nhr-35 (Caenorhabditis elegans)
Nuclear receptor

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00105 (zf-C4) IPR001628 WBGene00003628 T306153_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
nhr-49
M02413_2.00
Caenorhabditis elegans
NNNNWNHAN

NTDNWNNNN
PBM
Weirauch et al.(2014)
pTH5891
0.931 0.571
nhr-1
M00686_2.00
Caenorhabditis elegans
ARTGATCA

TGATCAYT
PBM
Narasimhan et al.(2015)
pTH9322
0.882 0.471
Hnf4
M03935_2.00
Drosophila melanogaster
RGGKCAAAGGTCA

TGACCTTTGMCCY
SELEX
Nitta et al.(2015)
Hnf4_1
0.746 0.571
Hnf4
M03936_2.00
Drosophila melanogaster
RGGKCAAAGTYCA

TGRACTTTGMCCY
SELEX
Nitta et al.(2015)
Hnf4_2
0.746 0.571
Hnf4
M03937_2.00
Drosophila melanogaster
RGTVCAAAGKTCR

YGAMCTTTGBACY
SELEX
Nitta et al.(2015)
Hnf4_3
0.746 0.571
Hnf4
M03938_2.00
Drosophila melanogaster
RTGRACTTTGGACY

RGTCCAAAGTYCAY
SELEX
Nitta et al.(2015)
Hnf4_4
0.746 0.571
Hnf4
M06428_2.00
Drosophila melanogaster
DKNKWSSNGGGGTCA

TGACCCCNSSWMNMH
B1H
Zhu et al.(2011)
Hnf4_SANGER_10_FBgn0004914
0.746 0.571
Hnf4
M06429_2.00
Drosophila melanogaster
GGGGTCAH

DTGACCCC
B1H
Zhu et al.(2011)
Hnf4_SANGER_5_FBgn0004914
0.746 0.571
For this family, TFs with SR scores > 0.745 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
C07A12.3a Nuclear receptor 75 144
C07A12.3b Nuclear receptor 19 88

Links

Other Nuclear receptor family TFs
Other Caenorhabditis elegans TFs

246 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
CBN11572 Caenorhabditis brenneri CBN11572 I 0.995
CRE00809 Caenorhabditis remanei CRE00809 I 0.994
CBG14485 Caenorhabditis briggsae CBG14485 I 0.994
CJA16040 Caenorhabditis japonica CJA16040 I 0.994
HCOI00592600 Haemonchus contortus HCOI00592600 I 0.988
OESDEN_04341 Oesophagostomum dentatum OESDEN_04341 I 0.988
Minc13747 Meloidogyne incognita Minc13747 I 0.982
MhA1_Contig817.frz3.gene1 Meloidogyne hapla MhA1_Contig817.frz3.gene1 I 0.982
Minc17538 Meloidogyne incognita Minc17538 I 0.982
GPLIN_000284100 Globodera pallida GPLIN_000284100 I 0.982
PPA22443 Pristionchus pacificus PPA22443 I 0.974
scaffold107-EXSNAP2012.33 Pristionchus exspectatus scaffold107-EXSNAP2012.33 I 0.974
DME_0000747901 Dracunculus medinensis DME_0000747901 I 0.973
nOo.2.0.1.g03859 Onchocerca ochengi nOo.2.0.1.g03859 I 0.972
WBGene00240560 Onchocerca volvulus WBGene00240560 I 0.972
nDi.2.2.2.g09348 Dirofilaria immitis nDi.2.2.2.g09348 I 0.972
LOAG_08636 Loa loa LOAG_08636 I 0.972
nAv.1.0.1.g09196 Acanthocheilonema viteae nAv.1.0.1.g09196 I 0.970
BXY_1375200 Bursaphelenchus xylophilus BXY_1375200 I 0.970
EEL_0000204901 Elaeophora elaphi EEL_0000204901 I 0.970
ASU_13587 Ascaris suum ASU_13587 I 0.967
nLs.2.1.2.g04051 Litomosoides sigmodontis nLs.2.1.2.g04051 I 0.965
L893_g21283 Steinernema glaseri L893_g21283 I 0.964
L898_g23058 Steinernema monticolum L898_g23058 I 0.964
L889_g11570 Steinernema feltiae L889_g11570 I 0.964
L892_g4134 Steinernema scapterisci L892_g4134 I 0.964
L596_g23123 Steinernema carpocapsae L596_g23123 I 0.964
TCLT_0000612301 Thelazia callipaeda TCLT_0000612301 I 0.964
SSTP_0001170700 Strongyloides stercoralis SSTP_0001170700 I 0.949
BXY_0631600 Bursaphelenchus xylophilus BXY_0631600 I 0.941
MhA1_Contig2491.frz3.gene4 Meloidogyne hapla MhA1_Contig2491.frz3.gene4 I 0.933
TCLT_0000461101 Thelazia callipaeda TCLT_0000461101 I 0.933
GPLIN_001175700 Globodera pallida GPLIN_001175700 I 0.931
ASU_03870 Ascaris suum ASU_03870 I 0.931
CBG03844 Caenorhabditis briggsae CBG03844 I 0.931
nhr-49 Caenorhabditis elegans WBGene00003639 D 0.931
CRE08259 Caenorhabditis remanei CRE08259 I 0.931
CBN20749 Caenorhabditis brenneri CBN20749 I 0.931
PEQ_0000391501 Parascaris equorum PEQ_0000391501 I 0.931
CBN18198 Caenorhabditis brenneri CBN18198 I 0.931
LOAG_08615 Loa loa LOAG_08615 I 0.930
SVE_0697700 Strongyloides venezuelensis SVE_0697700 I 0.930
L893_g13285 Steinernema glaseri L893_g13285 I 0.930
SPAL_0001238400 Strongyloides papillosus SPAL_0001238400 I 0.930
L596_g11035 Steinernema carpocapsae L596_g11035 I 0.930
WBGene00236987 Onchocerca volvulus WBGene00236987 I 0.929
nOo.2.0.1.g02345 Onchocerca ochengi nOo.2.0.1.g02345 I 0.929
nhr-10 Caenorhabditis elegans WBGene00003609 I 0.928
CRE25378 Caenorhabditis remanei CRE25378 I 0.928
CBN20518 Caenorhabditis brenneri CBN20518 I 0.927
CBG16594 Caenorhabditis briggsae CBG16594 I 0.927
DME_0000591901 Dracunculus medinensis DME_0000591901 I 0.925
scaffold605-EXSNAP2012.9 Pristionchus exspectatus scaffold605-EXSNAP2012.9 I 0.924
Bm4980 Brugia malayi Bm4980 I 0.922
HCOI00601000 Haemonchus contortus HCOI00601000 I 0.922
DME_0000693601 Dracunculus medinensis DME_0000693601 I 0.922
HPLM_0000564201 Haemonchus placei HPLM_0000564201 I 0.922
BTMF_0000217201 Brugia timori BTMF_0000217201 I 0.922
SSTP_0000546600 Strongyloides stercoralis SSTP_0000546600 I 0.920
PTRK_0001312000 Parastrongyloides trichosuri PTRK_0001312000 I 0.919
ANCCAN_17081 Ancylostoma caninum ANCCAN_17081 I 0.917
ANCCAN_14103 Ancylostoma caninum ANCCAN_14103 I 0.917
L596_g23777 Steinernema carpocapsae L596_g23777 I 0.916
L893_g25227 Steinernema glaseri L893_g25227 I 0.916
ASU_12501 Ascaris suum ASU_12501 I 0.915
ALUE_0002179401 Ascaris lumbricoides ALUE_0002179401 I 0.915
NECAME_00872 Necator americanus NECAME_00872 I 0.915
SVE_1951500 Strongyloides venezuelensis SVE_1951500 I 0.915
SPAL_0000490500 Strongyloides papillosus SPAL_0000490500 I 0.915
L889_g17247 Steinernema feltiae L889_g17247 I 0.910
BXY_1057600 Bursaphelenchus xylophilus BXY_1057600 I 0.910
L898_g22454 Steinernema monticolum L898_g22454 I 0.910
L898_g26357 Steinernema monticolum L898_g26357 I 0.910
L889_g7780 Steinernema feltiae L889_g7780 I 0.907
L596_g12276 Steinernema carpocapsae L596_g12276 I 0.907
L892_g8671 Steinernema scapterisci L892_g8671 I 0.907
SPAL_0000841700 Strongyloides papillosus SPAL_0000841700 I 0.905
PTRK_0000720500 Parastrongyloides trichosuri PTRK_0000720500 I 0.905
SSTP_0000145700 Strongyloides stercoralis SSTP_0000145700 I 0.905
SVE_1799100 Strongyloides venezuelensis SVE_1799100 I 0.905
PTRK_0000861400 Parastrongyloides trichosuri PTRK_0000861400 I 0.901
EVEC_0000027301 Enterobius vermicularis EVEC_0000027301 I 0.900
SMUV_0000708401 Syphacia muris SMUV_0000708401 I 0.897
L596_g12321 Steinernema carpocapsae L596_g12321 I 0.896
L889_g29879 Steinernema feltiae L889_g29879 I 0.896
L893_g3010 Steinernema glaseri L893_g3010 I 0.896
L898_g2764 Steinernema monticolum L898_g2764 I 0.896
OFLC_0001450101 Onchocerca flexuosa OFLC_0001450101 I 0.894
nOo.2.0.1.g01530 Onchocerca ochengi nOo.2.0.1.g01530 I 0.894
TCLT_0000399401 Thelazia callipaeda TCLT_0000399401 I 0.894
BTMF_0001388101 Brugia timori BTMF_0001388101 I 0.894
nDi.2.2.2.g02318 Dirofilaria immitis nDi.2.2.2.g02318 I 0.894
Bm5319 Brugia malayi Bm5319 I 0.894
LOAG_00300 Loa loa LOAG_00300 I 0.894
ACAC_0001297301 Angiostrongylus cantonensis ACAC_0001297301 I 0.892
WBGene00241993 Onchocerca volvulus WBGene00241993 I 0.885
PTRK_0001020800 Parastrongyloides trichosuri PTRK_0001020800 I 0.885
SPAL_0001099500 Strongyloides papillosus SPAL_0001099500 I 0.883
SSTP_0000769100 Strongyloides stercoralis SSTP_0000769100 I 0.883
SVE_0858700 Strongyloides venezuelensis SVE_0858700 I 0.883
CJA13458 Caenorhabditis japonica CJA13458 I 0.882
HCOI01554200 Haemonchus contortus HCOI01554200 I 0.882
HPBE_0000837301 Heligmosomoides bakeri HPBE_0000837301 I 0.882
CBN19235 Caenorhabditis brenneri CBN19235 I 0.882
CBG01866 Caenorhabditis briggsae CBG01866 I 0.882
ANCCEY_01961 Ancylostoma ceylanicum ANCCEY_01961 I 0.882
CRE03310 Caenorhabditis remanei CRE03310 I 0.882
nhr-1 Caenorhabditis elegans WBGene00003600 D 0.882
DICVIV_09815 Dictyocaulus viviparus DICVIV_09815 I 0.877
ACOC_0000700901 Angiostrongylus costaricensis ACOC_0000700901 I 0.877
CBG23319 Caenorhabditis briggsae CBG23319 I 0.868
EVEC_0001313601 Enterobius vermicularis EVEC_0001313601 I 0.867
HCOI00618700 Haemonchus contortus HCOI00618700 I 0.863
DICVIV_00957 Dictyocaulus viviparus DICVIV_00957 I 0.863
ACAC_0000711701 Angiostrongylus cantonensis ACAC_0000711701 I 0.863
RSKR_0000342500 Rhabditophanes kr3021 RSKR_0000342500 I 0.861
PTRK_0000480700 Parastrongyloides trichosuri PTRK_0000480700 I 0.861
SPAL_0001712900 Strongyloides papillosus SPAL_0001712900 I 0.861
SSTP_0001253400 Strongyloides stercoralis SSTP_0001253400 I 0.861
SVE_0146100 Strongyloides venezuelensis SVE_0146100 I 0.861
CJA37776 Caenorhabditis japonica CJA37776 I 0.852
BXY_0599800 Bursaphelenchus xylophilus BXY_0599800 I 0.849
SVE_0429000 Strongyloides venezuelensis SVE_0429000 I 0.849
PTRK_0000994100 Parastrongyloides trichosuri PTRK_0000994100 I 0.849
SSTP_0000055100 Strongyloides stercoralis SSTP_0000055100 I 0.849
SPAL_0001637600 Strongyloides papillosus SPAL_0001637600 I 0.849
GPLIN_000337500 Globodera pallida GPLIN_000337500 I 0.847
SBAD_0000391501 Soboliphyme baturini SBAD_0000391501 I 0.841
augustus_masked-nMf.1.1.scaf06210-processed-gene-0.0 Meloidogyne floridensis augustus_masked-nMf.1.1.scaf06210-processed-gene-0.0 I 0.830
CBG23318 Caenorhabditis briggsae CBG23318 I 0.822
nhr-68 Caenorhabditis elegans WBGene00003658 I 0.822
CRE26982 Caenorhabditis remanei CRE26982 I 0.820
CBN30215 Caenorhabditis brenneri CBN30215 I 0.816
nRc.2.0.1.g00257 Romanomermis culicivorax nRc.2.0.1.g00257 I 0.815
nRc.2.0.1.g16639 Romanomermis culicivorax nRc.2.0.1.g16639 I 0.814
WUBG_17449 Wuchereria bancrofti WUBG_17449 N 0.813
augustus_masked-nMf.1.1.scaf24822-processed-gene-0.0 Meloidogyne floridensis augustus_masked-nMf.1.1.scaf24822-processed-gene-0.0 I 0.812
D917_06779 Trichinella nativa D917_06779 I 0.811
EFV54558 Trichinella spiralis EFV54558 I 0.811
CRE26981 Caenorhabditis remanei CRE26981 I 0.808
MhA1_Contig70.frz3.gene31 Meloidogyne hapla MhA1_Contig70.frz3.gene31 I 0.805
CGOC_0000474501 Cylicostephanus goldi CGOC_0000474501 N 0.803
L889_g25097 Steinernema feltiae L889_g25097 I 0.800
L892_g186 Steinernema scapterisci L892_g186 I 0.800
L596_g9277 Steinernema carpocapsae L596_g9277 I 0.800
L898_g18440 Steinernema monticolum L898_g18440 I 0.800
HPLM_0000308401 Haemonchus placei HPLM_0000308401 I 0.799
TMUE_s0002006800 Trichuris muris TMUE_s0002006800 I 0.797
Ppa-nhr-14 Pristionchus pacificus PPA06980 I 0.795
scaffold1338-EXSNAP2012.3 Pristionchus exspectatus scaffold1338-EXSNAP2012.3 I 0.795
RSKR_0001067400 Rhabditophanes kr3021 RSKR_0001067400 I 0.791
nDi.2.2.2.g03974 Dirofilaria immitis nDi.2.2.2.g03974 I 0.784
nhr-14 Caenorhabditis elegans WBGene00003613 I 0.784
WBGene00239376 Onchocerca volvulus WBGene00239376 I 0.784
CBN15481 Caenorhabditis brenneri CBN15481 I 0.784
nhr-101 Caenorhabditis elegans WBGene00003691 I 0.784
NBR_0001473401 Nippostrongylus brasiliensis NBR_0001473401 I 0.784
OFLC_0000076301 Onchocerca flexuosa OFLC_0000076301 I 0.784
CRE21925 Caenorhabditis remanei CRE21925 I 0.784
CRE30787 Caenorhabditis remanei CRE30787 I 0.784
SMUV_0000835401 Syphacia muris SMUV_0000835401 I 0.784
CJA14035 Caenorhabditis japonica CJA14035 I 0.784
CBN28528 Caenorhabditis brenneri CBN28528 I 0.784
nOo.2.0.1.g02628 Onchocerca ochengi nOo.2.0.1.g02628 I 0.784
LOAG_07549 Loa loa LOAG_07549 I 0.784
CBN08474 Caenorhabditis brenneri CBN08474 I 0.784
nLs.2.1.2.g04526 Litomosoides sigmodontis nLs.2.1.2.g04526 I 0.784
nAv.1.0.1.g08447 Acanthocheilonema viteae nAv.1.0.1.g08447 I 0.784
TCNE_0000582701 Toxocara canis TCNE_0000582701 I 0.784
Bm5457 Brugia malayi Bm5457 I 0.784
BTMF_0001565301 Brugia timori BTMF_0001565301 I 0.784
ASIM_0001548701 Anisakis simplex ASIM_0001548701 I 0.784
TCLT_0000342401 Thelazia callipaeda TCLT_0000342401 I 0.784
ANCCAN_08267 Ancylostoma caninum ANCCAN_08267 I 0.784
EEL_0000265301 Elaeophora elaphi EEL_0000265301 I 0.784
CBG22776 Caenorhabditis briggsae CBG22776 I 0.784
Minc02318 Meloidogyne incognita Minc02318 I 0.779
Minc05752 Meloidogyne incognita Minc05752 I 0.779
ASIM_0001423201 Anisakis simplex ASIM_0001423201 I 0.777
RSKR_0000600000 Rhabditophanes kr3021 RSKR_0000600000 N 0.777
EVEC_0001195701 Enterobius vermicularis EVEC_0001195701 I 0.777
CBN18824 Caenorhabditis brenneri CBN18824 I 0.775
CBN19472 Caenorhabditis brenneri CBN19472 I 0.775
SMUV_0000369301 Syphacia muris SMUV_0000369301 I 0.773
NECAME_11999 Necator americanus NECAME_11999 I 0.773
L889_g17254 Steinernema feltiae L889_g17254 I 0.770
L898_g7537 Steinernema monticolum L898_g7537 I 0.769
CRE30089 Caenorhabditis remanei CRE30089 I 0.769
HCOI00891400 Haemonchus contortus HCOI00891400 I 0.767
SSTP_0000408200 Strongyloides stercoralis SSTP_0000408200 I 0.767
SVE_1749000 Strongyloides venezuelensis SVE_1749000 I 0.767
SSTP_0001140400 Strongyloides stercoralis SSTP_0001140400 I 0.766
nhr-47 Caenorhabditis elegans WBGene00003637 I 0.765
SPAL_0000231300 Strongyloides papillosus SPAL_0000231300 I 0.765
L596_g11029 Steinernema carpocapsae L596_g11029 I 0.764
L892_g1520 Steinernema scapterisci L892_g1520 I 0.764
PTRK_0000862000 Parastrongyloides trichosuri PTRK_0000862000 I 0.763
ASIM_0001848201 Anisakis simplex ASIM_0001848201 N 0.762
BTMF_0000941401 Brugia timori BTMF_0000941401 I 0.761
LOAG_16377 Loa loa LOAG_16377 I 0.761
CBG04204 Caenorhabditis briggsae CBG04204 I 0.760
nhr-64 Caenorhabditis elegans WBGene00003654 I 0.759
SMAR014405 Strigamia maritima SMAR014405 I 0.759
SINV18643 Solenopsis invicta SINV18643 I 0.758
EEL_0000989101 Elaeophora elaphi EEL_0000989101 I 0.758
ACEP17779 Atta cephalotes ACEP17779 I 0.758
CABZ01057488.2 Danio rerio ENSDARG00000104742 I 0.756
CJA01292 Caenorhabditis japonica CJA01292 I 0.756
GB45602 Apis mellifera GB45602 I 0.756
ENSONIG00000005911 Oreochromis niloticus ENSONIG00000005911 I 0.756
HelroG67417 Helobdella robusta HelroG67417 I 0.755
WBGene00240403 Onchocerca volvulus WBGene00240403 I 0.755
PTRK_0000194200 Parastrongyloides trichosuri PTRK_0000194200 I 0.755
OESDEN_00859 Oesophagostomum dentatum OESDEN_00859 I 0.753
CGOC_0000279901 Cylicostephanus goldi CGOC_0000279901 I 0.753
ANCCAN_20599 Ancylostoma caninum ANCCAN_20599 I 0.753
scaffold598-EXSNAP2012.5 Pristionchus exspectatus scaffold598-EXSNAP2012.5 I 0.753
BGLB013485 Biomphalaria glabrata BGLB013485 I 0.751
Ocbimv22001693m.g Octopus bimaculoides Ocbimv22001693m.g I 0.751
PPA06637 Pristionchus pacificus PPA06637 I 0.751
CapteG172322 Capitella teleta CapteG172322 I 0.751
HPBE_0001033901 Heligmosomoides bakeri HPBE_0001033901 I 0.750
ENSLOCG00000004238 Lepisosteus oculatus ENSLOCG00000004238 I 0.750
ASU_00859 Ascaris suum ASU_00859 I 0.749
ALUE_0000387101 Ascaris lumbricoides ALUE_0000387101 I 0.749
ENSETEG00000011451 Echinops telfairi ENSETEG00000011451 I 0.748
PHUM477600 Pediculus humanus PHUM477600 I 0.746
GE10817 Drosophila yakuba FBgn0228657 I 0.746
MDOA009609 Musca domestica MDOA009609 I 0.746
LCUP010047 Lucilia cuprina LCUP010047 I 0.746
Hsal_12926--NP_001011634.1_APIME Harpegnathos saltator Hsal_12926--NP_001011634.1_APIME I 0.746
GJ17882 Drosophila virilis FBgn0205050 I 0.746
GA21689 Drosophila pseudoobscura FBgn0081674 I 0.746
GF14359 Drosophila ananassae FBgn0091386 I 0.746
ENSGMOG00000001972 Gadus morhua ENSGMOG00000001972 I 0.746
scaffold251-EXSNAP2012.44 Pristionchus exspectatus scaffold251-EXSNAP2012.44 I 0.746
Hnf4 Drosophila melanogaster FBgn0004914 D 0.746
GG24056 Drosophila erecta FBgn0116195 I 0.746
GH13232 Drosophila grimshawi FBgn0120709 I 0.746
GD22387 Drosophila simulans FBgn0193793 I 0.746
scaffold826-EXSNAP2012.10 Pristionchus exspectatus scaffold826-EXSNAP2012.10 I 0.746
GM12759 Drosophila sechellia FBgn0167695 I 0.746
GL26219 Drosophila persimilis FBgn0163801 I 0.746
GI12430 Drosophila mojavensis FBgn0135187 I 0.746
GK18664 Drosophila willistoni FBgn0220662 I 0.746