CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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nhr-28
(
Caenorhabditis elegans
)
Nuclear receptor
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00105 (zf-C4)
IPR001628
WBGene00003624
T306149_2.00
Ensembl (2018-Dec-8)
Link out
NCBI Gene Info:
Predicted to enable DNA-binding transcription factor activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Is expressed in body wall; head; hypodermis; intestine; and pharynx. Human ortholog(s) of this gene implicated in type 2 diabetes mellitus. Orthologous to human PPARD (peroxisome proliferator activated receptor delta). [provided by Alliance of Genome Resources, Apr 2022]
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
nhr-86
M02415_2.00
Caenorhabditis elegans
KTGTAGTC
GACTACAM
PBM
Weirauch et al.(2014)
pTH8598
0.915
0.671
nhr-70
M00695_2.00
Caenorhabditis elegans
NYTGTAGYYD
HRRCTACARN
PBM
Narasimhan et al.(2015)
pTH9174
0.891
0.729
For this family, TFs with SR scores >
0.745
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
C11G6.4a
Nuclear receptor
6
75
SPCSVCGEAGDGAHFGAEACRACAAFFRRSVALNKAYVCRAMGTCVIQKNVRCMCRACRFTKCIAVGMRK
Links
Other
Nuclear receptor
family TFs
Other
Caenorhabditis elegans
TFs
59 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy