nhr-79 (Caenorhabditis elegans)
Nuclear receptor

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00105 (zf-C4) IPR001628 WBGene00003669 T306192_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
Predicted to enable DNA-binding transcription factor activity; sequence-specific DNA binding activity; and zinc ion binding activity. Predicted to be involved in regulation of transcription, DNA-templated. Predicted to be located in nucleus. Is expressed in several structures, including Eala; Ealaa; Ealp; amphid neurons; and intestine. [provided by Alliance of Genome Resources, Apr 2022]

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
XP_002647782.1
M02420_2.00 		Caenorhabditis briggsae
NYGTAGYN
NRCTACRN		 PBM
Weirauch et al.(2014)
pTH5737 		0.985 0.886
For this family, TFs with SR scores > 0.745 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
T26H2.9a Nuclear receptor 4 76
T26H2.9b Nuclear receptor 4 76

Links

Other Nuclear receptor family TFs
Other Caenorhabditis elegans TFs

9 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
CRE23397 Caenorhabditis remanei CRE23397 I 0.986
XP_002647782.1 Caenorhabditis briggsae XP_002647782.1 D 0.985
CBN28846 Caenorhabditis brenneri CBN28846 I 0.977
nhr-256 Caenorhabditis elegans WBGene00022805 I 0.906
CBN14151 Caenorhabditis brenneri CBN14151 I 0.902
CRE19042 Caenorhabditis remanei CRE19042 I 0.887
CJA15660 Caenorhabditis japonica CJA15660 I 0.885
CBG06550 Caenorhabditis briggsae CBG06550 I 0.796