Afo_R012175 (Aptenodytes forsteri)
Nuclear receptor

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00105 (zf-C4) IPR001628 Afo_R012175 T306501_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Nr3c1
M05886_2.00
Mus musculus
DGDACDBYNTGTNCY

RGNACANRVHGTHCH
SMiLE-seq
Isakova et al.(2017)
GR
0.994 1.000
Nr3c1
M09318_2.00
Mus musculus
RGNACABYNTGTNCY

RGNACANRVTGTNCY
Misc
Kulakovskiy et al.(2013)
GCR_MOUSE.H11MO.0.A
0.994 1.000
Nr3c1
M09614_2.00
Mus musculus
NRGDACABNNTGTNC

GNACANNVTGTHCYN
Misc
Heinz et al.(2010)
RAW264.7-GRE_Unpublished
0.994 1.000
NR3C2
M02395_2.00
Homo sapiens
NNRGDACAN

NTGTHCYNN
PBM
Weirauch et al.(2014)
pTH5924
0.991 0.929
NR3C2
M03382_2.00
Homo sapiens
NRGDACAHDRTGTHCYN

NRGDACAYHDTGTHCYN
SELEX
Jolma et al.(2013)
NR3C2_1
0.991 0.929
NR3C2
M05637_2.00
Homo sapiens
NGNACRNNNYGTNCN

NGNACRNNNYGTNCN
SELEX
Yin et al.(2017)
NR3C2_eDBD_HT-SELEX
0.991 0.929
NR3C2
M05638_2.00
Homo sapiens
NGNACRNNVYGTNCN

NGNACRBNNYGTNCN
SELEX
Yin et al.(2017)
NR3C2_eDBD_Methyl-HT-SELEX
0.991 0.929
NR3C1
M03366_2.00
Homo sapiens
NRGWACAYNRTGTWCYH

DRGWACAYNRTGTWCYN
SELEX
Jolma et al.(2013)
NR3C1_1
0.991 0.957
NR3C1
M05587_2.00
Homo sapiens
RGDACAYWDTGTHCY

RGDACAHWRTGTHCY
SELEX
Yin et al.(2017)
NR3C1_eDBD_HT-SELEX
0.991 0.957
NR3C1
M07986_2.00
Homo sapiens
DGNACABYBTGTNC

GNACAVRVTGTNCH
ChIP-seq
Gerstein et al.(2012)
A549_GR_HudsonAlpha
0.991 0.957
NR3C1
M07987_2.00
Homo sapiens
NNNNRGNACAYBBTGTHCYNN

NNRGDACAVVRTGTNCYNNNN
ChIP-seq
Gerstein et al.(2012)
ECC-1_GR_HudsonAlpha
0.991 0.957
NR3C1
M09270_2.00
Homo sapiens
DGNACABKNTGTNCY

RGNACANMVTGTNCH
Misc
Kulakovskiy et al.(2013)
GCR_HUMAN.H11MO.0.A
0.991 0.957
NR3C1
M09607_2.00
Homo sapiens
NRGNACABNVTGTNCY

RGNACABNVTGTNCYN
Misc
Heinz et al.(2010)
A549-GR_GSE32465
0.991 0.957
NR3C1
M11119_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GR_01
0.991 0.957
NR3C1
M11120_2.00
Homo sapiens
KKYACMRDVTGTYCTK

MAGRACABHYKGTRMM
Transfac
Matys et al.(2006)
V$GRE_C
0.991 0.957
NR3C1
M11121_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GR_Q4
0.991 0.957
NR3C1
M11122_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GR_Q6_01
0.991 0.957
NR3C1
M11123_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GR_Q6_02
0.991 0.957
NR3C1
M11124_2.00
Homo sapiens
NNWGVACANWDNNDNBHNN

NNDVNHNNHWNTGTBCWNN
Transfac
Matys et al.(2006)
V$GR_Q6
0.991 0.957
NR3C1
M11125_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$NR3C1_04
0.991 0.957
NR3C1
M05588_2.00
Homo sapiens
RGDACANDRYGTHCY

RGDACRYHNTGTHCY
SELEX
Yin et al.(2017)
NR3C1_eDBD_Methyl-HT-SELEX
0.991 0.957
PGR
M03923_2.00
Homo sapiens
DGNACANNNYGTNCY

RGNACRNNNTGTNCH
SELEX
Nitta et al.(2015)
PGR_1
0.989 0.886
PGR
M09266_2.00
Homo sapiens
RGNACWBYBTGTNCYN

NRGNACAVRVWGTNCY
Misc
Kulakovskiy et al.(2013)
PRGR_HUMAN.H11MO.0.A
0.989 0.886
Pgr
M09326_2.00
Mus musculus
RGNACWBYNTGTNCY

RGNACANRVWGTNCY
Misc
Kulakovskiy et al.(2013)
PRGR_MOUSE.H11MO.0.A
0.989 0.886
PGR
M09603_2.00
Homo sapiens
RNACWNNNWGTNCHN

NDGNACWNNNWGTNY
Misc
Heinz et al.(2010)
T47D-PR_GSE31130
0.989 0.886
PGR
M11095_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PR_01
0.989 0.886
PGR
M11096_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PR_02
0.989 0.886
PGR
M11097_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PR_Q6
0.989 0.886
Ar
M00821_2.00
Mus musculus
NRRGAACAYN

NRTGTTCYYN
PBM
Weirauch et al.(2013)
pTH1739
0.974 0.771
AR
M03389_2.00
Homo sapiens
DRGWACRHVDYGTWCCY

RGGWACRHBDYGTWCYH
SELEX
Jolma et al.(2013)
AR_1
0.974 0.771
AR
M03390_2.00
Homo sapiens
DRGWACAYNRTGTWCYY

RRGWACAYNRTGTWCYH
SELEX
Jolma et al.(2013)
AR_2
0.974 0.771
Ar
M03436_2.00
Mus musculus
NRGHACAYNVYGTWCYN

NRGWACRBNRTGTDCYN
SELEX
Jolma et al.(2013)
Ar_1
0.974 0.771
AR
M09288_2.00
Homo sapiens
DRYAAAYADNNNRGNACA

TGTNCYNNNHTRTTTRYH
Misc
Kulakovskiy et al.(2013)
ANDR_HUMAN.H11MO.0.A
0.974 0.771
Ar
M09331_2.00
Mus musculus
NRGNACABRVTGTNCY

RGNACABYVTGTNCYN
Misc
Kulakovskiy et al.(2013)
ANDR_MOUSE.H11MO.0.A
0.974 0.771
AR
M09610_2.00
Homo sapiens
NRGNACABNVTGTNCY

RGNACABNVTGTNCYN
Misc
Heinz et al.(2010)
LNCAP-AR_GSE27824
0.974 0.771
AR
M09609_2.00
Homo sapiens
SHDRGVACAS

STGTBCYHDS
Misc
Heinz et al.(2010)
LNCaP-AR_GSE27824
0.974 0.771
AR
M11157_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$AR_01
0.974 0.771
AR
M11158_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$AR_02
0.974 0.771
AR
M11159_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$AR_03
0.974 0.771
AR
M11160_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$AR_04
0.974 0.771
AR
M11161_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$AR_11
0.974 0.771
AR
M11162_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$AR_13
0.974 0.771
AR
M11163_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$AR_14_H
0.974 0.771
AR
M11164_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$AR_Q2
0.974 0.771
AR
M11165_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$AR_Q6_01
0.974 0.771
AR
M11166_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$AR_Q6
0.974 0.771
For this family, TFs with SR scores > 0.745 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Afo_R012175 Nuclear receptor 415 484

Links

Other Nuclear receptor family TFs
Other Aptenodytes forsteri TFs

Invalid Input OrderBy

271 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action