_2.00
Homo sapiens
NAGGTCAYSRYGACCTH

DAGGTCRYSRTGACCTN
SELEX
Yin et al.(2017)
ESR1_eDBD_Methyl-HT-SELEX
0.768 0.514
ESR1
M05572_2.00
Homo sapiens
NRGGTCANSBYGACCYN

NRGGTCRVSNTGACCYN
SELEX
Yin et al.(2017)
ESR1_FL_Methyl-HT-SELEX
0.768 0.514
Smp_105090
M02412_2.00
Schistosoma mansoni
RGGTCANN

NNTGACCY
PBM
Weirauch et al.(2014)
pTH6174
0.766 0.543
Esr2
M01297_2.00
Mus musculus
NNRGGTCAH

DTGACCYNN
PBM
Lambert et al.(2019)
pTH3511
0.756 0.514
ESR2
M08154_2.00
Homo sapiens
RGGTCASNNWGNCCY

RGGNCWNNSTGACCY
ChIP-seq
Mathelier et al.(2014)
MA0258.2
0.756 0.514
ESR2
M09279_2.00
Homo sapiens
RGGKCRVRSYGMCCY

RGGKCRSYBYGMCCY
Misc
Kulakovskiy et al.(2013)
ESR2_HUMAN.H11MO.0.A
0.756 0.514
Esr2
M09311_2.00
Mus musculus
RGGKCRVRSYGMCCY

RGGKCRSYBYGMCCY
Misc
Kulakovskiy et al.(2013)
ESR2_MOUSE.H11MO.0.A
0.756 0.514
ESR2
M11146_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$ERBETA_Q5_01
0.756 0.514
ESR2
M11147_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$ERBETA_Q5
0.756 0.514
NR2F6
M02396_2.00
Homo sapiens
NNRGGTCR

YGACCYNN
PBM
Weirauch et al.(2014)
pTH6747
0.750 0.529
NR2F6
M03386_2.00
Homo sapiens
RRGGTCAAAAGGTCA

TGACCTTTTGACCYY
SELEX
Jolma et al.(2013)
NR2F6_1
0.750 0.529
NR2F6
M03387_2.00
Homo sapiens
RRGGTCAAAGGTCA

TGACCTTTGACCYY
SELEX
Jolma et al.(2013)
NR2F6_2
0.750 0.529
NR2F6
M03388_2.00
Homo sapiens
NRGGTCAAAGGTCA

TGACCTTTGACCYN
SELEX
Jolma et al.(2013)
NR2F6_3
0.750 0.529
NR2F6
M05641_2.00
Homo sapiens
RRGGTCAAAGGTCAN

NTGACCTTTGACCYY
SELEX
Yin et al.(2017)
NR2F6_eDBD_HT-SELEX_1
0.750 0.529
NR2F6
M05642_2.00
Homo sapiens
RAGGTCANTGACCTY

RAGGTCANTGACCTY
SELEX
Yin et al.(2017)
NR2F6_eDBD_HT-SELEX_2
0.750 0.529
NR2F6
M05645_2.00
Homo sapiens
NRGGTCARAGGTCRN

NYGACCTYTGACCYN
SELEX
Yin et al.(2017)
NR2F6_FL_HT-SELEX_1
0.750 0.529
NR2F6
M05646_2.00
Homo sapiens
NRGGTCANYGACCYY

RRGGTCRNTGACCYN
SELEX
Yin et al.(2017)
NR2F6_FL_HT-SELEX_2
0.750 0.529
NR2F6
M11153_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$EAR2_Q2
0.750 0.529
NR2F6
M11154_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$EAR2_Q4
0.750 0.529
NR2F6
M05643_2.00
Homo sapiens
RRGGTCAAAGGTCRN

NYGACCTTTGACCYY
SELEX
Yin et al.(2017)
NR2F6_eDBD_Methyl-HT-SELEX_1
0.750 0.529
NR2F6
M05644_2.00
Homo sapiens
RRGGTCRNYGACCYY

RRGGTCRNYGACCYY
SELEX
Yin et al.(2017)
NR2F6_eDBD_Methyl-HT-SELEX_2
0.750 0.529
NR2F6
M05647_2.00
Homo sapiens
NRGGTYADRGGKBRN

NYVMCCYHTRACCYN
SELEX
Yin et al.(2017)
NR2F6_FL_Methyl-HT-SELEX_1
0.750 0.529
NR2F6
M05648_2.00
Homo sapiens
NRGGTCANYGACCYN

NRGGTCRNTGACCYN
SELEX
Yin et al.(2017)
NR2F6_FL_Methyl-HT-SELEX_2
0.750 0.529
RORC
M02405_2.00
Tetraodon nigroviridis
NGAGGTCANN

NNTGACCTCN
PBM
Weirauch et al.(2014)
pTH6612
0.748 0.500
Nr2f2
M00184_2.00
Mus musculus
RRGGTCAN

NTGACCYY
PBM
Badis et al.(2009)
Nr2f2_2192
0.748 0.514
NR2F2
M08157_2.00
Homo sapiens
NNAAGGTCANN

NNTGACCTTNN
ChIP-seq
Mathelier et al.(2014)
MA1111.1
0.748 0.514
NR2F2
M08223_2.00
Homo sapiens
AAAGGTCA

TGACCTTT
ChIP-seq
Contrino et al.(2012)
Mv102
0.748 0.514
NR2F2
M08224_2.00
Homo sapiens
GGKCARAGGB

VCCTYTGMCC
ChIP-seq
Contrino et al.(2012)
Mv104
0.748 0.514
NR2F2
M09293_2.00
Homo sapiens
NARRGGTCADRDN

NHYHTGACCYYTN
Misc
Kulakovskiy et al.(2013)
COT2_HUMAN.H11MO.0.A
0.748 0.514
Nr2f2
M09325_2.00
Mus musculus
NNHRAGGTCANVD

HBNTGACCTYDNN
Misc
Kulakovskiy et al.(2013)
COT2_MOUSE.H11MO.0.A
0.748 0.514
NR2F2
M11180_2.00
Homo sapiens
WRRKKTCAARGGYTCA

TGARCCYTTGAMMYYW
Transfac
Matys et al.(2006)
V$ARP1_01
0.748 0.514
NR2F2
M11181_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$COUPTF2_Q6
0.748 0.514
For this family, TFs with SR scores > 0.745 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSSSCP00000003483 Nuclear receptor 84 155

Links

Other Nuclear receptor family TFs
Other Sus scrofa TFs

890 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AAEL008774 Aedes aegypti AAEL008774 N 0.000
AALB005025 Anopheles albimanus AALB005025 N 0.000
Aan_R000240 Calypte anna Aan_R000240 N 0.000
AARA009353 Anopheles arabiensis AARA009353 N 0.000
AATE007240 Anopheles atroparvus AATE007240 N 0.000
AATE012616 Anopheles atroparvus AATE012616 N 0.000
ACEP15814 Atta cephalotes ACEP15814 N 0.000
ACEP25043 Atta cephalotes ACEP25043 N 0.000
ACHR000819 Anopheles christyi ACHR000819 N 0.000
ACOM031365 Anopheles coluzzii ACOM031365 N 0.000
ACUA013442 Anopheles culicifacies ACUA013442 N 0.000
ACUA027613 Anopheles culicifacies ACUA027613 N 0.000
ADIR001615 Anopheles dirus ADIR001615 N 0.000
ADIR007854 Anopheles dirus ADIR007854 N 0.000
AEPI009272 Anopheles epiroticus AEPI009272 N 0.000
AFAF002400 Anopheles farauti AFAF002400 N 0.000
AFAF005225 Anopheles farauti AFAF005225 N 0.000
Afo_R000937 Aptenodytes forsteri Afo_R000937 N 0.000
AFUN003918 Anopheles funestus AFUN003918 N 0.000
AFUN004672 Anopheles funestus AFUN004672 N 0.000
AGAP004994 Anopheles gambiae AGAP004994 N 0.000
Alligator_sinensis_CCG008729.1 Alligator sinensis Alligator_sinensis_CCG008729.1 N 0.000
Alligator_sinensis_CCG008730.1 Alligator sinensis Alligator_sinensis_CCG008730.1 N 0.000
Alligator_sinensis_CCG019089.1 Alligator sinensis Alligator_sinensis_CCG019089.1 N 0.000
AMAM022739 Anopheles maculatus AMAM022739 N 0.000
AMAM022787 Anopheles maculatus AMAM022787 N 0.000
AMEC011358 Anopheles melas AMEC011358 N 0.000
AMEC020736 Anopheles melas AMEC020736 N 0.000
AMEM004507 Anopheles merus AMEM004507 N 0.000
AMEM016792 Anopheles merus AMEM016792 N 0.000
AMIN011106 Anopheles minimus AMIN011106 N 0.000
AMIN011476 Anopheles minimus AMIN011476 N 0.000
AQUA001970 Anopheles quadriannulatus AQUA001970 N 0.000
ASIS018279 Anopheles sinensis ASIS018279 N 0.000
ASTEI02568 Anopheles stephensi ASTEI02568 N 0.000
ASTEI10792 Anopheles stephensi ASTEI10792 N 0.000
Brh_R006141 Buceros rhinoceros Brh_R006141 N 0.000
Brh_R008651 Buceros rhinoceros Brh_R008651 N 0.000
Brh_R010138 Buceros rhinoceros Brh_R010138 N 0.000
Cflo_00612--XP_001121679.1_APIME Camponotus floridanus Cflo_00612--XP_001121679.1_APIME N 0.000
Cflo_01441--XP_624772.1_APIME Camponotus floridanus Cflo_01441--XP_624772.1_APIME N 0.000
Cflo_05095--XP_001121583.1_APIME Camponotus floridanus Cflo_05095--XP_001121583.1_APIME N 0.000
CLEC005259 Cimex lectularius CLEC005259 N 0.000
Cmyd_10014845 Chelonia mydas Cmyd_10014845 N 0.000
CPIJ003991 Culex quinquefasciatus CPIJ003991 N 0.000
CPIJ012897 Culex quinquefasciatus CPIJ012897 N 0.000
CpipJ_CPIJ003991 Culex pipiens CpipJ_CPIJ003991 N 0.000
CpipJ_CPIJ012897 Culex pipiens CpipJ_CPIJ012897 N 0.000
DAPPUDRAFT_55379 Daphnia pulex DAPPUDRAFT_55379 N 0.000
ENSAPLG00000001763 Anas platyrhynchos ENSAPLG00000001763 N 0.000
KLF4 Canis familiaris ENSCAFG00000002797 N 0.000
KLF4 Choloepus hoffmanni ENSCHOG00000000846 N 0.000
KLF8 Choloepus hoffmanni ENSCHOG00000001301 N 0.000
KLF1 Erinaceus europaeus ENSEEUG00000008498 N 0.000
KLF8 Erinaceus europaeus ENSEEUG00000014292 N 0.000
ENSFALG00000011272 Ficedula albicollis ENSFALG00000011272 N 0.000
KLF7 Homo sapiens ENSG00000118263 D 0.000
ENSMEUG00000004560 Macropus eugenii ENSMEUG00000004560 N 0.000
ENSMEUG00000010788 Macropus eugenii ENSMEUG00000010788 N 0.000
ENSMEUG00000011825 Macropus eugenii ENSMEUG00000011825 N 0.000
KLF8 Microcebus murinus ENSMICG00000001146 N 0.000
KLF4 Microcebus murinus ENSMICG00000004603 N 0.000
KLF7 Tupaia belangeri ENSTBEG00000007537 N 0.000
ENSTSYG00000005368 Tarsius syrichta ENSTSYG00000005368 N 0.000
GB45842 Apis mellifera GB45842 N 0.000
ISCW018441 Ixodes scapularis ISCW018441 N 0.000
LLOJ002499 Lutzomyia longipalpis LLOJ002499 N 0.000
LLOJ003369 Lutzomyia longipalpis LLOJ003369 N 0.000
Myotis_brandtii_Klf2_10008330 Myotis brandtii Myotis_brandtii_Klf2_10008330 N 0.000
Myotis_brandtii_Klf3_10026481 Myotis brandtii Myotis_brandtii_Klf3_10026481 N 0.000
nRc.2.0.1.g39355 Romanomermis culicivorax nRc.2.0.1.g39355 N 0.000
Ocbimv22007604m.g Octopus bimaculoides Ocbimv22007604m.g N 0.000
Ogr15320 Ophisaurus gracilis Ogr15320 N 0.000
Ogr15793 Ophisaurus gracilis Ogr15793 N 0.000
PHUM483510 Pediculus humanus PHUM483510 N 0.000
PHUM484450 Pediculus humanus PHUM484450 N 0.000
PPAI000636 Phlebotomus papatasi PPAI000636 N 0.000
RPRC002307 Rhodnius prolixus RPRC002307 N 0.000
scaffold1198-EXSNAP2012.7 Pristionchus exspectatus scaffold1198-EXSNAP2012.7 N 0.000
SINV10616 Solenopsis invicta SINV10616 N 0.000
SINV21799 Solenopsis invicta SINV21799 N 0.000
SINV23346 Solenopsis invicta SINV23346 N 0.000
Tal_R009016 Tyto alba Tal_R009016 N 0.000
Tal_R010271 Tyto alba Tal_R010271 N 0.000
TC003612 Tribolium castaneum TC003612 N 0.000
YQE_09845 Dendroctonus ponderosae YQE_09845 N 0.000
YQE_12304 Dendroctonus ponderosae YQE_12304 N 0.000