nr1i2 (Takifugu rubripes)
Nuclear receptor

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00105 (zf-C4) IPR001628 ENSTRUG00000003245 T305042_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Nr1i2
M09316_2.00 		Mus musculus
DDRRBTYMDNNRAGKTCAN
NTGAMCTYNNHKRAVYYHH		 Misc
Kulakovskiy et al.(2013)
NR1I2_MOUSE.H11MO.0.C 		0.893 0.643
NR1I2
M03925_2.00 		Homo sapiens
RGKKCRNNVRGKKCR
YGMMCYBNNYGMMCY		 SELEX
Nitta et al.(2015)
NR1I2_1 		0.880 0.643
NR1I2
M05625_2.00 		Homo sapiens
VRGTTCRNNSRGKTCRH
DYGAMCYSNNYGAACYB		 SELEX
Yin et al.(2017)
NR1I2_eDBD_HT-SELEX 		0.880 0.643
NR1I2
M09283_2.00 		Homo sapiens
DDRRBTYMDNNRAGKTCAN
NTGAMCTYNNHKRAVYYHH		 Misc
Kulakovskiy et al.(2013)
NR1I2_HUMAN.H11MO.0.C 		0.880 0.643
NR1I2
M05626_2.00 		Homo sapiens
VRGKKCRNNVRGKKCRN
NYGMMCYBNNYGMMCYB		 SELEX
Yin et al.(2017)
NR1I2_eDBD_Methyl-HT-SELEX 		0.880 0.643
For this family, TFs with SR scores > 0.745 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSTRUP00000007607 Nuclear receptor 14 83
ENSTRUP00000007608 Nuclear receptor 24 93
ENSTRUP00000007609 Nuclear receptor 20 89

Links

Other Nuclear receptor family TFs
Other Takifugu rubripes TFs

44 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
nr1i2 Tetraodon nigroviridis ENSTNIG00000013932 I 0.960
ENSPFOG00000007256 Poecilia formosa ENSPFOG00000007256 I 0.925
nr1i2 Oryzias latipes ENSORLG00000017953 I 0.912
ENSXMAG00000003990 Xiphophorus maculatus ENSXMAG00000003990 I 0.911
NR1I2 Ochotona princeps ENSOPRG00000010448 I 0.905
Nr1i2 Rattus norvegicus ENSRNOG00000002906 I 0.893
Nr1i2 Mus musculus ENSMUSG00000022809 D 0.893
Nr1i2 Dipodomys ordii ENSDORG00000003966 I 0.893
ENSSTOG00000014988 Ictidomys tridecemlineatus ENSSTOG00000014988 I 0.893
NR1I2 Cavia porcellus ENSCPOG00000020161 I 0.893
Myotis_brandtii_NR1I2_10031787 Myotis brandtii Myotis_brandtii_NR1I2_10031787 I 0.890
NR1I2 Myotis lucifugus ENSMLUG00000002877 I 0.890
ENSAMEG00000007006 Ailuropoda melanoleuca ENSAMEG00000007006 I 0.880
NR1I2 Macaca mulatta ENSMMUG00000001976 I 0.880
ENSTSYG00000010757 Tarsius syrichta ENSTSYG00000010757 I 0.880
NR1I2 Pan troglodytes ENSPTRG00000015263 I 0.880
ENSP00000336528 Macaca fascicularis ENSP00000336528 I 0.880
ENSNLEG00000005060 Nomascus leucogenys ENSNLEG00000005060 I 0.880
NR1I2 Homo sapiens ENSG00000144852 D 0.880
NR1I2 Echinops telfairi ENSETEG00000018117 I 0.880
NR1I2 Equus caballus ENSECAG00000008728 I 0.880
NR1I2 Callithrix jacchus ENSCJAG00000008854 I 0.880
NR1I2 Gorilla gorilla ENSGGOG00000007361 I 0.880
NR1I2 Felis catus ENSFCAG00000006092 I 0.880
nr1i2 Danio rerio ENSDARG00000029766 I 0.871
NR1I2 Bos taurus ENSBTAG00000019557 I 0.860
NR1I2 Sus scrofa ENSSSCG00000011890 I 0.858
ENSP00000336528-D1 Bos grunniens ENSP00000336528-D1 I 0.858
NR1I2 Pteropus vampyrus ENSPVAG00000000884 I 0.840
NR1I2 Oryctolagus cuniculus ENSOCUG00000006125 I 0.837
nr1i2.L Xenopus laevis XB-GENE-17336519 I 0.827
nr1i2.S Xenopus laevis XB-GENE-865343 I 0.827
NR1I2 Canis familiaris ENSCAFG00000011094 I 0.823
ENSAMXG00000008863 Astyanax mexicanus ENSAMXG00000008863 I 0.816
NR1I2 Otolemur garnettii ENSOGAG00000006017 I 0.813
ENSLACG00000010334 Latimeria chalumnae ENSLACG00000010334 I 0.809
ENSSHAG00000004437 Sarcophilus harrisii ENSSHAG00000004437 I 0.800
ENSCSAVG00000001918 Ciona savignyi ENSCSAVG00000001918 I 0.791
NR1I2 Procavia capensis ENSPCAG00000009674 I 0.777
vdr-a Ciona intestinalis ENSCING00000020740 I 0.777
Alligator_sinensis_CCG006068.1 Alligator sinensis Alligator_sinensis_CCG006068.1 I 0.770
ENSMEUG00000000113 Macropus eugenii ENSMEUG00000000113 I 0.767
NR1I2 Loxodonta africana ENSLAFG00000007829 I 0.752