vdra (Takifugu rubripes)
Nuclear receptor

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00105 (zf-C4) IPR001628 ENSTRUG00000011907 T305080_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ENSPMAG00000000180
M02403_2.00
Petromyzon marinus
RGKWCRN

NYGWMCY
PBM
Weirauch et al.(2014)
pTH5509
0.990 0.912
VDR
M03363_2.00
Homo sapiens
GRGTTCAYHGRGTTCA

TGAACYCDRTGAACYC
SELEX
Jolma et al.(2013)
VDR_1
0.985 0.928
Vdr
M03429_2.00
Mus musculus
RRGTTCAYHGRGTTCA

TGAACYCDRTGAACYY
SELEX
Jolma et al.(2013)
Vdr_1
0.985 0.928
VDR
M05877_2.00
Homo sapiens
HRRGTTCA

TGAACYYD
SMiLE-seq
Isakova et al.(2017)
VDR
0.985 0.928
VDR
M09269_2.00
Homo sapiens
NRGGKCANNGRGKKCR

YGMMCYCNNTGMCCYN
Misc
Kulakovskiy et al.(2013)
VDR_HUMAN.H11MO.0.A
0.985 0.929
Vdr
M09315_2.00
Mus musculus
NRGGKCANNGRGKKCR

YGMMCYCNNTGMCCYN
Misc
Kulakovskiy et al.(2013)
VDR_MOUSE.H11MO.0.A
0.985 0.929
VDR
M09606_2.00
Homo sapiens
NRRGGTCANNRRGKKCANNN

NNNTGMMCYYNNTGACCYYN
Misc
Heinz et al.(2010)
GM10855-VDR+vitD_GSE22484
0.985 0.926
VDR
M11116_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$VDR_Q3
0.985 0.926
VDR
M11117_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$VDR_Q6_01
0.985 0.926
VDR
M11118_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$VDR_Q6
0.985 0.928
NR1I2
M03925_2.00
Homo sapiens
RGKKCRNNVRGKKCR

YGMMCYBNNYGMMCY
SELEX
Nitta et al.(2015)
NR1I2_1
0.953 0.681
NR1I2
M05625_2.00
Homo sapiens
VRGTTCRNNSRGKTCRH

DYGAMCYSNNYGAACYB
SELEX
Yin et al.(2017)
NR1I2_eDBD_HT-SELEX
0.953 0.681
NR1I2
M09283_2.00
Homo sapiens
DDRRBTYMDNNRAGKTCAN

NTGAMCTYNNHKRAVYYHH
Misc
Kulakovskiy et al.(2013)
NR1I2_HUMAN.H11MO.0.C
0.953 0.671
NR1I2
M05626_2.00
Homo sapiens
VRGKKCRNNVRGKKCRN

NYGMMCYBNNYGMMCYB
SELEX
Yin et al.(2017)
NR1I2_eDBD_Methyl-HT-SELEX
0.953 0.671
ENSGALG00000028624
M02398_2.00
Gallus gallus
GRGKTCAH

DTGAMCYC
PBM
Weirauch et al.(2014)
pTH6492
0.913 0.662
Nr1i2
M09316_2.00
Mus musculus
DDRRBTYMDNNRAGKTCAN

NTGAMCTYNNHKRAVYYHH
Misc
Kulakovskiy et al.(2013)
NR1I2_MOUSE.H11MO.0.C
0.880 0.647
NR1I3
M03924_2.00
Homo sapiens
RGKDYRNNNNRGKKYR

YRMMCYNNNNYRHMCY
SELEX
Nitta et al.(2015)
NR1I3_1
0.835 0.647
NR1I3
M05619_2.00
Homo sapiens
WDAGTTCAH

DTGAACTHW
SELEX
Yin et al.(2017)
NR1I3_FL_HT-SELEX
0.835 0.638
NR1I3
M09281_2.00
Homo sapiens
DRGGTCANNNRAGTTYAN

NTRAACTYNNNTGACCYH
Misc
Kulakovskiy et al.(2013)
NR1I3_HUMAN.H11MO.0.C
0.835 0.638
NR1I3
M05620_2.00
Homo sapiens
WDAGTTCRN

NYGAACTHW
SELEX
Yin et al.(2017)
NR1I3_FL_Methyl-HT-SELEX
0.835 0.638
Nr1i3
M09302_2.00
Mus musculus
DRGGTCANNNRAGTTYAN

NTRAACTYNNNTGACCYH
Misc
Kulakovskiy et al.(2013)
NR1I3_MOUSE.H11MO.0.C
0.808 0.586
nr1h5.S
M11194_2.00
Xenopus laevis Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$FXRIR1_Q6
0.805 0.543
EcR
M06414_2.00
Drosophila melanogaster
RAGGTCAW

WTGACCTY
B1H
Zhu et al.(2011)
EcR_SANGER_5_FBgn0000546
0.801 0.544
THRB
M03379_2.00
Homo sapiens
DTGACCTBATVAGGTCAN

NTGACCTBATVAGGTCAH
SELEX
Jolma et al.(2013)
THRB_1
0.795 0.529
THRB
M03380_2.00
Homo sapiens
DTGACCTBANTRAGGTCAH

DTGACCTYANTVAGGTCAH
SELEX
Jolma et al.(2013)
THRB_2
0.795 0.529
THRB
M03381_2.00
Homo sapiens
NTGWCCTYADNTRAGGTCAH

DTGACCTYANHTRAGGWCAN
SELEX
Jolma et al.(2013)
THRB_3
0.795 0.522
THRB
M05629_2.00
Homo sapiens
NRGGTCAAAGGTCRN

NYGACCTTTGACCYN
SELEX
Yin et al.(2017)
THRB_eDBD_HT-SELEX_1
0.795 0.522
THRB
M05630_2.00
Homo sapiens
NRRGGTCAYGACCYYN

NRRGGTCRTGACCYYN
SELEX
Yin et al.(2017)
THRB_eDBD_HT-SELEX_2
0.795 0.522
THRB
M05633_2.00
Homo sapiens
NTGWCCTBRNYVAGGWCAN

NTGWCCTBRNYVAGGWCAN
SELEX
Yin et al.(2017)
THRB_FL_HT-SELEX_1
0.795 0.514
THRB
M05634_2.00
Homo sapiens
TRAGGTCABVYVAGGTCAH

DTGACCTBRBVTGACCTYA
SELEX
Yin et al.(2017)
THRB_FL_HT-SELEX_2
0.795 0.514
THRB
M09285_2.00
Homo sapiens
VRVSYVABVKSAGGWCA

TGWCCTSMBVTBRSBYB
Misc
Kulakovskiy et al.(2013)
THB_HUMAN.H11MO.0.C
0.795 0.529
THRB
M11150_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$T3RBETA_Q6_01
0.795 0.529
THRB
M05631_2.00
Homo sapiens
NRGGTYRDRGGKYRN

NYRMCCYHYRACCYN
SELEX
Yin et al.(2017)
THRB_eDBD_Methyl-HT-SELEX_1
0.795 0.529
THRB
M05632_2.00
Homo sapiens
NNRGGTCAYGACCYBN

NVRGGTCRTGACCYNN
SELEX
Yin et al.(2017)
THRB_eDBD_Methyl-HT-SELEX_2
0.795 0.522
THRB
M05635_2.00
Homo sapiens
NTGWCCTBRNYVAGGWCAN

NTGWCCTBRNYVAGGWCAN
SELEX
Yin et al.(2017)
THRB_FL_Methyl-HT-SELEX_1
0.795 0.522
THRB
M05636_2.00
Homo sapiens
YRAGGWCAYGYRAGGWCAH

DTGWCCTYRCRTGWCCTYR
SELEX
Yin et al.(2017)
THRB_FL_Methyl-HT-SELEX_2
0.795 0.522
GAG_AVIER
M11193_2.00
Avian erythroblastosis virus
VHNTRAGGTCACSSNN

NNSSGTGACCTYANDB
Transfac
Matys et al.(2006)
V$T3R_01
0.794 0.500
THRA
M03368_2.00
Homo sapiens
DTGACCTYATVAGGTCAH

DTGACCTBATRAGGTCAH
SELEX
Jolma et al.(2013)
THRA_1
0.780 0.500
THRA
M09275_2.00
Homo sapiens
RGKWSDNNYVAGGWSAN

NTSWCCTBRNNHSWMCY
Misc
Kulakovskiy et al.(2013)
THA_HUMAN.H11MO.0.C
0.780 0.515
Thra
M09333_2.00
Mus musculus
VRGGKCANNYVRGGHCA

TGDCCYBRNNTGMCCYB
Misc
Kulakovskiy et al.(2013)
THA_MOUSE.H11MO.0.C
0.780 0.515
Thra
M09619_2.00
Mus musculus
GGKCANNYVRGGHCA

TGDCCYBRNNTGMCC
Misc
Heinz et al.(2010)
C17.2-THRa_GSE38347
0.780 0.515
THRA
M11135_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$T3RALPHA_Q6
0.780 0.507
Hr4
M06435_2.00
Drosophila melanogaster
AAGGTCA

TGACCTT
B1H
Zhu et al.(2011)
Hr4_SANGER_5_FBgn0023546
0.766 0.507
For this family, TFs with SR scores > 0.745 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSTRUP00000030103 Nuclear receptor 34 103
ENSTRUP00000030104 Nuclear receptor 27 96
ENSTRUP00000030105 Nuclear receptor 10 79
ENSTRUP00000030106 Nuclear receptor 6 75
ENSTRUP00000030107 Nuclear receptor 2 71
ENSTRUP00000030108 Nuclear receptor 1 70
ENSTRUP00000030109 Nuclear receptor 1 69
ENSTRUP00000030110 Nuclear receptor 1 69
ENSTRUP00000030111 Nuclear receptor 1 68

Links

Other Nuclear receptor family TFs
Other Takifugu rubripes TFs

551 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
NCU05637 Neurospora crassa NCU05637 D 0.000
PMAA_011030 Penicillium marneffei PMAA_011030 I 0.000
SAPIO_CDS9377 Scedosporium apiospermum SAPIO_CDS9377 I 0.000
PV11_03606 Exophiala sideris PV11_03606 I 0.000
PV10_00855 Exophiala mesophila PV10_00855 I 0.000
PV09_00512 Verruconis gallopava PV09_00512 I 0.000
PV08_03176 Exophiala spinifera PV08_03176 I 0.000
PV07_02793 Cladophialophora immunda PV07_02793 I 0.000
PV06_04883 Exophiala oligosperma PV06_04883 I 0.000
PV05_07246 Exophiala xenobiotica PV05_07246 I 0.000
PV04_02426 Capronia semiimmersa PV04_02426 I 0.000
PTT_11477 Pyrenophora teres PTT_11477 I 0.000
PMAA_011030 Talaromyces marneffei PMAA_011030 I 0.000
OIDMADRAFT_28300 Oidiodendron maius OIDMADRAFT_28300 I 0.000
NEUTE1DRAFT_148609 Neurospora tetrasperma NEUTE1DRAFT_148609 I 0.000
MPH_04494 Macrophomina phaseolina MPH_04494 I 0.000
MGYG_05848 Microsporum gypseum MGYG_05848 I 0.000
SBOR_0775 Sclerotinia borealis SBOR_0775 I 0.000
SETTUDRAFT_113025 Setosphaeria turcica SETTUDRAFT_113025 I 0.000
fgenesh1_pg.C_scaffold_9000354 Cryphonectria parasitica fgenesh1_pg.C_scaffold_9000354 I 0.000
AB03036.1 Alternaria brassicicola AB03036.1 I 0.000
Z519_11340 Cladophialophora bantiana Z519_11340 I 0.000
Z518_04811 Rhinocladiella mackenziei Z518_04811 I 0.000
Z518_01937 Rhinocladiella mackenziei Z518_01937 I 0.000
Z517_00407 Fonsecaea pedrosoi Z517_00407 I 0.000
VDBG_10032 Verticillium alfalfae VDBG_10032 I 0.000
V499_07415 Pseudogymnoascus pannorum V499_07415 I 0.000
UCRPA7_1223 Togninia minima UCRPA7_1223 I 0.000
UCREL1_4517 Eutypa lata UCREL1_4517 I 0.000
TSTA_006150 Talaromyces stipitatus TSTA_006150 I 0.000
TRV_07523 Trichophyton verrucosum TRV_07523 I 0.000
THITE_2126380 Thielavia terrestris THITE_2126380 I 0.000
TESG_07963 Trichophyton tonsurans TESG_07963 I 0.000
SNOG_11524 Phaeosphaeria nodorum SNOG_11524 I 0.000
MGG_07925 Magnaporthe oryzae MGG_07925 I 0.000
MCYG_06105 Arthroderma otae MCYG_06105 I 0.000
COCC4DRAFT_73197 Bipolaris maydis COCC4DRAFT_73197 I 0.000
Cob_11078 Colletotrichum orbiculare Cob_11078 I 0.000
Cob_09205 Colletotrichum orbiculare Cob_09205 I 0.000
CH063_07689 Colletotrichum higginsianum CH063_07689 I 0.000
CGGC5_1402 Colletotrichum gloeosporioides CGGC5_1402 I 0.000
CFIO01_06850 Colletotrichum fioriniae CFIO01_06850 I 0.000
Bcin01g10720 Botrytis cinerea Bcin01g10720 I 0.000
ARB_04706 Arthroderma benhamiae ARB_04706 I 0.000
AOL_s00193g129 Arthrobotrys oligospora AOL_s00193g129 I 0.000
A1O9_07137 Exophiala aquamarina A1O9_07137 I 0.000
A1O7_02244 Cladophialophora yegresii A1O7_02244 I 0.000
A1O5_10463 Cladophialophora psammophila A1O5_10463 I 0.000
A1O3_01201 Capronia epimyces A1O3_01201 I 0.000
A1O1_04217 Capronia coronata A1O1_04217 I 0.000
VDBG_10032 Verticillium albo atrum VDBG_10032 I 0.000
SNOG_11524 Stagonospora nodorum SNOG_11524 I 0.000
COCCADRAFT_6589 Bipolaris zeicola COCCADRAFT_6589 I 0.000
COCMIDRAFT_35701 Bipolaris oryzae COCMIDRAFT_35701 I 0.000
LEMA_P091860.1 Leptosphaeria maculans LEMA_P091860.1 I 0.000
HMPREF1541_00985 Cyphellophora europaea HMPREF1541_00985 I 0.000
HMPREF1120_08353 Exophiala dermatitidis HMPREF1120_08353 I 0.000
H105_02247 Trichophyton soudanense H105_02247 I 0.000
H102_02228 Trichophyton rubrum H102_02228 I 0.000
H101_03147 Trichophyton interdigitale H101_03147 I 0.000
H072_4417 Dactylellina haptotyla H072_4417 I 0.000
GSTUM_00005043001 Tuber melanosporum GSTUM_00005043001 I 0.000
GMDG_04247 Pseudogymnoascus destructans GMDG_04247 I 0.000
GLRG_06548 Colletotrichum graminicola GLRG_06548 I 0.000
GGTG_07647 Gaeumannomyces graminis GGTG_07647 I 0.000
G647_08755 Cladophialophora carrionii G647_08755 I 0.000
CTHT_0041740 Chaetomium thermophilum CTHT_0041740 I 0.000
COCVIDRAFT_36324 Bipolaris victoriae COCVIDRAFT_36324 I 0.000
COCSADRAFT_175469 Bipolaris sorokiniana COCSADRAFT_175469 I 0.000
MCYG_06105 Microsporum canis MCYG_06105 I 0.000
PODANS_4_5950 Podospora anserina PODANS_4_5950 N 0.000