vdra (Tetraodon nigroviridis)
Nuclear receptor

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00105 (zf-C4) IPR001628 ENSTNIG00000005559 T304976_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ENSPMAG00000000180
M02403_2.00 		Petromyzon marinus
RGKWCRN
NYGWMCY		 PBM
Weirauch et al.(2014)
pTH5509 		0.973 0.757
VDR
M03363_2.00 		Homo sapiens
GRGTTCAYHGRGTTCA
TGAACYCDRTGAACYC		 SELEX
Jolma et al.(2013)
VDR_1 		0.961 0.800
Vdr
M03429_2.00 		Mus musculus
RRGTTCAYHGRGTTCA
TGAACYCDRTGAACYY		 SELEX
Jolma et al.(2013)
Vdr_1 		0.961 0.800
VDR
M05877_2.00 		Homo sapiens
HRRGTTCA
TGAACYYD		 SMiLE-seq
Isakova et al.(2017)
VDR 		0.961 0.800
VDR
M09269_2.00 		Homo sapiens
NRGGKCANNGRGKKCR
YGMMCYCNNTGMCCYN		 Misc
Kulakovskiy et al.(2013)
VDR_HUMAN.H11MO.0.A 		0.961 0.800
Vdr
M09315_2.00 		Mus musculus
NRGGKCANNGRGKKCR
YGMMCYCNNTGMCCYN		 Misc
Kulakovskiy et al.(2013)
VDR_MOUSE.H11MO.0.A 		0.961 0.800
VDR
M09606_2.00 		Homo sapiens
NRRGGTCANNRRGKKCANNN
NNNTGMMCYYNNTGACCYYN		 Misc
Heinz et al.(2010)
GM10855-VDR+vitD_GSE22484 		0.961 0.800
VDR
M11116_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$VDR_Q3 		0.961 0.800
VDR
M11117_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$VDR_Q6_01 		0.961 0.800
VDR
M11118_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$VDR_Q6 		0.961 0.800
NR1I2
M03925_2.00 		Homo sapiens
RGKKCRNNVRGKKCR
YGMMCYBNNYGMMCY		 SELEX
Nitta et al.(2015)
NR1I2_1 		0.922 0.586
NR1I2
M05625_2.00 		Homo sapiens
VRGTTCRNNSRGKTCRH
DYGAMCYSNNYGAACYB		 SELEX
Yin et al.(2017)
NR1I2_eDBD_HT-SELEX 		0.922 0.586
NR1I2
M09283_2.00 		Homo sapiens
DDRRBTYMDNNRAGKTCAN
NTGAMCTYNNHKRAVYYHH		 Misc
Kulakovskiy et al.(2013)
NR1I2_HUMAN.H11MO.0.C 		0.922 0.586
NR1I2
M05626_2.00 		Homo sapiens
VRGKKCRNNVRGKKCRN
NYGMMCYBNNYGMMCYB		 SELEX
Yin et al.(2017)
NR1I2_eDBD_Methyl-HT-SELEX 		0.922 0.586
Nr1i2
M09316_2.00 		Mus musculus
DDRRBTYMDNNRAGKTCAN
NTGAMCTYNNHKRAVYYHH		 Misc
Kulakovskiy et al.(2013)
NR1I2_MOUSE.H11MO.0.C 		0.828 0.571
ENSGALG00000028624
M02398_2.00 		Gallus gallus
GRGKTCAH
DTGAMCYC		 PBM
Weirauch et al.(2014)
pTH6492 		0.816 0.571
NR1I3
M03924_2.00 		Homo sapiens
RGKDYRNNNNRGKKYR
YRMMCYNNNNYRHMCY		 SELEX
Nitta et al.(2015)
NR1I3_1 		0.752 0.600
NR1I3
M05619_2.00 		Homo sapiens
WDAGTTCAH
DTGAACTHW		 SELEX
Yin et al.(2017)
NR1I3_FL_HT-SELEX 		0.752 0.600
NR1I3
M09281_2.00 		Homo sapiens
DRGGTCANNNRAGTTYAN
NTRAACTYNNNTGACCYH		 Misc
Kulakovskiy et al.(2013)
NR1I3_HUMAN.H11MO.0.C 		0.752 0.600
NR1I3
M05620_2.00 		Homo sapiens
WDAGTTCRN
NYGAACTHW		 SELEX
Yin et al.(2017)
NR1I3_FL_Methyl-HT-SELEX 		0.752 0.600
For this family, TFs with SR scores > 0.745 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSTNIP00000008258 Nuclear receptor 33 103

Links

Other Nuclear receptor family TFs
Other Tetraodon nigroviridis TFs

151 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
vdrb Takifugu rubripes ENSTRUG00000011576 I 0.973
vdrb Tetraodon nigroviridis ENSTNIG00000007031 I 0.973
vdra Takifugu rubripes ENSTRUG00000011907 I 0.973
ENSGMOG00000012720 Gadus morhua ENSGMOG00000012720 I 0.973
ENSXMAG00000004608 Xiphophorus maculatus ENSXMAG00000004608 I 0.973
vdralpha Oryzias latipes ENSORLG00000001063 I 0.973
vdr Oryzias latipes ENSORLG00000016402 I 0.973
vdrb Danio rerio ENSDARG00000070721 I 0.973
vdrb Gasterosteus aculeatus ENSGACG00000007975 I 0.973
ENSPFOG00000014233 Poecilia formosa ENSPFOG00000014233 I 0.973
ENSPFOG00000001655 Poecilia formosa ENSPFOG00000001655 I 0.973
vdra Gasterosteus aculeatus ENSGACG00000004763 I 0.973
ENSPMAG00000000180 Petromyzon marinus ENSPMAG00000000180 D 0.973
ENSXMAG00000018707 Xiphophorus maculatus ENSXMAG00000018707 I 0.973
ENSLOCG00000005194 Lepisosteus oculatus ENSLOCG00000005194 I 0.973
ENSONIG00000019378 Oreochromis niloticus ENSONIG00000019378 I 0.973
ENSAMXG00000012991 Astyanax mexicanus ENSAMXG00000012991 I 0.973
ENSONIG00000009200 Oreochromis niloticus ENSONIG00000009200 I 0.973
ENSAMXG00000019854 Astyanax mexicanus ENSAMXG00000019854 I 0.973
ENSGMOG00000019451 Gadus morhua ENSGMOG00000019451 I 0.973
VDR Anolis carolinensis ENSACAG00000013485 I 0.972
Pvit_07440 Pogona vitticeps Pvit_07440 I 0.972
ENSLACG00000019104 Latimeria chalumnae ENSLACG00000019104 I 0.972
ENSPSIG00000018108 Pelodiscus sinensis ENSPSIG00000018108 I 0.970
Cmyd_10006875 Chelonia mydas Cmyd_10006875 I 0.970
vdr.S Xenopus laevis XB-GENE-864847 I 0.966
vdr Xenopus tropicalis XB-GENE-486505 I 0.965
VDR Taeniopygia guttata ENSTGUG00000017093 I 0.962
ENSGALG00000026166 Gallus gallus ENSGALG00000026166 I 0.962
Aan_R009572 Calypte anna Aan_R009572 I 0.962
Gfo_R005027 Geospiza fortis Gfo_R005027 I 0.962
VDR Meleagris gallopavo ENSMGAG00000004846 I 0.962
ENSMPUG00000000419 Mustela putorius furo ENSMPUG00000000419 I 0.961
ENSMODG00000028774 Monodelphis domestica ENSMODG00000028774 I 0.961
VDR Macaca mulatta ENSMMUG00000006727 I 0.961
Vdr Mus musculus ENSMUSG00000022479 D 0.961
VDR Myotis lucifugus ENSMLUG00000000912 I 0.961
VDR Microcebus murinus ENSMICG00000009017 I 0.961
ENSMEUG00000014791 Macropus eugenii ENSMEUG00000014791 I 0.961
ENSPPYG00000004448 Pongo abelii ENSPPYG00000004448 I 0.961
VDR Tupaia belangeri ENSTBEG00000005717 I 0.961
ENSSTOG00000026741 Ictidomys tridecemlineatus ENSSTOG00000026741 I 0.961
VDR Tursiops truncatus ENSTTRG00000012578 I 0.961
ENSMMUP00000008847 Macaca fascicularis ENSMMUP00000008847 I 0.961
Myotis_brandtii_VDR_10022134 Myotis brandtii Myotis_brandtii_VDR_10022134 I 0.961
ENSP00000229022-D1 Bos grunniens ENSP00000229022-D1 I 0.961
VDR Sus scrofa ENSSSCG00000020864 I 0.961
Vdr Rattus norvegicus ENSRNOG00000054420 I 0.961
VDR Otolemur garnettii ENSOGAG00000005480 I 0.961
VDR Oryctolagus cuniculus ENSOCUG00000027507 I 0.961
ENSPANG00000011327 Papio anubis ENSPANG00000011327 I 0.961
VDR Loxodonta africana ENSLAFG00000006418 I 0.961
VDR Pteropus vampyrus ENSPVAG00000011085 I 0.961
ENSOARG00000019372 Ovis aries ENSOARG00000019372 I 0.961
ENSNLEG00000017900 Nomascus leucogenys ENSNLEG00000017900 I 0.961
VDR Dasypus novemcinctus ENSDNOG00000039161 I 0.961
VDR Equus caballus ENSECAG00000015822 I 0.961
VDR Erinaceus europaeus ENSEEUG00000011116 I 0.961
VDR Felis catus ENSFCAG00000024594 I 0.961
ENSCPOG00000006025 Cavia porcellus ENSCPOG00000006025 I 0.961
VDR Callithrix jacchus ENSCJAG00000015018 I 0.961
ENSAMEG00000013706 Ailuropoda melanoleuca ENSAMEG00000013706 I 0.961
VDR Bos taurus ENSBTAG00000016414 I 0.961
VDR Canis familiaris ENSCAFG00000009103 I 0.961
ENSCHOG00000008514 Choloepus hoffmanni ENSCHOG00000008514 I 0.961
VDR Homo sapiens ENSG00000111424 D 0.961
ENSCSAG00000006576 Chlorocebus sabaeus ENSCSAG00000006576 I 0.961
VDR Gorilla gorilla ENSGGOG00000016473 I 0.961
Afo_R013462 Aptenodytes forsteri Afo_R013462 I 0.959
ENSPMAG00000003695 Petromyzon marinus ENSPMAG00000003695 I 0.954
ENSLACG00000010334 Latimeria chalumnae ENSLACG00000010334 I 0.942
vdr-a Ciona intestinalis ENSCING00000020740 I 0.929
ENSAMXG00000008863 Astyanax mexicanus ENSAMXG00000008863 I 0.923
NR1I2 Myotis lucifugus ENSMLUG00000002877 I 0.922
NR1I2 Pan troglodytes ENSPTRG00000015263 I 0.922
Myotis_brandtii_NR1I2_10031787 Myotis brandtii Myotis_brandtii_NR1I2_10031787 I 0.922
ENSP00000336528 Macaca fascicularis ENSP00000336528 I 0.922
NR1I2 Gorilla gorilla ENSGGOG00000007361 I 0.922
NR1I2 Equus caballus ENSECAG00000008728 I 0.922
ENSAMEG00000007006 Ailuropoda melanoleuca ENSAMEG00000007006 I 0.922
NR1I2 Otolemur garnettii ENSOGAG00000006017 I 0.922
NR1I2 Echinops telfairi ENSETEG00000018117 I 0.922
NR1I2 Macaca mulatta ENSMMUG00000001976 I 0.922
NR1I2 Homo sapiens ENSG00000144852 D 0.922
NR1I2 Callithrix jacchus ENSCJAG00000008854 I 0.922
ENSNLEG00000005060 Nomascus leucogenys ENSNLEG00000005060 I 0.922
NR1I2 Felis catus ENSFCAG00000006092 I 0.922
ENSTSYG00000010757 Tarsius syrichta ENSTSYG00000010757 I 0.922
nr1i2.S Xenopus laevis XB-GENE-865343 I 0.921
nr1i2.L Xenopus laevis XB-GENE-17336519 I 0.919
ENSP00000336528-D1 Bos grunniens ENSP00000336528-D1 I 0.909
NR1I2 Sus scrofa ENSSSCG00000011890 I 0.909
NR1I2 Bos taurus ENSBTAG00000019557 I 0.908
nr1i2 Danio rerio ENSDARG00000029766 I 0.903
ENSCSAVG00000001918 Ciona savignyi ENSCSAVG00000001918 I 0.902
ENSSHAG00000004437 Sarcophilus harrisii ENSSHAG00000004437 I 0.900
ENSTSYG00000003990 Tarsius syrichta ENSTSYG00000003990 I 0.899
Alligator_sinensis_CCG005392.1 Alligator sinensis Alligator_sinensis_CCG005392.1 I 0.897
NR1I2 Pteropus vampyrus ENSPVAG00000000884 I 0.894
NR1I2 Procavia capensis ENSPCAG00000009674 I 0.886
NR1I2 Loxodonta africana ENSLAFG00000007829 I 0.883
ENSMEUG00000000113 Macropus eugenii ENSMEUG00000000113 I 0.881
NR1I2 Canis familiaris ENSCAFG00000011094 I 0.860
ENSPSIG00000004437 Pelodiscus sinensis ENSPSIG00000004437 I 0.851
Cmyd_10001928 Chelonia mydas Cmyd_10001928 I 0.850
Alligator_sinensis_CCG006068.1 Alligator sinensis Alligator_sinensis_CCG006068.1 I 0.848
Pvit_09404 Pogona vitticeps Pvit_09404 I 0.844
Pvit_09406 Pogona vitticeps Pvit_09406 I 0.844
NR1I2 Oryctolagus cuniculus ENSOCUG00000006125 I 0.834
NR1I2 Ochotona princeps ENSOPRG00000010448 I 0.834
Ogr03312 Ophisaurus gracilis Ogr03312 I 0.834
ENSCSAVG00000008466 Ciona savignyi ENSCSAVG00000008466 I 0.832
ENSACAG00000001535 Anolis carolinensis ENSACAG00000001535 I 0.832
Nr1i2 Dipodomys ordii ENSDORG00000003966 I 0.828
Nr1i2 Mus musculus ENSMUSG00000022809 D 0.828
ENSSTOG00000014988 Ictidomys tridecemlineatus ENSSTOG00000014988 I 0.828
Nr1i2 Rattus norvegicus ENSRNOG00000002906 I 0.828
NR1I2 Cavia porcellus ENSCPOG00000020161 I 0.828
SNAPOd2T00001873001 Oikopleura dioica SNAPOd2T00001873001 I 0.820
ENSGALG00000028624 Gallus gallus ENSGALG00000028624 D 0.816
Q9DFH3_CHICK Gallus gallus Q9DFH3_CHICK I 0.816
LotgiG138244 Lottia gigantea LotgiG138244 I 0.792
NR1I3 Sorex araneus ENSSARG00000002684 I 0.788
ENSMEUG00000001987 Macropus eugenii ENSMEUG00000001987 I 0.780
SMUV_0000490601 Syphacia muris SMUV_0000490601 I 0.775
ENSSTOG00000003818 Ictidomys tridecemlineatus ENSSTOG00000003818 I 0.775
ENSP00000356959-D1 Bos grunniens ENSP00000356959-D1 I 0.769
NR1I3 Bos taurus ENSBTAG00000009215 I 0.769
NR1I3 Sus scrofa ENSSSCG00000006353 I 0.769
ENSSHAG00000016687 Sarcophilus harrisii ENSSHAG00000016687 I 0.769
NR1I3 Loxodonta africana ENSLAFG00000001180 I 0.767
NR1I3 Oryctolagus cuniculus ENSOCUG00000013537 I 0.767
NR1I3 Equus caballus ENSECAG00000020930 I 0.767
NR1I3 Procavia capensis ENSPCAG00000013933 I 0.767
ENSAMEG00000015383 Ailuropoda melanoleuca ENSAMEG00000015383 I 0.766
NR1I3 Pteropus vampyrus ENSPVAG00000005540 I 0.765
nr1i3 Xenopus tropicalis XB-GENE-479859 I 0.764
ENSMPUG00000014388 Mustela putorius furo ENSMPUG00000014388 I 0.763
NR1I3 Canis familiaris ENSCAFG00000012921 I 0.763
CRE05136 Caenorhabditis remanei CRE05136 N 0.757
NR1I3 Felis catus ENSFCAG00000000497 I 0.756
NR1I3 Homo sapiens ENSG00000143257 D 0.752
ENSNLEG00000014287 Nomascus leucogenys ENSNLEG00000014287 I 0.752
NR1I3 Pan troglodytes ENSPTRG00000001582 I 0.752
NR1I3 Ochotona princeps ENSOPRG00000003455 I 0.750
NR1I3 Cavia porcellus ENSCPOG00000015331 I 0.749
NR1I3 Gorilla gorilla ENSGGOG00000005724 I 0.749
NR1I3 Callithrix jacchus ENSCJAG00000004783 I 0.748
NR1I3 Erinaceus europaeus ENSEEUG00000004981 I 0.747
NR1I3 Monodelphis domestica ENSMODG00000005089 I 0.746
CapteG222512 Capitella teleta CapteG222512 I 0.746