CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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nr3c2
(
Takifugu rubripes
)
Nuclear receptor
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00105 (zf-C4)
IPR001628
ENSTRUG00000014871
T305085_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Nr3c1
M05886_2.00
Mus musculus
DGDACDBYNTGTNCY
RGNACANRVHGTHCH
SMiLE-seq
Isakova et al.(2017)
GR
0.989
0.871
NR3C1
M03366_2.00
Homo sapiens
NRGWACAYNRTGTWCYH
DRGWACAYNRTGTWCYN
SELEX
Jolma et al.(2013)
NR3C1_1
0.988
0.886
Nr3c1
M09318_2.00
Mus musculus
RGNACABYNTGTNCY
RGNACANRVTGTNCY
Misc
Kulakovskiy et al.(2013)
GCR_MOUSE.H11MO.0.A
0.989
0.871
NR3C1
M05587_2.00
Homo sapiens
RGDACAYWDTGTHCY
RGDACAHWRTGTHCY
SELEX
Yin et al.(2017)
NR3C1_eDBD_HT-SELEX
0.988
0.886
NR3C1
M07986_2.00
Homo sapiens
DGNACABYBTGTNC
GNACAVRVTGTNCH
ChIP-seq
Gerstein et al.(2012)
A549_GR_HudsonAlpha
0.988
0.886
Nr3c1
M09614_2.00
Mus musculus
NRGDACABNNTGTNC
GNACANNVTGTHCYN
Misc
Heinz et al.(2010)
RAW264.7-GRE_Unpublished
0.989
0.871
NR3C1
M07987_2.00
Homo sapiens
NNNNRGNACAYBBTGTHCYNN
NNRGDACAVVRTGTNCYNNNN
ChIP-seq
Gerstein et al.(2012)
ECC-1_GR_HudsonAlpha
0.988
0.886
NR3C2
M02395_2.00
Homo sapiens
NNRGDACAN
NTGTHCYNN
PBM
Weirauch et al.(2014)
pTH5924
0.988
0.886
NR3C2
M03382_2.00
Homo sapiens
NRGDACAHDRTGTHCYN
NRGDACAYHDTGTHCYN
SELEX
Jolma et al.(2013)
NR3C2_1
0.992
0.943
NR3C1
M09270_2.00
Homo sapiens
DGNACABKNTGTNCY
RGNACANMVTGTNCH
Misc
Kulakovskiy et al.(2013)
GCR_HUMAN.H11MO.0.A
0.988
0.886
NR3C2
M05637_2.00
Homo sapiens
NGNACRNNNYGTNCN
NGNACRNNNYGTNCN
SELEX
Yin et al.(2017)
NR3C2_eDBD_HT-SELEX
0.992
0.943
NR3C1
M09607_2.00
Homo sapiens
NRGNACABNVTGTNCY
RGNACABNVTGTNCYN
Misc
Heinz et al.(2010)
A549-GR_GSE32465
0.988
0.886
NR3C2
M05638_2.00
Homo sapiens
NGNACRNNVYGTNCN
NGNACRBNNYGTNCN
SELEX
Yin et al.(2017)
NR3C2_eDBD_Methyl-HT-SELEX
0.992
0.943
NR3C1
M11119_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GR_01
0.988
0.886
PGR
M03923_2.00
Homo sapiens
DGNACANNNYGTNCY
RGNACRNNNTGTNCH
SELEX
Nitta et al.(2015)
PGR_1
0.990
0.886
NR3C1
M11120_2.00
Homo sapiens
KKYACMRDVTGTYCTK
MAGRACABHYKGTRMM
Transfac
Matys et al.(2006)
V$GRE_C
0.988
0.886
PGR
M09266_2.00
Homo sapiens
RGNACWBYBTGTNCYN
NRGNACAVRVWGTNCY
Misc
Kulakovskiy et al.(2013)
PRGR_HUMAN.H11MO.0.A
0.990
0.886
NR3C1
M11121_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GR_Q4
0.988
0.886
Pgr
M09326_2.00
Mus musculus
RGNACWBYNTGTNCY
RGNACANRVWGTNCY
Misc
Kulakovskiy et al.(2013)
PRGR_MOUSE.H11MO.0.A
0.990
0.886
NR3C1
M11122_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GR_Q6_01
0.988
0.886
NR3C1
M11123_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GR_Q6_02
0.988
0.886
PGR
M09603_2.00
Homo sapiens
RNACWNNNWGTNCHN
NDGNACWNNNWGTNY
Misc
Heinz et al.(2010)
T47D-PR_GSE31130
0.990
0.886
NR3C1
M11124_2.00
Homo sapiens
NNWGVACANWDNNDNBHNN
NNDVNHNNHWNTGTBCWNN
Transfac
Matys et al.(2006)
V$GR_Q6
0.988
0.886
PGR
M11095_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PR_01
0.990
0.886
PGR
M11096_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PR_02
0.990
0.886
NR3C1
M11125_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$NR3C1_04
0.988
0.886
PGR
M11097_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PR_Q6
0.990
0.886
NR3C1
M05588_2.00
Homo sapiens
RGDACANDRYGTHCY
RGDACRYHNTGTHCY
SELEX
Yin et al.(2017)
NR3C1_eDBD_Methyl-HT-SELEX
0.988
0.886
Ar
M00821_2.00
Mus musculus
NRRGAACAYN
NRTGTTCYYN
PBM
Weirauch et al.(2013)
pTH1739
0.976
0.771
AR
M03389_2.00
Homo sapiens
DRGWACRHVDYGTWCCY
RGGWACRHBDYGTWCYH
SELEX
Jolma et al.(2013)
AR_1
0.976
0.771
AR
M03390_2.00
Homo sapiens
DRGWACAYNRTGTWCYY
RRGWACAYNRTGTWCYH
SELEX
Jolma et al.(2013)
AR_2
0.976
0.771
Ar
M03436_2.00
Mus musculus
NRGHACAYNVYGTWCYN
NRGWACRBNRTGTDCYN
SELEX
Jolma et al.(2013)
Ar_1
0.976
0.771
AR
M09288_2.00
Homo sapiens
DRYAAAYADNNNRGNACA
TGTNCYNNNHTRTTTRYH
Misc
Kulakovskiy et al.(2013)
ANDR_HUMAN.H11MO.0.A
0.977
0.771
Ar
M09331_2.00
Mus musculus
NRGNACABRVTGTNCY
RGNACABYVTGTNCYN
Misc
Kulakovskiy et al.(2013)
ANDR_MOUSE.H11MO.0.A
0.977
0.771
AR
M09610_2.00
Homo sapiens
NRGNACABNVTGTNCY
RGNACABNVTGTNCYN
Misc
Heinz et al.(2010)
LNCAP-AR_GSE27824
0.976
0.771
AR
M09609_2.00
Homo sapiens
SHDRGVACAS
STGTBCYHDS
Misc
Heinz et al.(2010)
LNCaP-AR_GSE27824
0.976
0.771
AR
M11157_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$AR_01
0.976
0.771
AR
M11158_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$AR_02
0.976
0.771
AR
M11159_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$AR_03
0.976
0.771
AR
M11160_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$AR_04
0.976
0.771
AR
M11161_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$AR_11
0.977
0.771
AR
M11162_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$AR_13
0.977
0.771
AR
M11163_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$AR_14_H
0.976
0.771
AR
M11164_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$AR_Q2
0.976
0.771
AR
M11165_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$AR_Q6_01
0.976
0.771
AR
M11166_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$AR_Q6
0.976
0.771
For this family, TFs with SR scores >
0.745
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSTRUP00000037994
Nuclear receptor
612
684
KVCLVCGDEASGCHYGVVTCGSCKVFFKRAVEGSKSRHNYLCAGRNDCIIDKIRRKNCPACRVRKCFQAGMNL
ENSTRUP00000037995
Nuclear receptor
615
684
KVCLVCGDEASGCHYGVVTCGSCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRVRKCFQAGMNL
ENSTRUP00000037996
Nuclear receptor
615
684
KVCLVCGDEASGCHYGVVTCGSCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRVRKCFQAGMNL
ENSTRUP00000037997
Nuclear receptor
610
679
KVCLVCGDEASGCHYGVVTCGSCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRVRKCFQAGMNL
ENSTRUP00000037998
Nuclear receptor
609
678
KVCLVCGDEASGCHYGVVTCGSCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRVRKCFQAGMNL
ENSTRUP00000037999
Nuclear receptor
615
684
KVCLVCGDEASGCHYGVVTCGSCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRVRKCFQAGMNL
ENSTRUP00000038000
Nuclear receptor
230
303
KVCLVCGDEASGCHYGVVTCGSCKVFFKRAVEASYKRKHNYLCAGRNDCIIDKIRRKNCPACRVRKCFQAGMNL
ENSTRUP00000038001
Nuclear receptor
23
72
KVCLVCGDEASGCHYGVVTCGSCKVFFKRAVEGTAWARATERDTCLSVGQ
ENSTRUP00000038001
Nuclear receptor
68
108
LSVGQHNYLCAGRNDCIIDKIRRKNCPACRVRKCFQAGMNL
Links
Other
Nuclear receptor
family TFs
Other
Takifugu rubripes
TFs
272 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy