nhr-54 (Caenorhabditis elegans)
Nuclear receptor

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00105 (zf-C4) IPR001628 WBGene00003644 T306168_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
nhr-142
M00703_2.00
Caenorhabditis elegans
RGTCACAR

YTGTGACY
PBM
Narasimhan et al.(2015)
pTH10714
0.832 0.543
nhr-232
M00700_2.00
Caenorhabditis elegans
NNTNTDWYN

NRWHANANN
PBM
Narasimhan et al.(2015)
pTH10647
0.815 0.500
For this family, TFs with SR scores > 0.745 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
F36D3.2 Nuclear receptor 15 87

Links

Other Nuclear receptor family TFs
Other Caenorhabditis elegans TFs

63 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
CBG20729 Caenorhabditis briggsae CBG20729 I 0.975
nhr-170 Caenorhabditis elegans WBGene00008309 I 0.974
CBN23838 Caenorhabditis brenneri CBN23838 I 0.973
CRE15644 Caenorhabditis remanei CRE15644 I 0.973
CBG20727 Caenorhabditis briggsae CBG20727 I 0.971
CRE15675 Caenorhabditis remanei CRE15675 I 0.968
nhr-231 Caenorhabditis elegans WBGene00012449 I 0.961
CBN13569 Caenorhabditis brenneri CBN13569 I 0.960
HPBE_0001646201 Heligmosomoides bakeri HPBE_0001646201 I 0.927
HPLM_0000974301 Haemonchus placei HPLM_0000974301 I 0.899
HCOI01190000 Haemonchus contortus HCOI01190000 I 0.899
NBR_0001834701 Nippostrongylus brasiliensis NBR_0001834701 I 0.872
ACOC_0000492601 Angiostrongylus costaricensis ACOC_0000492601 I 0.865
nhr-213 Caenorhabditis elegans WBGene00011520 I 0.861
CRE30948 Caenorhabditis remanei CRE30948 I 0.861
HPLM_0000974401 Haemonchus placei HPLM_0000974401 I 0.859
SVUK_0002058501 Strongylus vulgaris SVUK_0002058501 I 0.859
CBG09320 Caenorhabditis briggsae CBG09320 I 0.858
CRE31070 Caenorhabditis remanei CRE31070 I 0.858
ANCCEY_07914 Ancylostoma ceylanicum ANCCEY_07914 I 0.847
CBN28290 Caenorhabditis brenneri CBN28290 I 0.844
CBN21486 Caenorhabditis brenneri CBN21486 I 0.844
CBG09567 Caenorhabditis briggsae CBG09567 I 0.842
CBG22870 Caenorhabditis briggsae CBG22870 I 0.839
CJA09697 Caenorhabditis japonica CJA09697 I 0.835
NBR_0001218401 Nippostrongylus brasiliensis NBR_0001218401 I 0.833
nhr-142 Caenorhabditis elegans WBGene00018430 D 0.832
ANCCEY_13226 Ancylostoma ceylanicum ANCCEY_13226 I 0.821
HCOI00483700 Haemonchus contortus HCOI00483700 I 0.821
HPLM_0000277901 Haemonchus placei HPLM_0000277901 I 0.821
CBG06609 Caenorhabditis briggsae CBG06609 I 0.819
CBG06599 Caenorhabditis briggsae CBG06599 I 0.819
CJA28065 Caenorhabditis japonica CJA28065 I 0.819
nhr-178 Caenorhabditis elegans WBGene00017510 I 0.818
nhr-232 Caenorhabditis elegans WBGene00012494 D 0.815
CRE08691 Caenorhabditis remanei CRE08691 I 0.814
scaffold31-EXSNAP2012.20 Pristionchus exspectatus scaffold31-EXSNAP2012.20 I 0.807
L889_g6694 Steinernema feltiae L889_g6694 I 0.806
L898_g3514 Steinernema monticolum L898_g3514 I 0.806
L892_g2781 Steinernema scapterisci L892_g2781 I 0.804
L596_g14590 Steinernema carpocapsae L596_g14590 I 0.803
CRE08749 Caenorhabditis remanei CRE08749 I 0.797
CRE18699 Caenorhabditis remanei CRE18699 I 0.797
nhr-102 Caenorhabditis elegans WBGene00003692 I 0.797
L898_g3515 Steinernema monticolum L898_g3515 I 0.796
L892_g2782 Steinernema scapterisci L892_g2782 I 0.795
SVUK_0001603001 Strongylus vulgaris SVUK_0001603001 I 0.792
L596_g14588 Steinernema carpocapsae L596_g14588 I 0.786
CRE18430 Caenorhabditis remanei CRE18430 I 0.781
CBG06601 Caenorhabditis briggsae CBG06601 I 0.780
CBG06611 Caenorhabditis briggsae CBG06611 I 0.780
Minc14668 Meloidogyne incognita Minc14668 I 0.775
L893_g18992 Steinernema glaseri L893_g18992 I 0.773
L892_g2780 Steinernema scapterisci L892_g2780 I 0.772
L898_g12798 Steinernema monticolum L898_g12798 I 0.772
L898_g3512 Steinernema monticolum L898_g3512 I 0.770
augustus_masked-nMf.1.1.scaf21762-processed-gene-0.0 Meloidogyne floridensis augustus_masked-nMf.1.1.scaf21762-processed-gene-0.0 I 0.770
MhA1_Contig1192.frz3.gene3 Meloidogyne hapla MhA1_Contig1192.frz3.gene3 I 0.766
L596_g14589 Steinernema carpocapsae L596_g14589 I 0.764
L889_g6695 Steinernema feltiae L889_g6695 I 0.763
L889_g6692 Steinernema feltiae L889_g6692 I 0.762
L596_g14596 Steinernema carpocapsae L596_g14596 I 0.758
NBR_0001834801 Nippostrongylus brasiliensis NBR_0001834801 I 0.753