CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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nhr-109
(
Caenorhabditis elegans
)
Nuclear receptor
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00105 (zf-C4)
IPR001628
WBGene00003699
T306221_2.00
Ensembl (2018-Dec-8)
Link out
NCBI Gene Info:
Predicted to enable DNA-binding transcription factor activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in Alzheimer's disease; coronary artery disease; hepatocellular carcinoma; lipid metabolism disorder; and myocardial infarction. Orthologous to human PPARA (peroxisome proliferator activated receptor alpha). [provided by Alliance of Genome Resources, Apr 2022]
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
nhr-86
M02415_2.00
Caenorhabditis elegans
KTGTAGTC
GACTACAM
PBM
Weirauch et al.(2014)
pTH8598
0.968
0.757
nhr-70
M00695_2.00
Caenorhabditis elegans
NYTGTAGYYD
HRRCTACARN
PBM
Narasimhan et al.(2015)
pTH9174
0.859
0.657
For this family, TFs with SR scores >
0.745
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
T12C9.5a
Nuclear receptor
1
17
MCRACRLTKCIEVGMNP
T12C9.5b
Nuclear receptor
8
31
KLADIRCMCRACRLTKCIEVGMNP
T12C9.5c
Nuclear receptor
11
80
SKCSICQESGDGFHFGAEACRACAAFFRRSISENKLYTCSGNNDCDVTVNIRCMCRACRLTKCIEVGMNP
Links
Other
Nuclear receptor
family TFs
Other
Caenorhabditis elegans
TFs
57 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy