ENSBTAP00000004229-D1 (Bos grunniens)
Nuclear receptor

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00105 (zf-C4) IPR001628 ENSBTAP00000004229-D1 T306647_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Nr1h2
M09620_2.00 		Mus musculus
RGGTYACTNNAGGTCA
TGACCTNNAGTRACCY		 Misc
Heinz et al.(2010)
RAW-LXRb.biotin_GSE21512 		0.969 0.914
Nr1h3
M09301_2.00 		Mus musculus
VDGDNCARAGKBCAN
NTGVMCTYTGNHCHB		 Misc
Kulakovskiy et al.(2013)
NR1H3_MOUSE.H11MO.0.A 		0.952 0.786
NR1H3
M09264_2.00 		Homo sapiens
NHRRGGBHABHNNRGGNCA
TGNCCYNNDVTDVCCYYDN		 Misc
Kulakovskiy et al.(2013)
NR1H3_HUMAN.H11MO.0.B 		0.951 0.786
NR1H4
M00368_2.00 		Homo sapiens
NVRGGTCANN
NNTGACCYBN		 PBM
Barrera et al.(2016)
NR1H4_REF 		0.911 0.686
NR1H4
M05876_2.00 		Homo sapiens
DRGKTCAHHKD
HMDDTGAMCYH		 SMiLE-seq
Isakova et al.(2017)
NR1H4 		0.911 0.686
NR1H4
M08152_2.00 		Homo sapiens
NNGGTCATTNN
NNAATGACCNN		 ChIP-seq
Mathelier et al.(2014)
MA1110.1 		0.911 0.686
NR1H4
M09263_2.00 		Homo sapiens
CCBVNVGGYCRBTGMCCYB
VRGGKCAVYGRCCBNBVGG		 Misc
Kulakovskiy et al.(2013)
NR1H4_HUMAN.H11MO.0.B 		0.911 0.686
Nr1h4
M09332_2.00 		Mus musculus
CCBVNVGGYCRBTGMCCYB
VRGGKCAVYGRCCBNBVGG		 Misc
Kulakovskiy et al.(2013)
NR1H4_MOUSE.H11MO.0.A 		0.911 0.686
Nr1h4
M09618_2.00 		Mus musculus
NRGGBCANTGVCCY
RGGBCANTGVCCYN		 Misc
Heinz et al.(2010)
Liver-FXR_Chong_et_al. 		0.911 0.686
NR1H4
M11086_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$FXR_Q2 		0.911 0.686
NR1H4
M11087_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$FXR_Q3 		0.911 0.686
NR1H4
M11088_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$FXR_Q5 		0.911 0.686
NR1H4
M11089_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$FXRRXR_Q5 		0.911 0.686
NR1H4
M00367_2.00 		Homo sapiens
NNNTWTTATDHNN
NNDHATAAWANNN		 PBM
Barrera et al.(2016)
NR1H4_C144R 		0.911 0.671
nr1h5.S
M11194_2.00 		Xenopus laevis Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$FXRIR1_Q6 		0.901 0.657
EcR
M06414_2.00 		Drosophila melanogaster
RAGGTCAW
WTGACCTY		 B1H
Zhu et al.(2011)
EcR_SANGER_5_FBgn0000546 		0.897 0.657
O77476_BRUPA
M02422_2.00 		Brugia pahangi
NRGGTCAN
NTGACCYN		 PBM
Weirauch et al.(2014)
pTH6019 		0.848 0.586
svp
M06423_2.00 		Drosophila melanogaster
ARGGTCA
TGACCYK		 B1H
Zhu et al.(2011)
svp_SANGER_5_FBgn0003651 		0.802 0.529
Q6VU64_APLCA
M02423_2.00 		Aplysia californica
NRGGTCAN
NTGACCYN		 PBM
Weirauch et al.(2014)
pTH6055 		0.800 0.557
Q969A9_BOMMO
M02410_2.00 		Bombyx mori
VRGGTCDN
NHGACCYB		 PBM
Weirauch et al.(2014)
pTH5516 		0.798 0.543
Hr78
M06430_2.00 		Drosophila melanogaster
HVAGGTCA
TGACCTBD		 B1H
Zhu et al.(2011)
Hr78_SANGER_5_FBgn0015239 		0.782 0.557
Nr2c1
M00812_2.00 		Mus musculus
NRRGGTCANN
NNTGACCYYN		 PBM
Weirauch et al.(2013)
pTH1284 		0.769 0.500
Nr2c1
M02399_2.00 		Mus musculus
RRGGTCAH
DTGACCYY		 PBM
Weirauch et al.(2014)
pTH3466 		0.769 0.500
NR2C1
M05597_2.00 		Homo sapiens
NRGKKCRYGAMMYN
NRKKTCRYGMMCYN		 SELEX
Yin et al.(2017)
NR2C1_eDBD_HT-SELEX_1 		0.769 0.500
NR2C1
M05598_2.00 		Homo sapiens
NRRGGTCAN
NTGACCYYN		 SELEX
Yin et al.(2017)
NR2C1_eDBD_HT-SELEX_2 		0.769 0.500
NR2C1
M09273_2.00 		Homo sapiens
RBYVRVAGGTCAB
VTGACCTBYBRVY		 Misc
Kulakovskiy et al.(2013)
NR2C1_HUMAN.H11MO.0.C 		0.769 0.500
Nr2c1
M09304_2.00 		Mus musculus
RBYVRVAGGTCAB
VTGACCTBYBRVY		 Misc
Kulakovskiy et al.(2013)
NR2C1_MOUSE.H11MO.0.C 		0.769 0.500
NR2C1
M05599_2.00 		Homo sapiens
NRRGGTCAN
NTGACCYYN		 SELEX
Yin et al.(2017)
NR2C1_eDBD_Methyl-HT-SELEX_1 		0.769 0.500
NR2C1
M05600_2.00 		Homo sapiens
RRGGTCRYGACCYY
RRGGTCRYGACCYY		 SELEX
Yin et al.(2017)
NR2C1_eDBD_Methyl-HT-SELEX_2 		0.769 0.500
Esr1
M00813_2.00 		Mus musculus
NRKGTCANNN
NNNTGACMYN		 PBM
Weirauch et al.(2013)
pTH3510 		0.768 0.514
ESR1
M03356_2.00 		Homo sapiens
NRGGTCAMVRTGACCTK
MAGGTCAYBKTGACCYN		 SELEX
Jolma et al.(2013)
ESR1_1 		0.768 0.514
ESR1
M05569_2.00 		Homo sapiens
NAGGTCAYSRTGACCTN
NAGGTCAYSRTGACCTN		 SELEX
Yin et al.(2017)
ESR1_eDBD_HT-SELEX 		0.768 0.514
ESR1
M05571_2.00 		Homo sapiens
NRGGTCANSNTGACCYN
NRGGTCANSNTGACCYN		 SELEX
Yin et al.(2017)
ESR1_FL_HT-SELEX 		0.768 0.514
ESR1
M07985_2.00 		Homo sapiens
DNBYMAAGGTCANN
NNTGACCTTKRVNH		 ChIP-seq
Gerstein et al.(2012)
HepG2_ERRA_Stanford 		0.768 0.514
ESR1
M08217_2.00 		Homo sapiens
NHNRGGTCANNNTGNCCY
RGGNCANNNTGACCYNDN		 ChIP-seq
Contrino et al.(2012)
Mv66 		0.768 0.514
ESR1
M08218_2.00 		Homo sapiens
CCAAGGTCAS
STGACCTTGG		 ChIP-seq
Contrino et al.(2012)
Mv67 		0.768 0.514
ESR1
M09267_2.00 		Homo sapiens
RGGKCABMNTGMCCY
RGGKCANKVTGMCCY		 Misc
Kulakovskiy et al.(2013)
ESR1_HUMAN.H11MO.0.A 		0.768 0.514
Esr1
M09309_2.00 		Mus musculus
RGGDCABKSTGWCCY
RGGWCASMVTGHCCY		 Misc
Kulakovskiy et al.(2013)
ESR1_MOUSE.H11MO.0.A 		0.768 0.514
ESR1
M09604_2.00 		Homo sapiens
NRGGTCANNNTGACC
GGTCANNNTGACCYN		 Misc
Heinz et al.(2010)
MCF7-ERa_Unpublished 		0.768 0.514
ESR1
M11098_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$ERALPHA_01 		0.768 0.514
ESR1
M11099_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$ERALPHA_Q4 		0.768 0.514
ESR1
M11100_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$ERALPHA_Q6_01 		0.768 0.514
ESR1
M11101_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$ERALPHA_Q6_02 		0.768 0.514
ESR1
M11102_2.00 		Homo sapiens
NHRGGTCAVNNHNNHYBNN
NNVRDNNDNNBTGACCYDN		 Transfac
Matys et al.(2006)
V$ER_Q6 		0.768 0.514
ESR1
M11103_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$ESR1_04 		0.768 0.514
ESR1
M11104_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$ESR1_05 		0.768 0.514
ESR1
M05570_2.00 		Homo sapiens
NAGGTCAYSRYGACCTH
DAGGTCRYSRTGACCTN		 SELEX
Yin et al.(2017)
ESR1_eDBD_Methyl-HT-SELEX 		0.768 0.514
ESR1
M05572_2.00 		Homo sapiens
NRGGTCANSBYGACCYN
NRGGTCRVSNTGACCYN		 SELEX
Yin et al.(2017)
ESR1_FL_Methyl-HT-SELEX 		0.768 0.514
Smp_105090
M02412_2.00 		Schistosoma mansoni
RGGTCANN
NNTGACCY		 PBM
Weirauch et al.(2014)
pTH6174 		0.766 0.543
Esr2
M01297_2.00 		Mus musculus
NNRGGTCAH
DTGACCYNN		 PBM
Lambert et al.(2019)
pTH3511 		0.756 0.514
ESR2
M08154_2.00 		Homo sapiens
RGGTCASNNWGNCCY
RGGNCWNNSTGACCY		 ChIP-seq
Mathelier et al.(2014)
MA0258.2 		0.756 0.514
ESR2
M09279_2.00 		Homo sapiens
RGGKCRVRSYGMCCY
RGGKCRSYBYGMCCY		 Misc
Kulakovskiy et al.(2013)
ESR2_HUMAN.H11MO.0.A 		0.756 0.514
Esr2
M09311_2.00 		Mus musculus
RGGKCRVRSYGMCCY
RGGKCRSYBYGMCCY		 Misc
Kulakovskiy et al.(2013)
ESR2_MOUSE.H11MO.0.A 		0.756 0.514
ESR2
M11146_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$ERBETA_Q5_01 		0.756 0.514
ESR2
M11147_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$ERBETA_Q5 		0.756 0.514
NR2F6
M02396_2.00 		Homo sapiens
NNRGGTCR
YGACCYNN		 PBM
Weirauch et al.(2014)
pTH6747 		0.750 0.529
NR2F6
M03386_2.00 		Homo sapiens
RRGGTCAAAAGGTCA
TGACCTTTTGACCYY		 SELEX
Jolma et al.(2013)
NR2F6_1 		0.750 0.529
NR2F6
M03387_2.00 		Homo sapiens
RRGGTCAAAGGTCA
TGACCTTTGACCYY		 SELEX
Jolma et al.(2013)
NR2F6_2 		0.750 0.529
NR2F6
M03388_2.00 		Homo sapiens
NRGGTCAAAGGTCA
TGACCTTTGACCYN		 SELEX
Jolma et al.(2013)
NR2F6_3 		0.750 0.529
NR2F6
M05641_2.00 		Homo sapiens
RRGGTCAAAGGTCAN
NTGACCTTTGACCYY		 SELEX
Yin et al.(2017)
NR2F6_eDBD_HT-SELEX_1 		0.750 0.529
NR2F6
M05642_2.00 		Homo sapiens
RAGGTCANTGACCTY
RAGGTCANTGACCTY		 SELEX
Yin et al.(2017)
NR2F6_eDBD_HT-SELEX_2 		0.750 0.529
NR2F6
M05645_2.00 		Homo sapiens
NRGGTCARAGGTCRN
NYGACCTYTGACCYN		 SELEX
Yin et al.(2017)
NR2F6_FL_HT-SELEX_1 		0.750 0.529
NR2F6
M05646_2.00 		Homo sapiens
NRGGTCANYGACCYY
RRGGTCRNTGACCYN		 SELEX
Yin et al.(2017)
NR2F6_FL_HT-SELEX_2 		0.750 0.529
NR2F6
M11153_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$EAR2_Q2 		0.750 0.529
NR2F6
M11154_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$EAR2_Q4 		0.750 0.529
NR2F6
M05643_2.00 		Homo sapiens
RRGGTCAAAGGTCRN
NYGACCTTTGACCYY		 SELEX
Yin et al.(2017)
NR2F6_eDBD_Methyl-HT-SELEX_1 		0.750 0.529
NR2F6
M05644_2.00 		Homo sapiens
RRGGTCRNYGACCYY
RRGGTCRNYGACCYY		 SELEX
Yin et al.(2017)
NR2F6_eDBD_Methyl-HT-SELEX_2 		0.750 0.529
NR2F6
M05647_2.00 		Homo sapiens
NRGGTYADRGGKBRN
NYVMCCYHTRACCYN		 SELEX
Yin et al.(2017)
NR2F6_FL_Methyl-HT-SELEX_1 		0.750 0.529
NR2F6
M05648_2.00 		Homo sapiens
NRGGTCANYGACCYN
NRGGTCRNTGACCYN		 SELEX
Yin et al.(2017)
NR2F6_FL_Methyl-HT-SELEX_2 		0.750 0.529
RORC
M02405_2.00 		Tetraodon nigroviridis
NGAGGTCANN
NNTGACCTCN		 PBM
Weirauch et al.(2014)
pTH6612 		0.748 0.500
Nr2f2
M00184_2.00 		Mus musculus
RRGGTCAN
NTGACCYY		 PBM
Badis et al.(2009)
Nr2f2_2192 		0.748 0.514
NR2F2
M08157_2.00 		Homo sapiens
NNAAGGTCANN
NNTGACCTTNN		 ChIP-seq
Mathelier et al.(2014)
MA1111.1 		0.748 0.514
NR2F2
M08223_2.00 		Homo sapiens
AAAGGTCA
TGACCTTT		 ChIP-seq
Contrino et al.(2012)
Mv102 		0.748 0.514
NR2F2
M08224_2.00 		Homo sapiens
GGKCARAGGB
VCCTYTGMCC		 ChIP-seq
Contrino et al.(2012)
Mv104 		0.748 0.514
NR2F2
M09293_2.00 		Homo sapiens
NARRGGTCADRDN
NHYHTGACCYYTN		 Misc
Kulakovskiy et al.(2013)
COT2_HUMAN.H11MO.0.A 		0.748 0.514
Nr2f2
M09325_2.00 		Mus musculus
NNHRAGGTCANVD
HBNTGACCTYDNN		 Misc
Kulakovskiy et al.(2013)
COT2_MOUSE.H11MO.0.A 		0.748 0.514
NR2F2
M11180_2.00 		Homo sapiens
WRRKKTCAARGGYTCA
TGARCCYTTGAMMYYW		 Transfac
Matys et al.(2006)
V$ARP1_01 		0.748 0.514
NR2F2
M11181_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$COUPTF2_Q6 		0.748 0.514
For this family, TFs with SR scores > 0.745 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSBTAP00000004229-D1 Nuclear receptor 80 151

Links

Other Nuclear receptor family TFs
Other Bos grunniens TFs

Invalid Input OrderBy

890 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action