CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Ppa-nhr-8
(
Pristionchus pacificus
)
Nuclear receptor
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00105 (zf-C4)
IPR001628
PPA17111
T305897_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Hr96
M03940_2.00
Drosophila melanogaster
YVRGTRCANVTGYACYBR
YVRGTRCABNTGYACYBR
SELEX
Nitta et al.(2015)
Hr96_1
0.863
0.571
For this family, TFs with SR scores >
0.745
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
PPA17111
Nuclear receptor
12
86
RICTICGAKALGYNFGVISCESCKAFFRRNAFKDEIKASQGVQCPFANSCTINEKSRRFCQACRLAKCYKAGMKR
Links
Other
Nuclear receptor
family TFs
Other
Pristionchus pacificus
TFs
95 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
scaffold889-EXSNAP2012.10
Pristionchus exspectatus
scaffold889-EXSNAP2012.10
I
0.985
DAPPUDRAFT_303110
Daphnia pulex
DAPPUDRAFT_303110
I
0.908
tetur34g00750
Tetranychus urticae
tetur34g00750
I
0.898
PPAI005921
Phlebotomus papatasi
PPAI005921
I
0.876
RSKR_0000789200
Rhabditophanes kr3021
RSKR_0000789200
I
0.874
HMEL016865
Heliconius melpomene
HMEL016865
I
0.873
KGM_05575
Danaus plexippus
KGM_05575
I
0.873
BGIBMGA010782
Bombyx mori
BGIBMGA010782
I
0.873
PHUM460970
Pediculus humanus
PHUM460970
I
0.872
AFAF019254
Anopheles farauti
AFAF019254
I
0.869
AALB008395
Anopheles albimanus
AALB008395
I
0.867
GK14276
Drosophila willistoni
FBgn0216282
I
0.867
tetur17g03630
Tetranychus urticae
tetur17g03630
I
0.867
ADAC003041
Anopheles darlingi
ADAC003041
I
0.867
AGAP004224
Anopheles gambiae
AGAP004224
I
0.865
AMEC016766
Anopheles melas
AMEC016766
I
0.865
AMEM008752
Anopheles merus
AMEM008752
I
0.865
AMIN004130
Anopheles minimus
AMIN004130
I
0.865
AQUA008824
Anopheles quadriannulatus
AQUA008824
I
0.865
AMAM022585
Anopheles maculatus
AMAM022585
I
0.865
AFUN010189
Anopheles funestus
AFUN010189
I
0.865
ACOM033140
Anopheles coluzzii
ACOM033140
I
0.865
ASTEI03690
Anopheles stephensi
ASTEI03690
I
0.865
ACUA008166
Anopheles culicifacies
ACUA008166
I
0.865
ADIR005534
Anopheles dirus
ADIR005534
I
0.865
AARA011580
Anopheles arabiensis
AARA011580
I
0.865
AATE006049
Anopheles atroparvus
AATE006049
I
0.865
ASIS011648
Anopheles sinensis
ASIS011648
I
0.865
GD21158
Drosophila simulans
FBgn0192609
I
0.863
GE23543
Drosophila yakuba
FBgn0240719
I
0.863
Hr96
Drosophila grimshawi
FBgn0020174
I
0.863
Hr96
Drosophila melanogaster
FBgn0015240
D
0.863
MDOA002084
Musca domestica
MDOA002084
I
0.863
GF16320
Drosophila ananassae
FBgn0093341
I
0.863
GA11197
Drosophila pseudoobscura
FBgn0071252
I
0.863
LCUP002913
Lucilia cuprina
LCUP002913
I
0.863
GG11347
Drosophila erecta
FBgn0103647
I
0.863
GJ24344
Drosophila virilis
FBgn0211424
I
0.863
GM17786
Drosophila sechellia
FBgn0172693
I
0.863
GI22223
Drosophila mojavensis
FBgn0144951
I
0.863
HR96
Aedes aegypti
AAEL007202
I
0.862
CpipJ_CPIJ016038
Culex pipiens
CpipJ_CPIJ016038
I
0.862
CPIJ016038
Culex quinquefasciatus
CPIJ016038
I
0.862
AEPI000232
Anopheles epiroticus
AEPI000232
I
0.862
CBN26095
Caenorhabditis brenneri
CBN26095
I
0.857
L893_g3995
Steinernema glaseri
L893_g3995
I
0.857
LDEC005794
Leptinotarsa decemlineata
LDEC005794
I
0.852
ISCW009328
Ixodes scapularis
ISCW009328
I
0.847
L889_g7248
Steinernema feltiae
L889_g7248
I
0.846
L596_g25556
Steinernema carpocapsae
L596_g25556
I
0.843
YQE_04331
Dendroctonus ponderosae
YQE_04331
I
0.841
MCINX005291
Melitaea cinxia
MCINX005291
I
0.840
Bm3787
Brugia malayi
Bm3787
I
0.838
L892_g14860
Steinernema scapterisci
L892_g14860
I
0.838
WUBG_13334
Wuchereria bancrofti
WUBG_13334
I
0.838
EEL_0000817201
Elaeophora elaphi
EEL_0000817201
I
0.838
GB52904
Apis mellifera
GB52904
I
0.835
NV10187
Nasonia vitripennis
NV10187
I
0.835
CLEC000589
Cimex lectularius
CLEC000589
I
0.835
Hsal_04850--XP_624213.2_APIME
Harpegnathos saltator
Hsal_04850--XP_624213.2_APIME
I
0.835
Cflo_03542--XP_624213.2_APIME
Camponotus floridanus
Cflo_03542--XP_624213.2_APIME
I
0.835
BGLB005044
Biomphalaria glabrata
BGLB005044
I
0.834
ACEP16468
Atta cephalotes
ACEP16468
I
0.832
L898_g23217
Steinernema monticolum
L898_g23217
I
0.832
nAv.1.0.1.g10286
Acanthocheilonema viteae
nAv.1.0.1.g10286
I
0.829
SSTP_0001025500
Strongyloides stercoralis
SSTP_0001025500
N
0.828
TC010645
Tribolium castaneum
TC010645
I
0.827
nDi.2.2.2.g04518
Dirofilaria immitis
nDi.2.2.2.g04518
I
0.825
HHAL000201-PA
Halyomorpha halys
HHAL000201-PA
I
0.825
SMAR007355
Strigamia maritima
SMAR007355
I
0.823
SVE_0817200
Strongyloides venezuelensis
SVE_0817200
N
0.819
L798_15710
Zootermopsis nevadensis
L798_15710
I
0.813
PTRK_0000134600
Parastrongyloides trichosuri
PTRK_0000134600
N
0.808
RPRC001794
Rhodnius prolixus
RPRC001794
I
0.806
CapteG224377
Capitella teleta
CapteG224377
I
0.794
CapteG121837
Capitella teleta
CapteG121837
I
0.794
CGI_10007907
Crassostrea gigas
CGI_10007907
I
0.785
ANCCAN_22289
Ancylostoma caninum
ANCCAN_22289
I
0.782
CGOC_0001446101
Cylicostephanus goldi
CGOC_0001446101
I
0.782
CJA03214
Caenorhabditis japonica
CJA03214
I
0.771
TELCIR_04193
Teladorsagia circumcincta
TELCIR_04193
I
0.769
SMUV_0000312501
Syphacia muris
SMUV_0000312501
I
0.767
TELCIR_04889
Teladorsagia circumcincta
TELCIR_04889
I
0.763
NECAME_01947
Necator americanus
NECAME_01947
I
0.763
SVUK_0001112701
Strongylus vulgaris
SVUK_0001112701
I
0.763
DICVIV_03942
Dictyocaulus viviparus
DICVIV_03942
I
0.763
ACAC_0001358501
Angiostrongylus cantonensis
ACAC_0001358501
I
0.763
HCOI01526000
Haemonchus contortus
HCOI01526000
I
0.763
HPBE_0002060301
Heligmosomoides bakeri
HPBE_0002060301
I
0.760
HelroG99849
Helobdella robusta
HelroG99849
I
0.759
L596_g9326
Steinernema carpocapsae
L596_g9326
I
0.754
L892_g26350
Steinernema scapterisci
L892_g26350
I
0.754
L898_g1817
Steinernema monticolum
L898_g1817
I
0.754
L893_g8292
Steinernema glaseri
L893_g8292
I
0.753
LotgiG59139
Lottia gigantea
LotgiG59139
I
0.747