nhr-55 (Caenorhabditis elegans)
Nuclear receptor

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00105 (zf-C4) IPR001628 WBGene00003645 T306169_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
nhr-177
M02419_2.00 		Caenorhabditis elegans
TCGRGANY
RNTCYCGA		 PBM
Weirauch et al.(2014)
pTH9044 		0.869 0.486
For this family, TFs with SR scores > 0.745 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
T01G6.7 Nuclear receptor 26 95

Links

Other Nuclear receptor family TFs
Other Caenorhabditis elegans TFs

32 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
CRE09222 Caenorhabditis remanei CRE09222 I 0.991
CBG01353 Caenorhabditis briggsae CBG01353 I 0.986
CRE09225 Caenorhabditis remanei CRE09225 N 0.902
CBG01357 Caenorhabditis briggsae CBG01357 N 0.886
CBN21664 Caenorhabditis brenneri CBN21664 N 0.881
nhr-177 Caenorhabditis elegans WBGene00017503 D 0.869
CRE14845 Caenorhabditis remanei CRE14845 I 0.851
CBG06614 Caenorhabditis briggsae CBG06614 I 0.848
CBN17580 Caenorhabditis brenneri CBN17580 N 0.845
CRE09175 Caenorhabditis remanei CRE09175 N 0.843
CBG01233 Caenorhabditis briggsae CBG01233 N 0.843
CBN18082 Caenorhabditis brenneri CBN18082 I 0.842
nhr-99 Caenorhabditis elegans WBGene00003689 I 0.831
CRE16082 Caenorhabditis remanei CRE16082 I 0.829
CRE09227 Caenorhabditis remanei CRE09227 N 0.824
CRE09224 Caenorhabditis remanei CRE09224 N 0.823
CBN00299 Caenorhabditis brenneri CBN00299 I 0.823
CBG19144 Caenorhabditis briggsae CBG19144 I 0.810
CRE18428 Caenorhabditis remanei CRE18428 I 0.807
nhr-98 Caenorhabditis elegans WBGene00003688 I 0.807
CRE05779 Caenorhabditis remanei CRE05779 I 0.801
nhr-202 Caenorhabditis elegans WBGene00019742 I 0.800
CBG01229 Caenorhabditis briggsae CBG01229 N 0.792
nhr-228 Caenorhabditis elegans WBGene00020852 N 0.787
CBN07208 Caenorhabditis brenneri CBN07208 N 0.786
CBG01234 Caenorhabditis briggsae CBG01234 N 0.778
nhr-201 Caenorhabditis elegans WBGene00019741 I 0.764
nhr-203 Caenorhabditis elegans WBGene00019743 N 0.763
L889_g6806 Steinernema feltiae L889_g6806 N 0.762
nhr-123 Caenorhabditis elegans WBGene00003713 I 0.756
nhr-59 Caenorhabditis elegans WBGene00003649 I 0.753
CRE18699 Caenorhabditis remanei CRE18699 I 0.748