GB50458 (Apis mellifera)
Nuclear receptor

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00105 (zf-C4) IPR001628 GB50458 T305541_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
NR2E1
M02394_2.00
Homo sapiens
NGAGGTCARN

NYTGACCTCN
PBM
Weirauch et al.(2014)
pTH6281
0.965 0.771
Nr2e1
M00814_2.00
Mus musculus
NNNGTYRNNN

NNNYRACNNN
PBM
Weirauch et al.(2013)
pTH2936
0.965 0.771
A1YGC6_PANPA
M02421_2.00
Pan paniscus
NNGTCANNN

NNNTGACNN
PBM
Weirauch et al.(2014)
pTH5561
0.965 0.771
NR2E1
M03364_2.00
Homo sapiens
WDAAGTCAA

TTGACTTHW
SELEX
Jolma et al.(2013)
NR2E1_1
0.965 0.771
NR2E1
M03365_2.00
Homo sapiens
RARTCAWDAAGTCA

TGACTTHWTGAYTY
SELEX
Jolma et al.(2013)
NR2E1_2
0.965 0.771
Nr2e1
M03427_2.00
Mus musculus
WDAAGTCAW

WTGACTTHW
SELEX
Jolma et al.(2013)
Nr2e1_1
0.965 0.771
Nr2e1
M03428_2.00
Mus musculus
RRGTCAWDAAGTCA

TGACTTHWTGACYY
SELEX
Jolma et al.(2013)
Nr2e1_2
0.965 0.771
NR2E1
M05585_2.00
Homo sapiens
NNAAGTCAN

NTGACTTNN
SELEX
Yin et al.(2017)
NR2E1_FL_HT-SELEX
0.965 0.771
NR2E1
M05586_2.00
Homo sapiens
NDAAGTCAN

NTGACTTHN
SELEX
Yin et al.(2017)
NR2E1_FL_Methyl-HT-SELEX
0.965 0.771
dsf
M06431_2.00
Drosophila melanogaster
AAAAGTCANH

DNTGACTTTT
B1H
Zhu et al.(2011)
dsf_SANGER_5_FBgn0015381
0.964 0.829
tll
M02408_2.00
Drosophila melanogaster
NRASGTCAANNN

NNNTTGACSTYN
PBM
Weirauch et al.(2014)
pTH5714
0.852 0.714
tll
M03932_2.00
Drosophila melanogaster
NRAGTCAAAAGTCA

TGACTTTTGACTYN
SELEX
Nitta et al.(2015)
tll_1
0.852 0.714
tll
M03933_2.00
Drosophila melanogaster
NRAGTCAADAAGTCA

TGACTTHTTGACTYN
SELEX
Nitta et al.(2015)
tll_2
0.852 0.714
tll
M06558_2.00
Drosophila melanogaster
WAAAGTCAAM

KTTGACTTTW
B1H
Mathelier et al.(2014)
MA0459.1
0.852 0.714
tll
M06424_2.00
Drosophila melanogaster
AAAGTYA

TRACTTT
B1H
Zhu et al.(2011)
tll_FlyReg_FBgn0003720
0.852 0.714
tll
M06425_2.00
Drosophila melanogaster
WAAAGTCAAM

KTTGACTTTW
B1H
Zhu et al.(2011)
tll_NAR_FBgn0003720
0.852 0.714
tll
M09688_2.00
Drosophila melanogaster
MAAAGTCAAH

DTTGACTTTK
Misc
Kulakovskiy et al.(2009)
tll
0.852 0.714
tll
M11190_2.00
Drosophila melanogaster Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
I$TLL_Q6
0.852 0.714
For this family, TFs with SR scores > 0.745 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
GB50458-PA Nuclear receptor 53 126

Links

Other Nuclear receptor family TFs
Other Apis mellifera TFs

321 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
LBD6 Arabidopsis thaliana AT1G65620 D 0.000
Cla020438 Citrullus lanatus Cla020438 I 0.000
Bostr.26959s0351 Boechera stricta Bostr.26959s0351 I 0.000
Cagra.10809s0001 Capsella grandiflora Cagra.10809s0001 I 0.000
Cagra.20099s0001 Capsella grandiflora Cagra.20099s0001 I 0.000
Cagra.2475s0001 Capsella grandiflora Cagra.2475s0001 I 0.000
Carubv10020974m.g Capsella rubella Carubv10020974m.g I 0.000
Carubv10025704m.g Capsella rubella Carubv10025704m.g I 0.000
Carubv10026811m.g Capsella rubella Carubv10026811m.g I 0.000
Ciclev10017910m.g Citrus clementina Ciclev10017910m.g I 0.000
Ciclev10027275m.g Citrus clementina Ciclev10027275m.g I 0.000
Eucgr.C02148 Eucalyptus grandis Eucgr.C02148 I 0.000
Eucgr.K02809 Eucalyptus grandis Eucgr.K02809 I 0.000
evm.TU.supercontig_331.6 Carica papaya evm.TU.supercontig_331.6 I 0.000
evm.TU.supercontig_39.110 Carica papaya evm.TU.supercontig_39.110 I 0.000
evm.TU.supercontig_6.423 Carica papaya evm.TU.supercontig_6.423 I 0.000
Bostr.0568s0111 Boechera stricta Bostr.0568s0111 I 0.000
Aquca_058_00006 Aquilegia coerulea Aquca_058_00006 I 0.000
Aquca_007_00083 Aquilegia coerulea Aquca_007_00083 I 0.000
Pm010483 Prunus mume Pm010483 I 0.000
Pm026450 Prunus mume Pm026450 I 0.000
29676.m001633 Ricinus communis 29676.m001633 I 0.000
29929.m004500 Ricinus communis 29929.m004500 I 0.000
cassava1141.valid.m1 Manihot esculenta cassava1141.valid.m1 I 0.000
cassava16840.m1 Manihot esculenta cassava16840.m1 I 0.000
cassava16846.m1 Manihot esculenta cassava16846.m1 I 0.000
cassava32690.m1 Manihot esculenta cassava32690.m1 I 0.000
cassava32691.m1 Manihot esculenta cassava32691.m1 I 0.000
Cucsa.178830 Cucumis sativus Cucsa.178830 I 0.000
Cucsa.250570 Cucumis sativus Cucsa.250570 I 0.000
gw1.7.209.1 Physcomitrella patens gw1.7.209.1 I 0.000
mgf004296m Mimulus guttatus mgf004296m I 0.000
mgf014755m Mimulus guttatus mgf014755m I 0.000
gene21541-v1.0-hybrid Fragaria vesca gene21541-v1.0-hybrid I 0.000
gene24088-v1.0-hybrid Fragaria vesca gene24088-v1.0-hybrid I 0.000
gene30401-v1.0-hybrid Fragaria vesca gene30401-v1.0-hybrid I 0.000
Pavir.Ea03589 Panicum virgatum Pavir.Ea03589 I 0.000
Pavir.Ib03943 Panicum virgatum Pavir.Ib03943 I 0.000
Pavir.J22284 Panicum virgatum Pavir.J22284 I 0.000
SapurV1A.0093s0490 Salix purpurea SapurV1A.0093s0490 I 0.000
SapurV1A.0164s0090 Salix purpurea SapurV1A.0164s0090 I 0.000
SapurV1A.0428s0090 Salix purpurea SapurV1A.0428s0090 I 0.000
SapurV1A.0641s0140 Salix purpurea SapurV1A.0641s0140 I 0.000
SapurV1A.0811s0020 Salix purpurea SapurV1A.0811s0020 I 0.000
Thhalv10000525m.g Eutrema salsugineum Thhalv10000525m.g I 0.000
Thhalv10004535m.g Eutrema salsugineum Thhalv10004535m.g I 0.000
Thhalv10019572m.g Eutrema salsugineum Thhalv10019572m.g I 0.000
PK13228.1 Cannabis sativa PK13228.1 I 0.000
PK18922.1 Cannabis sativa PK18922.1 I 0.000
PK21617.1 Cannabis sativa PK21617.1 I 0.000
orange1.1g039589m.g Citrus sinensis orange1.1g039589m.g I 0.000
orange1.1g027472m.g Citrus sinensis orange1.1g027472m.g I 0.000
MDP0000777060 Malus domestica MDP0000777060 I 0.000
Gorai.007G210500 Gossypium raimondii Gorai.007G210500 I 0.000
Gorai.007G350300 Gossypium raimondii Gorai.007G350300 I 0.000
Gorai.008G073400 Gossypium raimondii Gorai.008G073400 I 0.000
Gorai.011G104600 Gossypium raimondii Gorai.011G104600 I 0.000
Lus10005313.g Linum usitatissimum Lus10005313.g I 0.000
Lus10013610.g Linum usitatissimum Lus10013610.g I 0.000
Lus10016769.g Linum usitatissimum Lus10016769.g I 0.000
Lus10022463.g Linum usitatissimum Lus10022463.g I 0.000
MDP0000167580 Malus domestica MDP0000167580 I 0.000
MDP0000197526 Malus domestica MDP0000197526 I 0.000
MDP0000273432 Malus domestica MDP0000273432 I 0.000
MDP0000310871 Malus domestica MDP0000310871 I 0.000
MDP0000562305 Malus domestica MDP0000562305 I 0.000
MDP0000643326 Malus domestica MDP0000643326 I 0.000
chr2.LjT16G06.10.nd Lotus japonicus chr2.LjT16G06.10.nd I 0.000
Cla005851 Citrullus lanatus Cla005851 I 0.000
AMTR_s00066p00120340 Amborella trichopoda AMTR_s00066p00120340 I 0.000
GLYMA13G26020 Glycine max GLYMA13G26020 I 0.000
GLYMA15G36310 Glycine max GLYMA15G36310 I 0.000
GRMZM2G118250 Zea mays GRMZM2G118250 I 0.000
GSMUA_Achr6G04670_001 Musa acuminata GSMUA_Achr6G04670_001 I 0.000
GSMUA_Achr7G23710_001 Musa acuminata GSMUA_Achr7G23710_001 I 0.000
LPERR03G21590 Leersia perrieri LPERR03G21590 I 0.000
MTR_3g073690 Medicago truncatula MTR_3g073690 I 0.000
MTR_5g017950 Medicago truncatula MTR_5g017950 I 0.000
MTR_8g040900 Medicago truncatula MTR_8g040900 I 0.000
OB03G34080 Oryza brachyantha OB03G34080 I 0.000
OGLUM03G26820 Oryza glumaepatula OGLUM03G26820 I 0.000
ONIVA11G15310 Oryza nivara ONIVA11G15310 I 0.000
ORGLA03G0240600 Oryza glaberrima ORGLA03G0240600 I 0.000
ORUFI03G26840 Oryza rufipogon ORUFI03G26840 I 0.000
OS03G0612400 Oryza sativa OS03G0612400 I 0.000
GLYMA11G06210 Glycine max GLYMA11G06210 I 0.000
GLYMA06G11181 Glycine max GLYMA06G11181 I 0.000
LBD10 Arabidopsis thaliana AT2G23660 I 0.000
LBD36 Arabidopsis thaliana AT5G66870 I 0.000
BGIOSGA002306 Oryza indica BGIOSGA002306 I 0.000
BGIOSGA013119 Oryza indica BGIOSGA013119 I 0.000
Bo2g051420 Brassica oleracea Bo2g051420 I 0.000
Bo2g167820 Brassica oleracea Bo2g167820 I 0.000
Bo7g064360 Brassica oleracea Bo7g064360 I 0.000
Bra012112 Brassica rapa Bra012112 I 0.000
Bra032153 Brassica rapa Bra032153 I 0.000
Bra039733 Brassica rapa Bra039733 I 0.000
F775_33210 Aegilops tauschii F775_33210 I 0.000
AS2 Arabidopsis lyrata fgenesh2_kg.2__796__AT1G65620.2 I 0.000
ASL1 Arabidopsis lyrata fgenesh2_kg.8__2729__AT5G66870.1 I 0.000
GLYMA01G39060 Glycine max GLYMA01G39060 I 0.000
GLYMA04G11991 Glycine max GLYMA04G11991 I 0.000
PGSC0003DMG400000974 Solanum tuberosum PGSC0003DMG400000974 I 0.000
PGSC0003DMG400010023 Solanum tuberosum PGSC0003DMG400010023 I 0.000
TCM_000560 Theobroma cacao TCM_000560 I 0.000
TCM_024217 Theobroma cacao TCM_024217 I 0.000
Traes_1DL_1290B6A52 Triticum aestivum Traes_1DL_1290B6A52 I 0.000
TRIUR3_06488 Triticum urartu TRIUR3_06488 I 0.000
VIT_00s0215g00010 Vitis vinifera VIT_00s0215g00010 I 0.000
AS2 Vitis vinifera VIT_00s0340g00090 I 0.000
VIT_00s1247g00010 Vitis vinifera VIT_00s1247g00010 I 0.000
VIT_07s0197g00020 Vitis vinifera VIT_07s0197g00020 I 0.000
VIT_07s0197g00030 Vitis vinifera VIT_07s0197g00030 I 0.000
VIT_07s0197g00040 Vitis vinifera VIT_07s0197g00040 I 0.000
VIT_16s0022g02050 Vitis vinifera VIT_16s0022g02050 I 0.000
Ca_02124 Cicer arietinum Ca_02124 I 0.000
Ca_02125 Cicer arietinum Ca_02125 I 0.000
Ca_11161 Cicer arietinum Ca_11161 I 0.000
Ca_20200 Cicer arietinum Ca_20200 I 0.000
Solyc11g008830.1 Solanum lycopersicum Solyc11g008830.1 I 0.000
Solyc03g063140.2 Solanum lycopersicum Solyc03g063140.2 I 0.000
PGSC0003DMG401000764 Solanum tuberosum PGSC0003DMG401000764 I 0.000
PGSC0003DMG402000764 Solanum tuberosum PGSC0003DMG402000764 I 0.000
POPTR_0005s14150 Populus trichocarpa POPTR_0005s14150 I 0.000
POPTR_0007s11460 Populus trichocarpa POPTR_0007s11460 I 0.000
POPTR_0008s07930 Populus trichocarpa POPTR_0008s07930 I 0.000
POPTR_0010s18460 Populus trichocarpa POPTR_0010s18460 I 0.000
PRUPE_ppa015145mg Prunus persica PRUPE_ppa015145mg I 0.000
PRUPE_ppa026393mg Prunus persica PRUPE_ppa026393mg I 0.000
PRUPE_ppa027059mg Prunus persica PRUPE_ppa027059mg I 0.000
Sb03g042310 Sorghum bicolor Sb03g042310 I 0.000
LBD10 Arabidopsis lyrata scaffold_400352.1 I 0.000
Si002599m.g Setaria italica Si002599m.g I 0.000
Solyc02g065150.1 Solanum lycopersicum Solyc02g065150.1 I 0.000
Solyc02g090410.2 Solanum lycopersicum Solyc02g090410.2 I 0.000
Cla003499 Citrullus lanatus Cla003499 I 0.000
Bostr.27895s0126 Boechera stricta Bostr.27895s0126 N 0.000