NR1I2 (Sus scrofa)
Nuclear receptor

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00105 (zf-C4) IPR001628 ENSSSCG00000011890 T304820_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
NR1I2
M03925_2.00
Homo sapiens
RGKKCRNNVRGKKCR

YGMMCYBNNYGMMCY
SELEX
Nitta et al.(2015)
NR1I2_1
0.983 0.943
NR1I2
M05625_2.00
Homo sapiens
VRGTTCRNNSRGKTCRH

DYGAMCYSNNYGAACYB
SELEX
Yin et al.(2017)
NR1I2_eDBD_HT-SELEX
0.983 0.943
NR1I2
M09283_2.00
Homo sapiens
DDRRBTYMDNNRAGKTCAN

NTGAMCTYNNHKRAVYYHH
Misc
Kulakovskiy et al.(2013)
NR1I2_HUMAN.H11MO.0.C
0.983 0.943
NR1I2
M05626_2.00
Homo sapiens
VRGKKCRNNVRGKKCRN

NYGMMCYBNNYGMMCYB
SELEX
Yin et al.(2017)
NR1I2_eDBD_Methyl-HT-SELEX
0.983 0.943
Nr1i2
M09316_2.00
Mus musculus
DDRRBTYMDNNRAGKTCAN

NTGAMCTYNNHKRAVYYHH
Misc
Kulakovskiy et al.(2013)
NR1I2_MOUSE.H11MO.0.C
0.954 0.914
ENSPMAG00000000180
M02403_2.00
Petromyzon marinus
RGKWCRN

NYGWMCY
PBM
Weirauch et al.(2014)
pTH5509
0.945 0.643
VDR
M03363_2.00
Homo sapiens
GRGTTCAYHGRGTTCA

TGAACYCDRTGAACYC
SELEX
Jolma et al.(2013)
VDR_1
0.924 0.629
Vdr
M03429_2.00
Mus musculus
RRGTTCAYHGRGTTCA

TGAACYCDRTGAACYY
SELEX
Jolma et al.(2013)
Vdr_1
0.924 0.629
VDR
M05877_2.00
Homo sapiens
HRRGTTCA

TGAACYYD
SMiLE-seq
Isakova et al.(2017)
VDR
0.924 0.629
VDR
M09269_2.00
Homo sapiens
NRGGKCANNGRGKKCR

YGMMCYCNNTGMCCYN
Misc
Kulakovskiy et al.(2013)
VDR_HUMAN.H11MO.0.A
0.924 0.629
Vdr
M09315_2.00
Mus musculus
NRGGKCANNGRGKKCR

YGMMCYCNNTGMCCYN
Misc
Kulakovskiy et al.(2013)
VDR_MOUSE.H11MO.0.A
0.924 0.629
VDR
M09606_2.00
Homo sapiens
NRRGGTCANNRRGKKCANNN

NNNTGMMCYYNNTGACCYYN
Misc
Heinz et al.(2010)
GM10855-VDR+vitD_GSE22484
0.924 0.629
VDR
M11116_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$VDR_Q3
0.924 0.629
VDR
M11117_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$VDR_Q6_01
0.924 0.629
VDR
M11118_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$VDR_Q6
0.924 0.629
ENSGALG00000028624
M02398_2.00
Gallus gallus
GRGKTCAH

DTGAMCYC
PBM
Weirauch et al.(2014)
pTH6492
0.883 0.643
NR1I3
M03924_2.00
Homo sapiens
RGKDYRNNNNRGKKYR

YRMMCYNNNNYRHMCY
SELEX
Nitta et al.(2015)
NR1I3_1
0.840 0.600
NR1I3
M05619_2.00
Homo sapiens
WDAGTTCAH

DTGAACTHW
SELEX
Yin et al.(2017)
NR1I3_FL_HT-SELEX
0.840 0.600
NR1I3
M09281_2.00
Homo sapiens
DRGGTCANNNRAGTTYAN

NTRAACTYNNNTGACCYH
Misc
Kulakovskiy et al.(2013)
NR1I3_HUMAN.H11MO.0.C
0.840 0.600
NR1I3
M05620_2.00
Homo sapiens
WDAGTTCRN

NYGAACTHW
SELEX
Yin et al.(2017)
NR1I3_FL_Methyl-HT-SELEX
0.840 0.600
Nr1i3
M09302_2.00
Mus musculus
DRGGTCANNNRAGTTYAN

NTRAACTYNNNTGACCYH
Misc
Kulakovskiy et al.(2013)
NR1I3_MOUSE.H11MO.0.C
0.818 0.586
For this family, TFs with SR scores > 0.745 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSSSCP00000012667 Nuclear receptor 25 95
ENSSSCP00000012669 Nuclear receptor 25 95

Links

Other Nuclear receptor family TFs
Other Sus scrofa TFs

188 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ENSP00000336528-D1 Bos grunniens ENSP00000336528-D1 I 0.990
NR1I2 Bos taurus ENSBTAG00000019557 I 0.989
NR1I2 Myotis lucifugus ENSMLUG00000002877 I 0.984
Myotis_brandtii_NR1I2_10031787 Myotis brandtii Myotis_brandtii_NR1I2_10031787 I 0.984
NR1I2 Callithrix jacchus ENSCJAG00000008854 I 0.983
ENSTSYG00000010757 Tarsius syrichta ENSTSYG00000010757 I 0.983
NR1I2 Equus caballus ENSECAG00000008728 I 0.983
NR1I2 Homo sapiens ENSG00000144852 D 0.983
NR1I2 Macaca mulatta ENSMMUG00000001976 I 0.983
NR1I2 Gorilla gorilla ENSGGOG00000007361 I 0.983
ENSNLEG00000005060 Nomascus leucogenys ENSNLEG00000005060 I 0.983
NR1I2 Pan troglodytes ENSPTRG00000015263 I 0.983
NR1I2 Echinops telfairi ENSETEG00000018117 I 0.983
ENSP00000336528 Macaca fascicularis ENSP00000336528 I 0.983
ENSAMEG00000007006 Ailuropoda melanoleuca ENSAMEG00000007006 I 0.980
NR1I2 Felis catus ENSFCAG00000006092 I 0.980
NR1I2 Otolemur garnettii ENSOGAG00000006017 I 0.972
NR1I2 Pteropus vampyrus ENSPVAG00000000884 I 0.972
nr1i2 Danio rerio ENSDARG00000029766 I 0.967
NR1I2 Ochotona princeps ENSOPRG00000010448 I 0.964
NR1I2 Procavia capensis ENSPCAG00000009674 I 0.963
ENSLACG00000010334 Latimeria chalumnae ENSLACG00000010334 I 0.962
NR1I2 Loxodonta africana ENSLAFG00000007829 I 0.957
ENSAMXG00000008863 Astyanax mexicanus ENSAMXG00000008863 I 0.956
Nr1i2 Dipodomys ordii ENSDORG00000003966 I 0.954
Nr1i2 Mus musculus ENSMUSG00000022809 D 0.954
NR1I2 Cavia porcellus ENSCPOG00000020161 I 0.954
ENSSTOG00000014988 Ictidomys tridecemlineatus ENSSTOG00000014988 I 0.954
Nr1i2 Rattus norvegicus ENSRNOG00000002906 I 0.954
ENSSHAG00000004437 Sarcophilus harrisii ENSSHAG00000004437 I 0.953
nr1i2.S Xenopus laevis XB-GENE-865343 I 0.952
nr1i2.L Xenopus laevis XB-GENE-17336519 I 0.952
ENSCSAVG00000001918 Ciona savignyi ENSCSAVG00000001918 I 0.952
ENSPSIG00000018108 Pelodiscus sinensis ENSPSIG00000018108 I 0.946
Cmyd_10006875 Chelonia mydas Cmyd_10006875 I 0.946
ENSXMAG00000018707 Xiphophorus maculatus ENSXMAG00000018707 I 0.945
vdra Gasterosteus aculeatus ENSGACG00000004763 I 0.945
vdrb Gasterosteus aculeatus ENSGACG00000007975 I 0.945
ENSGMOG00000012720 Gadus morhua ENSGMOG00000012720 I 0.945
ENSLOCG00000005194 Lepisosteus oculatus ENSLOCG00000005194 I 0.945
ENSGMOG00000019451 Gadus morhua ENSGMOG00000019451 I 0.945
VDR Anolis carolinensis ENSACAG00000013485 I 0.945
vdr-a Ciona intestinalis ENSCING00000020740 I 0.945
vdrb Takifugu rubripes ENSTRUG00000011576 I 0.945
ENSAMXG00000012991 Astyanax mexicanus ENSAMXG00000012991 I 0.945
ENSXMAG00000004608 Xiphophorus maculatus ENSXMAG00000004608 I 0.945
ENSAMXG00000019854 Astyanax mexicanus ENSAMXG00000019854 I 0.945
vdrb Danio rerio ENSDARG00000070721 I 0.945
vdra Takifugu rubripes ENSTRUG00000011907 I 0.945
ENSPFOG00000014233 Poecilia formosa ENSPFOG00000014233 I 0.945
Pvit_07440 Pogona vitticeps Pvit_07440 I 0.945
vdr Oryzias latipes ENSORLG00000016402 I 0.945
ENSPFOG00000001655 Poecilia formosa ENSPFOG00000001655 I 0.945
ENSONIG00000019378 Oreochromis niloticus ENSONIG00000019378 I 0.945
vdrb Tetraodon nigroviridis ENSTNIG00000007031 I 0.945
ENSPMAG00000000180 Petromyzon marinus ENSPMAG00000000180 D 0.945
vdralpha Oryzias latipes ENSORLG00000001063 I 0.945
ENSONIG00000009200 Oreochromis niloticus ENSONIG00000009200 I 0.945
ENSMEUG00000000113 Macropus eugenii ENSMEUG00000000113 I 0.943
ENSLACG00000019104 Latimeria chalumnae ENSLACG00000019104 I 0.943
NR1I2 Canis familiaris ENSCAFG00000011094 I 0.938
NR1I2 Oryctolagus cuniculus ENSOCUG00000006125 I 0.935
vdr.S Xenopus laevis XB-GENE-864847 I 0.933
vdr Xenopus tropicalis XB-GENE-486505 I 0.931
Afo_R013462 Aptenodytes forsteri Afo_R013462 I 0.928
Aan_R009572 Calypte anna Aan_R009572 I 0.926
ENSGALG00000026166 Gallus gallus ENSGALG00000026166 I 0.926
VDR Taeniopygia guttata ENSTGUG00000017093 I 0.926
VDR Meleagris gallopavo ENSMGAG00000004846 I 0.926
Gfo_R005027 Geospiza fortis Gfo_R005027 I 0.925
ENSCSAG00000006576 Chlorocebus sabaeus ENSCSAG00000006576 I 0.924
VDR Dasypus novemcinctus ENSDNOG00000039161 I 0.924
ENSP00000229022-D1 Bos grunniens ENSP00000229022-D1 I 0.924
VDR Tursiops truncatus ENSTTRG00000012578 I 0.924
ENSPANG00000011327 Papio anubis ENSPANG00000011327 I 0.924
Myotis_brandtii_VDR_10022134 Myotis brandtii Myotis_brandtii_VDR_10022134 I 0.924
VDR Loxodonta africana ENSLAFG00000006418 I 0.924
ENSCHOG00000008514 Choloepus hoffmanni ENSCHOG00000008514 I 0.924
Vdr Rattus norvegicus ENSRNOG00000054420 I 0.924
ENSAMEG00000013706 Ailuropoda melanoleuca ENSAMEG00000013706 I 0.924
VDR Sus scrofa ENSSSCG00000020864 I 0.924
ENSSTOG00000026741 Ictidomys tridecemlineatus ENSSTOG00000026741 I 0.924
VDR Bos taurus ENSBTAG00000016414 I 0.924
VDR Pteropus vampyrus ENSPVAG00000011085 I 0.924
VDR Callithrix jacchus ENSCJAG00000015018 I 0.924
ENSPPYG00000004448 Pongo abelii ENSPPYG00000004448 I 0.924
VDR Erinaceus europaeus ENSEEUG00000011116 I 0.924
VDR Canis familiaris ENSCAFG00000009103 I 0.924
ENSCPOG00000006025 Cavia porcellus ENSCPOG00000006025 I 0.924
VDR Equus caballus ENSECAG00000015822 I 0.924
VDR Gorilla gorilla ENSGGOG00000016473 I 0.924
VDR Myotis lucifugus ENSMLUG00000000912 I 0.924
ENSNLEG00000017900 Nomascus leucogenys ENSNLEG00000017900 I 0.924
ENSMMUP00000008847 Macaca fascicularis ENSMMUP00000008847 I 0.924
Vdr Mus musculus ENSMUSG00000022479 D 0.924
ENSMPUG00000000419 Mustela putorius furo ENSMPUG00000000419 I 0.924
VDR Macaca mulatta ENSMMUG00000006727 I 0.924
ENSMODG00000028774 Monodelphis domestica ENSMODG00000028774 I 0.924
VDR Microcebus murinus ENSMICG00000009017 I 0.924
VDR Tupaia belangeri ENSTBEG00000005717 I 0.924
VDR Homo sapiens ENSG00000111424 D 0.924
VDR Felis catus ENSFCAG00000024594 I 0.924
VDR Otolemur garnettii ENSOGAG00000005480 I 0.924
VDR Oryctolagus cuniculus ENSOCUG00000027507 I 0.924
ENSOARG00000019372 Ovis aries ENSOARG00000019372 I 0.924
ENSMEUG00000014791 Macropus eugenii ENSMEUG00000014791 I 0.924
ENSPMAG00000003695 Petromyzon marinus ENSPMAG00000003695 I 0.910
vdra Tetraodon nigroviridis ENSTNIG00000005559 I 0.909
nr1i2 Tetraodon nigroviridis ENSTNIG00000013932 I 0.909
ENSPSIG00000004437 Pelodiscus sinensis ENSPSIG00000004437 I 0.906
Alligator_sinensis_CCG006068.1 Alligator sinensis Alligator_sinensis_CCG006068.1 I 0.905
Cmyd_10001928 Chelonia mydas Cmyd_10001928 I 0.902
ENSACAG00000001535 Anolis carolinensis ENSACAG00000001535 I 0.885
Q9DFH3_CHICK Gallus gallus Q9DFH3_CHICK I 0.883
ENSGALG00000028624 Gallus gallus ENSGALG00000028624 D 0.883
Ogr03312 Ophisaurus gracilis Ogr03312 I 0.881
Pvit_09404 Pogona vitticeps Pvit_09404 I 0.874
Pvit_09406 Pogona vitticeps Pvit_09406 I 0.874
nr1i2 Takifugu rubripes ENSTRUG00000003245 I 0.858
ENSTSYG00000003990 Tarsius syrichta ENSTSYG00000003990 I 0.854
Alligator_sinensis_CCG005392.1 Alligator sinensis Alligator_sinensis_CCG005392.1 I 0.854
NR1I3 Cavia porcellus ENSCPOG00000015331 I 0.850
ENSOARG00000019817 Ovis aries ENSOARG00000019817 I 0.844
ENSSTOG00000003818 Ictidomys tridecemlineatus ENSSTOG00000003818 I 0.844
NR1I3 Homo sapiens ENSG00000143257 D 0.840
ENSNLEG00000014287 Nomascus leucogenys ENSNLEG00000014287 I 0.840
NR1I3 Pan troglodytes ENSPTRG00000001582 I 0.840
NR1I3 Callithrix jacchus ENSCJAG00000004783 I 0.840
NR1I3 Gorilla gorilla ENSGGOG00000005724 I 0.838
ENSPFOG00000007256 Poecilia formosa ENSPFOG00000007256 I 0.835
ENSCSAG00000002676 Chlorocebus sabaeus ENSCSAG00000002676 I 0.834
ENSP00000356959 Macaca fascicularis ENSP00000356959 I 0.834
NR1I3 Macaca mulatta ENSMMUG00000018128 I 0.834
ENSPANG00000014194 Papio anubis ENSPANG00000014194 I 0.834
NR1I3 Sorex araneus ENSSARG00000002684 I 0.833
D917_00700 Trichinella nativa D917_00700 I 0.832
TMUE_s0008014200 Trichuris muris TMUE_s0008014200 I 0.832
EFV58098 Trichinella spiralis EFV58098 I 0.832
D918_02615 Trichuris suis D918_02615 I 0.832
nr1i3 Xenopus tropicalis XB-GENE-479859 I 0.830
NR1I3 Otolemur garnettii ENSOGAG00000013738 I 0.826
SNAPOd2T00001873001 Oikopleura dioica SNAPOd2T00001873001 I 0.825
ENSAMEG00000015383 Ailuropoda melanoleuca ENSAMEG00000015383 I 0.824
ENSCSAVG00000008466 Ciona savignyi ENSCSAVG00000008466 I 0.822
ENSDORG00000001701 Dipodomys ordii ENSDORG00000001701 I 0.822
Nr1i3 Rattus norvegicus ENSRNOG00000003260 I 0.818
Nr1i3 Mus musculus ENSMUSG00000005677 D 0.818
nr1i2 Oryzias latipes ENSORLG00000017953 I 0.809
ENSXMAG00000003990 Xiphophorus maculatus ENSXMAG00000003990 I 0.807
ENSMEUG00000001987 Macropus eugenii ENSMEUG00000001987 I 0.793
ENSSHAG00000016687 Sarcophilus harrisii ENSSHAG00000016687 I 0.789
NR1I3 Dasypus novemcinctus ENSDNOG00000045179 I 0.786
SMU15000518 Schmidtea mediterranea SMU15000518 I 0.785
tetur01g10970 Tetranychus urticae tetur01g10970 I 0.785
TELCIR_16351 Teladorsagia circumcincta TELCIR_16351 I 0.774
NBR_0001980401 Nippostrongylus brasiliensis NBR_0001980401 I 0.774
ACOC_0001278301 Angiostrongylus costaricensis ACOC_0001278301 I 0.774
HCOI00910600 Haemonchus contortus HCOI00910600 I 0.773
HCOI00433800 Haemonchus contortus HCOI00433800 I 0.773
ANCCAN_11234 Ancylostoma caninum ANCCAN_11234 I 0.770
NECAME_11142 Necator americanus NECAME_11142 I 0.770
ENSPANG00000004760 Papio anubis ENSPANG00000004760 I 0.764
ENSCSAG00000007092 Chlorocebus sabaeus ENSCSAG00000007092 I 0.764
ENSPPYG00000013508 Pongo abelii ENSPPYG00000013508 I 0.764
NR1I3 Loxodonta africana ENSLAFG00000001180 I 0.758
NR1I3 Procavia capensis ENSPCAG00000013933 I 0.758
ENSPMAG00000008742 Petromyzon marinus ENSPMAG00000008742 I 0.756
nLs.2.1.2.g05295 Litomosoides sigmodontis nLs.2.1.2.g05295 I 0.755
nAv.1.0.1.g02667 Acanthocheilonema viteae nAv.1.0.1.g02667 I 0.755
OFLC_0000511401 Onchocerca flexuosa OFLC_0000511401 I 0.755
Bm2982 Brugia malayi Bm2982 I 0.755
WBGene00245913 Onchocerca volvulus WBGene00245913 I 0.755
nOo.2.0.1.g07306 Onchocerca ochengi nOo.2.0.1.g07306 I 0.755
GPUH_0000103801 Gongylonema pulchrum GPUH_0000103801 I 0.755
BTMF_0001180601 Brugia timori BTMF_0001180601 I 0.755
LOAG_16842 Loa loa LOAG_16842 I 0.755
EEL_0000192101 Elaeophora elaphi EEL_0000192101 I 0.755
WUBG_00356 Wuchereria bancrofti WUBG_00356 I 0.755
DME_0000391501 Dracunculus medinensis DME_0000391501 I 0.755
TCNE_0001577801 Toxocara canis TCNE_0001577801 I 0.753
NR1I3 Canis familiaris ENSCAFG00000012921 I 0.753
TCLT_0000569201 Thelazia callipaeda TCLT_0000569201 I 0.753
ASU_11275 Ascaris suum ASU_11275 I 0.753
NR1I3 Oryctolagus cuniculus ENSOCUG00000013537 I 0.750
THRA Echinops telfairi ENSETEG00000013166 I 0.749
thraa Danio rerio ENSDARG00000000151 I 0.749
DICVIV_05958 Dictyocaulus viviparus DICVIV_05958 I 0.747