CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Alligator_sinensis_CCG005392.1
(
Alligator sinensis
)
Nuclear receptor
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00105 (zf-C4)
IPR001628
Alligator_sinensis_CCG005392.1
T306523_2.00
GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ENSPMAG00000000180
M02403_2.00
Petromyzon marinus
RGKWCRN
NYGWMCY
PBM
Weirauch et al.(2014)
pTH5509
0.959
0.794
VDR
M03363_2.00
Homo sapiens
GRGTTCAYHGRGTTCA
TGAACYCDRTGAACYC
SELEX
Jolma et al.(2013)
VDR_1
0.949
0.868
Vdr
M03429_2.00
Mus musculus
RRGTTCAYHGRGTTCA
TGAACYCDRTGAACYY
SELEX
Jolma et al.(2013)
Vdr_1
0.949
0.868
VDR
M05877_2.00
Homo sapiens
HRRGTTCA
TGAACYYD
SMiLE-seq
Isakova et al.(2017)
VDR
0.949
0.868
VDR
M09269_2.00
Homo sapiens
NRGGKCANNGRGKKCR
YGMMCYCNNTGMCCYN
Misc
Kulakovskiy et al.(2013)
VDR_HUMAN.H11MO.0.A
0.949
0.868
Vdr
M09315_2.00
Mus musculus
NRGGKCANNGRGKKCR
YGMMCYCNNTGMCCYN
Misc
Kulakovskiy et al.(2013)
VDR_MOUSE.H11MO.0.A
0.949
0.868
VDR
M09606_2.00
Homo sapiens
NRRGGTCANNRRGKKCANNN
NNNTGMMCYYNNTGACCYYN
Misc
Heinz et al.(2010)
GM10855-VDR+vitD_GSE22484
0.949
0.868
VDR
M11116_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$VDR_Q3
0.949
0.868
VDR
M11117_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$VDR_Q6_01
0.949
0.868
VDR
M11118_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$VDR_Q6
0.949
0.868
NR1I2
M03925_2.00
Homo sapiens
RGKKCRNNVRGKKCR
YGMMCYBNNYGMMCY
SELEX
Nitta et al.(2015)
NR1I2_1
0.874
0.662
NR1I2
M05625_2.00
Homo sapiens
VRGTTCRNNSRGKTCRH
DYGAMCYSNNYGAACYB
SELEX
Yin et al.(2017)
NR1I2_eDBD_HT-SELEX
0.874
0.662
NR1I2
M09283_2.00
Homo sapiens
DDRRBTYMDNNRAGKTCAN
NTGAMCTYNNHKRAVYYHH
Misc
Kulakovskiy et al.(2013)
NR1I2_HUMAN.H11MO.0.C
0.874
0.662
NR1I2
M05626_2.00
Homo sapiens
VRGKKCRNNVRGKKCRN
NYGMMCYBNNYGMMCYB
SELEX
Yin et al.(2017)
NR1I2_eDBD_Methyl-HT-SELEX
0.874
0.662
ENSGALG00000028624
M02398_2.00
Gallus gallus
GRGKTCAH
DTGAMCYC
PBM
Weirauch et al.(2014)
pTH6492
0.773
0.618
For this family, TFs with SR scores >
0.745
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Alligator_sinensis_CCG005392.1
Nuclear receptor
23
90
RICGVCGDKATGFHFNAMTCEGCKGFFRRSMKRKAMFTCPFNSDCKITKDNRRHCQACRLKRCLRVIS
Links
Other
Nuclear receptor
family TFs
Other
Alligator sinensis
TFs
109 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
ENSPSIG00000018108
Pelodiscus sinensis
ENSPSIG00000018108
I
0.966
Cmyd_10006875
Chelonia mydas
Cmyd_10006875
I
0.966
Pvit_07440
Pogona vitticeps
Pvit_07440
I
0.964
VDR
Anolis carolinensis
ENSACAG00000013485
I
0.964
ENSLACG00000019104
Latimeria chalumnae
ENSLACG00000019104
I
0.961
ENSLOCG00000005194
Lepisosteus oculatus
ENSLOCG00000005194
I
0.959
vdralpha
Oryzias latipes
ENSORLG00000001063
I
0.959
ENSONIG00000019378
Oreochromis niloticus
ENSONIG00000019378
I
0.959
ENSONIG00000009200
Oreochromis niloticus
ENSONIG00000009200
I
0.959
vdrb
Tetraodon nigroviridis
ENSTNIG00000007031
I
0.959
vdra
Gasterosteus aculeatus
ENSGACG00000004763
I
0.959
ENSPFOG00000001655
Poecilia formosa
ENSPFOG00000001655
I
0.959
ENSGMOG00000012720
Gadus morhua
ENSGMOG00000012720
I
0.959
ENSGMOG00000019451
Gadus morhua
ENSGMOG00000019451
I
0.959
ENSPFOG00000014233
Poecilia formosa
ENSPFOG00000014233
I
0.959
ENSPMAG00000000180
Petromyzon marinus
ENSPMAG00000000180
D
0.959
vdrb
Danio rerio
ENSDARG00000070721
I
0.959
vdrb
Gasterosteus aculeatus
ENSGACG00000007975
I
0.959
vdr
Oryzias latipes
ENSORLG00000016402
I
0.959
vdra
Takifugu rubripes
ENSTRUG00000011907
I
0.959
ENSXMAG00000004608
Xiphophorus maculatus
ENSXMAG00000004608
I
0.959
vdrb
Takifugu rubripes
ENSTRUG00000011576
I
0.959
ENSAMXG00000019854
Astyanax mexicanus
ENSAMXG00000019854
I
0.959
ENSAMXG00000012991
Astyanax mexicanus
ENSAMXG00000012991
I
0.959
ENSXMAG00000018707
Xiphophorus maculatus
ENSXMAG00000018707
I
0.959
vdr.S
Xenopus laevis
XB-GENE-864847
I
0.956
Afo_R013462
Aptenodytes forsteri
Afo_R013462
I
0.954
vdr
Xenopus tropicalis
XB-GENE-486505
I
0.953
ENSTSYG00000003990
Tarsius syrichta
ENSTSYG00000003990
I
0.952
VDR
Taeniopygia guttata
ENSTGUG00000017093
I
0.951
Aan_R009572
Calypte anna
Aan_R009572
I
0.951
ENSGALG00000026166
Gallus gallus
ENSGALG00000026166
I
0.951
VDR
Meleagris gallopavo
ENSMGAG00000004846
I
0.951
Gfo_R005027
Geospiza fortis
Gfo_R005027
I
0.950
VDR
Oryctolagus cuniculus
ENSOCUG00000027507
I
0.949
VDR
Otolemur garnettii
ENSOGAG00000005480
I
0.949
Vdr
Mus musculus
ENSMUSG00000022479
D
0.949
ENSNLEG00000017900
Nomascus leucogenys
ENSNLEG00000017900
I
0.949
ENSSTOG00000026741
Ictidomys tridecemlineatus
ENSSTOG00000026741
I
0.949
VDR
Tursiops truncatus
ENSTTRG00000012578
I
0.949
ENSMMUP00000008847
Macaca fascicularis
ENSMMUP00000008847
I
0.949
ENSP00000229022-D1
Bos grunniens
ENSP00000229022-D1
I
0.949
Myotis_brandtii_VDR_10022134
Myotis brandtii
Myotis_brandtii_VDR_10022134
I
0.949
VDR
Tupaia belangeri
ENSTBEG00000005717
I
0.949
ENSMPUG00000000419
Mustela putorius furo
ENSMPUG00000000419
I
0.949
ENSPPYG00000004448
Pongo abelii
ENSPPYG00000004448
I
0.949
VDR
Pteropus vampyrus
ENSPVAG00000011085
I
0.949
Vdr
Rattus norvegicus
ENSRNOG00000054420
I
0.949
VDR
Sus scrofa
ENSSSCG00000020864
I
0.949
ENSPANG00000011327
Papio anubis
ENSPANG00000011327
I
0.949
ENSOARG00000019372
Ovis aries
ENSOARG00000019372
I
0.949
VDR
Equus caballus
ENSECAG00000015822
I
0.949
VDR
Dasypus novemcinctus
ENSDNOG00000039161
I
0.949
ENSMODG00000028774
Monodelphis domestica
ENSMODG00000028774
I
0.949
VDR
Felis catus
ENSFCAG00000024594
I
0.949
VDR
Homo sapiens
ENSG00000111424
D
0.949
ENSCSAG00000006576
Chlorocebus sabaeus
ENSCSAG00000006576
I
0.949
ENSCPOG00000006025
Cavia porcellus
ENSCPOG00000006025
I
0.949
VDR
Bos taurus
ENSBTAG00000016414
I
0.949
ENSAMEG00000013706
Ailuropoda melanoleuca
ENSAMEG00000013706
I
0.949
VDR
Canis familiaris
ENSCAFG00000009103
I
0.949
ENSCHOG00000008514
Choloepus hoffmanni
ENSCHOG00000008514
I
0.949
VDR
Callithrix jacchus
ENSCJAG00000015018
I
0.949
VDR
Gorilla gorilla
ENSGGOG00000016473
I
0.949
VDR
Erinaceus europaeus
ENSEEUG00000011116
I
0.949
ENSMEUG00000014791
Macropus eugenii
ENSMEUG00000014791
I
0.949
VDR
Myotis lucifugus
ENSMLUG00000000912
I
0.949
VDR
Macaca mulatta
ENSMMUG00000006727
I
0.949
VDR
Loxodonta africana
ENSLAFG00000006418
I
0.949
VDR
Microcebus murinus
ENSMICG00000009017
I
0.949
ENSPMAG00000003695
Petromyzon marinus
ENSPMAG00000003695
I
0.932
vdr-a
Ciona intestinalis
ENSCING00000020740
I
0.902
vdra
Tetraodon nigroviridis
ENSTNIG00000005559
I
0.897
ENSLACG00000010334
Latimeria chalumnae
ENSLACG00000010334
I
0.884
NR1I2
Otolemur garnettii
ENSOGAG00000006017
I
0.874
ENSTSYG00000010757
Tarsius syrichta
ENSTSYG00000010757
I
0.874
NR1I2
Homo sapiens
ENSG00000144852
D
0.874
NR1I2
Myotis lucifugus
ENSMLUG00000002877
I
0.874
NR1I2
Callithrix jacchus
ENSCJAG00000008854
I
0.874
ENSP00000336528
Macaca fascicularis
ENSP00000336528
I
0.874
Myotis_brandtii_NR1I2_10031787
Myotis brandtii
Myotis_brandtii_NR1I2_10031787
I
0.874
NR1I2
Macaca mulatta
ENSMMUG00000001976
I
0.874
NR1I2
Gorilla gorilla
ENSGGOG00000007361
I
0.874
ENSNLEG00000005060
Nomascus leucogenys
ENSNLEG00000005060
I
0.874
NR1I2
Pan troglodytes
ENSPTRG00000015263
I
0.874
NR1I2
Equus caballus
ENSECAG00000008728
I
0.874
NR1I2
Echinops telfairi
ENSETEG00000018117
I
0.874
nr1i2
Danio rerio
ENSDARG00000029766
I
0.857
ENSAMXG00000008863
Astyanax mexicanus
ENSAMXG00000008863
I
0.857
NR1I2
Bos taurus
ENSBTAG00000019557
I
0.856
ENSAMEG00000007006
Ailuropoda melanoleuca
ENSAMEG00000007006
I
0.854
nr1i2.S
Xenopus laevis
XB-GENE-865343
I
0.854
NR1I2
Felis catus
ENSFCAG00000006092
I
0.854
NR1I2
Sus scrofa
ENSSSCG00000011890
I
0.854
ENSP00000336528-D1
Bos grunniens
ENSP00000336528-D1
I
0.854
nr1i2.L
Xenopus laevis
XB-GENE-17336519
I
0.852
ENSCSAVG00000008466
Ciona savignyi
ENSCSAVG00000008466
I
0.827
ENSCSAVG00000001918
Ciona savignyi
ENSCSAVG00000001918
I
0.826
Cmyd_10001928
Chelonia mydas
Cmyd_10001928
I
0.824
ENSPSIG00000004437
Pelodiscus sinensis
ENSPSIG00000004437
I
0.824
NR1I2
Pteropus vampyrus
ENSPVAG00000000884
I
0.814
Alligator_sinensis_CCG006068.1
Alligator sinensis
Alligator_sinensis_CCG006068.1
I
0.811
ENSACAG00000001535
Anolis carolinensis
ENSACAG00000001535
I
0.794
ENSGALG00000028624
Gallus gallus
ENSGALG00000028624
D
0.773
Q9DFH3_CHICK
Gallus gallus
Q9DFH3_CHICK
I
0.773
NR1I2
Canis familiaris
ENSCAFG00000011094
I
0.752
NR1I2
Procavia capensis
ENSPCAG00000009674
I
0.752
NR1I2
Ochotona princeps
ENSOPRG00000010448
I
0.746
NR1I2
Oryctolagus cuniculus
ENSOCUG00000006125
I
0.746