nhr-48 (Caenorhabditis elegans)
Nuclear receptor

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00105 (zf-C4) IPR001628 WBGene00003638 T306162_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Hr96
M03940_2.00
Drosophila melanogaster
YVRGTRCANVTGYACYBR

YVRGTRCABNTGYACYBR
SELEX
Nitta et al.(2015)
Hr96_1
0.805 0.614
daf-12
M00685_2.00
Caenorhabditis elegans
NDAGTRCANN

NNTGYACTHN
PBM
Narasimhan et al.(2015)
pTH9108
0.806 0.771
daf-12
M08159_2.00
Caenorhabditis elegans
GWGYGYGYKTGYDKB

VMHRCAMRCRCRCWC
ChIP-seq
Mathelier et al.(2014)
MA0538.1
0.806 0.771
For this family, TFs with SR scores > 0.745 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ZK662.3a Nuclear receptor 98 167
ZK662.3b Nuclear receptor 98 167

Links

Other Nuclear receptor family TFs
Other Caenorhabditis elegans TFs

130 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
CRE19106 Caenorhabditis remanei CRE19106 I 0.992
CBN06351 Caenorhabditis brenneri CBN06351 I 0.992
CBG07759 Caenorhabditis briggsae CBG07759 I 0.992
CJA03214 Caenorhabditis japonica CJA03214 I 0.990
ACAC_0001358501 Angiostrongylus cantonensis ACAC_0001358501 I 0.989
HCOI01526000 Haemonchus contortus HCOI01526000 I 0.989
NECAME_01947 Necator americanus NECAME_01947 I 0.989
TELCIR_04889 Teladorsagia circumcincta TELCIR_04889 I 0.989
SVUK_0001112701 Strongylus vulgaris SVUK_0001112701 I 0.989
DICVIV_03942 Dictyocaulus viviparus DICVIV_03942 I 0.989
Minc18589 Meloidogyne incognita Minc18589 I 0.983
Minc13296 Meloidogyne incognita Minc13296 I 0.983
MhA1_Contig1158.frz3.gene18 Meloidogyne hapla MhA1_Contig1158.frz3.gene18 I 0.983
scaffold1545-EXSNAP2012.2 Pristionchus exspectatus scaffold1545-EXSNAP2012.2 I 0.982
SMUV_0000312501 Syphacia muris SMUV_0000312501 I 0.982
HPLM_0001602501 Haemonchus placei HPLM_0001602501 I 0.982
BXY_1432000 Bursaphelenchus xylophilus BXY_1432000 I 0.982
Ppa-nhr-48 Pristionchus pacificus PPA20177 I 0.982
L596_g9326 Steinernema carpocapsae L596_g9326 I 0.980
L893_g8292 Steinernema glaseri L893_g8292 I 0.980
L892_g26350 Steinernema scapterisci L892_g26350 I 0.980
L898_g1817 Steinernema monticolum L898_g1817 I 0.980
ISCW009328 Ixodes scapularis ISCW009328 I 0.964
ACOC_0000352001 Angiostrongylus costaricensis ACOC_0000352001 N 0.950
CBN26095 Caenorhabditis brenneri CBN26095 I 0.936
PPAI005921 Phlebotomus papatasi PPAI005921 I 0.932
AFAF019254 Anopheles farauti AFAF019254 I 0.926
ADIR005534 Anopheles dirus ADIR005534 I 0.924
AALB008395 Anopheles albimanus AALB008395 I 0.912
ADAC003041 Anopheles darlingi ADAC003041 I 0.912
ASIS011648 Anopheles sinensis ASIS011648 I 0.909
AATE006049 Anopheles atroparvus AATE006049 I 0.909
AFUN010189 Anopheles funestus AFUN010189 I 0.908
AMAM022585 Anopheles maculatus AMAM022585 I 0.908
CpipJ_CPIJ016038 Culex pipiens CpipJ_CPIJ016038 I 0.908
ACOM033140 Anopheles coluzzii ACOM033140 I 0.908
AARA011580 Anopheles arabiensis AARA011580 I 0.908
AMEC016766 Anopheles melas AMEC016766 I 0.908
ACUA008166 Anopheles culicifacies ACUA008166 I 0.908
AMEM008752 Anopheles merus AMEM008752 I 0.908
CPIJ016038 Culex quinquefasciatus CPIJ016038 I 0.908
AGAP004224 Anopheles gambiae AGAP004224 I 0.908
HR96 Aedes aegypti AAEL007202 I 0.908
ASTEI03690 Anopheles stephensi ASTEI03690 I 0.908
AQUA008824 Anopheles quadriannulatus AQUA008824 I 0.908
AMIN004130 Anopheles minimus AMIN004130 I 0.908
AEPI000232 Anopheles epiroticus AEPI000232 I 0.906
GI22223 Drosophila mojavensis FBgn0144951 I 0.905
GG11347 Drosophila erecta FBgn0103647 I 0.905
MDOA002084 Musca domestica MDOA002084 I 0.905
GF16320 Drosophila ananassae FBgn0093341 I 0.905
LCUP002913 Lucilia cuprina LCUP002913 I 0.905
GA11197 Drosophila pseudoobscura FBgn0071252 I 0.905
Hr96 Drosophila grimshawi FBgn0020174 I 0.905
Hr96 Drosophila melanogaster FBgn0015240 D 0.905
GD21158 Drosophila simulans FBgn0192609 I 0.905
GE23543 Drosophila yakuba FBgn0240719 I 0.905
GM17786 Drosophila sechellia FBgn0172693 I 0.905
GJ24344 Drosophila virilis FBgn0211424 I 0.905
HHAL000201-PA Halyomorpha halys HHAL000201-PA I 0.904
PTRK_0001132000 Parastrongyloides trichosuri PTRK_0001132000 I 0.901
L798_15710 Zootermopsis nevadensis L798_15710 I 0.901
GK14276 Drosophila willistoni FBgn0216282 I 0.900
LDEC005794 Leptinotarsa decemlineata LDEC005794 I 0.900
SVE_0958300 Strongyloides venezuelensis SVE_0958300 I 0.899
SPAL_0000150000 Strongyloides papillosus SPAL_0000150000 I 0.899
SSTP_0001272200 Strongyloides stercoralis SSTP_0001272200 I 0.899
MCINX005291 Melitaea cinxia MCINX005291 I 0.898
tetur17g03630 Tetranychus urticae tetur17g03630 I 0.898
PHUM460970 Pediculus humanus PHUM460970 I 0.895
YQE_04331 Dendroctonus ponderosae YQE_04331 I 0.890
DAPPUDRAFT_303110 Daphnia pulex DAPPUDRAFT_303110 I 0.888
TC010645 Tribolium castaneum TC010645 I 0.887
tetur34g00750 Tetranychus urticae tetur34g00750 I 0.883
CLEC000589 Cimex lectularius CLEC000589 I 0.882
RPRC001794 Rhodnius prolixus RPRC001794 I 0.874
EEL_0000817201 Elaeophora elaphi EEL_0000817201 I 0.865
WUBG_13334 Wuchereria bancrofti WUBG_13334 I 0.865
KGM_05575 Danaus plexippus KGM_05575 I 0.865
Bm3787 Brugia malayi Bm3787 I 0.865
BGIBMGA010782 Bombyx mori BGIBMGA010782 I 0.865
HMEL016865 Heliconius melpomene HMEL016865 I 0.865
SMAR007355 Strigamia maritima SMAR007355 I 0.864
nAv.1.0.1.g10286 Acanthocheilonema viteae nAv.1.0.1.g10286 I 0.852
nDi.2.2.2.g04518 Dirofilaria immitis nDi.2.2.2.g04518 I 0.849
NV10187 Nasonia vitripennis NV10187 I 0.844
Hsal_04850--XP_624213.2_APIME Harpegnathos saltator Hsal_04850--XP_624213.2_APIME I 0.844
GB52904 Apis mellifera GB52904 I 0.844
Cflo_03542--XP_624213.2_APIME Camponotus floridanus Cflo_03542--XP_624213.2_APIME I 0.838
CBN31767 Caenorhabditis brenneri CBN31767 I 0.806
CBG04512 Caenorhabditis briggsae CBG04512 I 0.806
CJA11532 Caenorhabditis japonica CJA11532 I 0.806
scaffold61-EXSNAP2012.64 Pristionchus exspectatus scaffold61-EXSNAP2012.64 I 0.806
ANCCAN_15412 Ancylostoma caninum ANCCAN_15412 I 0.806
ACOC_0000064201 Angiostrongylus costaricensis ACOC_0000064201 I 0.806
TELCIR_05516 Teladorsagia circumcincta TELCIR_05516 I 0.806
daf-12 Caenorhabditis elegans WBGene00000908 D 0.806
CRE07237 Caenorhabditis remanei CRE07237 I 0.806
ANCDUO_17434 Ancylostoma duodenale ANCDUO_17434 I 0.806
ACEP16468 Atta cephalotes ACEP16468 I 0.805
PTRK_0000134600 Parastrongyloides trichosuri PTRK_0000134600 N 0.800
SMUV_0001002101 Syphacia muris SMUV_0001002101 I 0.799
PTRK_0001378700 Parastrongyloides trichosuri PTRK_0001378700 I 0.799
SSTP_0001172300 Strongyloides stercoralis SSTP_0001172300 I 0.799
SPAL_0001591300 Strongyloides papillosus SPAL_0001591300 I 0.799
nDi.2.2.2.g09652 Dirofilaria immitis nDi.2.2.2.g09652 I 0.799
DME_0000943901 Dracunculus medinensis DME_0000943901 I 0.799
ASIM_0001146101 Anisakis simplex ASIM_0001146101 I 0.799
ASU_07898 Ascaris suum ASU_07898 I 0.799
WUBG_12640 Wuchereria bancrofti WUBG_12640 I 0.799
LOAG_10538 Loa loa LOAG_10538 I 0.799
WBGene00239037 Onchocerca volvulus WBGene00239037 I 0.799
TCLT_0000386701 Thelazia callipaeda TCLT_0000386701 I 0.799
BXY_1418300 Bursaphelenchus xylophilus BXY_1418300 I 0.799
SVE_0996600 Strongyloides venezuelensis SVE_0996600 I 0.799
L889_g10853 Steinernema feltiae L889_g10853 I 0.799
L596_g8771 Steinernema carpocapsae L596_g8771 I 0.799
EVEC_0001257601 Enterobius vermicularis EVEC_0001257601 I 0.799
L898_g10498 Steinernema monticolum L898_g10498 I 0.799
L596_g25556 Steinernema carpocapsae L596_g25556 I 0.789
L892_g14860 Steinernema scapterisci L892_g14860 I 0.782
L893_g16225 Steinernema glaseri L893_g16225 I 0.774
L892_g18386 Steinernema scapterisci L892_g18386 I 0.771
L893_g3995 Steinernema glaseri L893_g3995 I 0.767
tetur30g01210 Tetranychus urticae tetur30g01210 N 0.765
ASU_08827 Ascaris suum ASU_08827 N 0.758
RSKR_0001015700 Rhabditophanes kr3021 RSKR_0001015700 I 0.754
ANCCEY_01199 Ancylostoma ceylanicum ANCCEY_01199 I 0.749
scaffold889-EXSNAP2012.10 Pristionchus exspectatus scaffold889-EXSNAP2012.10 I 0.748