ENSP00000336528-D1 (Bos grunniens)
Nuclear receptor

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00105 (zf-C4) IPR001628 ENSP00000336528-D1 T306698_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
NR1I2
M03925_2.00 		Homo sapiens
RGKKCRNNVRGKKCR
YGMMCYBNNYGMMCY		 SELEX
Nitta et al.(2015)
NR1I2_1 		0.983 0.957
NR1I2
M05625_2.00 		Homo sapiens
VRGTTCRNNSRGKTCRH
DYGAMCYSNNYGAACYB		 SELEX
Yin et al.(2017)
NR1I2_eDBD_HT-SELEX 		0.983 0.957
NR1I2
M09283_2.00 		Homo sapiens
DDRRBTYMDNNRAGKTCAN
NTGAMCTYNNHKRAVYYHH		 Misc
Kulakovskiy et al.(2013)
NR1I2_HUMAN.H11MO.0.C 		0.983 0.957
NR1I2
M05626_2.00 		Homo sapiens
VRGKKCRNNVRGKKCRN
NYGMMCYBNNYGMMCYB		 SELEX
Yin et al.(2017)
NR1I2_eDBD_Methyl-HT-SELEX 		0.983 0.957
Nr1i2
M09316_2.00 		Mus musculus
DDRRBTYMDNNRAGKTCAN
NTGAMCTYNNHKRAVYYHH		 Misc
Kulakovskiy et al.(2013)
NR1I2_MOUSE.H11MO.0.C 		0.954 0.929
ENSPMAG00000000180
M02403_2.00 		Petromyzon marinus
RGKWCRN
NYGWMCY		 PBM
Weirauch et al.(2014)
pTH5509 		0.945 0.671
VDR
M03363_2.00 		Homo sapiens
GRGTTCAYHGRGTTCA
TGAACYCDRTGAACYC		 SELEX
Jolma et al.(2013)
VDR_1 		0.924 0.657
Vdr
M03429_2.00 		Mus musculus
RRGTTCAYHGRGTTCA
TGAACYCDRTGAACYY		 SELEX
Jolma et al.(2013)
Vdr_1 		0.924 0.657
VDR
M05877_2.00 		Homo sapiens
HRRGTTCA
TGAACYYD		 SMiLE-seq
Isakova et al.(2017)
VDR 		0.924 0.657
VDR
M09269_2.00 		Homo sapiens
NRGGKCANNGRGKKCR
YGMMCYCNNTGMCCYN		 Misc
Kulakovskiy et al.(2013)
VDR_HUMAN.H11MO.0.A 		0.924 0.657
Vdr
M09315_2.00 		Mus musculus
NRGGKCANNGRGKKCR
YGMMCYCNNTGMCCYN		 Misc
Kulakovskiy et al.(2013)
VDR_MOUSE.H11MO.0.A 		0.924 0.657
VDR
M09606_2.00 		Homo sapiens
NRRGGTCANNRRGKKCANNN
NNNTGMMCYYNNTGACCYYN		 Misc
Heinz et al.(2010)
GM10855-VDR+vitD_GSE22484 		0.924 0.657
VDR
M11116_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$VDR_Q3 		0.924 0.657
VDR
M11117_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$VDR_Q6_01 		0.924 0.657
VDR
M11118_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$VDR_Q6 		0.924 0.657
ENSGALG00000028624
M02398_2.00 		Gallus gallus
GRGKTCAH
DTGAMCYC		 PBM
Weirauch et al.(2014)
pTH6492 		0.883 0.643
NR1I3
M03924_2.00 		Homo sapiens
RGKDYRNNNNRGKKYR
YRMMCYNNNNYRHMCY		 SELEX
Nitta et al.(2015)
NR1I3_1 		0.840 0.614
NR1I3
M05619_2.00 		Homo sapiens
WDAGTTCAH
DTGAACTHW		 SELEX
Yin et al.(2017)
NR1I3_FL_HT-SELEX 		0.840 0.614
NR1I3
M09281_2.00 		Homo sapiens
DRGGTCANNNRAGTTYAN
NTRAACTYNNNTGACCYH		 Misc
Kulakovskiy et al.(2013)
NR1I3_HUMAN.H11MO.0.C 		0.840 0.614
NR1I3
M05620_2.00 		Homo sapiens
WDAGTTCRN
NYGAACTHW		 SELEX
Yin et al.(2017)
NR1I3_FL_Methyl-HT-SELEX 		0.840 0.614
Nr1i3
M09302_2.00 		Mus musculus
DRGGTCANNNRAGTTYAN
NTRAACTYNNNTGACCYH		 Misc
Kulakovskiy et al.(2013)
NR1I3_MOUSE.H11MO.0.C 		0.818 0.600
For this family, TFs with SR scores > 0.745 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSP00000336528-D1 Nuclear receptor 89 159

Links

Other Nuclear receptor family TFs
Other Bos grunniens TFs

187 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
NR1I2 Sus scrofa ENSSSCG00000011890 I 0.990
NR1I2 Bos taurus ENSBTAG00000019557 I 0.989
Myotis_brandtii_NR1I2_10031787 Myotis brandtii Myotis_brandtii_NR1I2_10031787 I 0.984
NR1I2 Myotis lucifugus ENSMLUG00000002877 I 0.984
NR1I2 Callithrix jacchus ENSCJAG00000008854 I 0.983
ENSP00000336528 Macaca fascicularis ENSP00000336528 I 0.983
NR1I2 Gorilla gorilla ENSGGOG00000007361 I 0.983
NR1I2 Homo sapiens ENSG00000144852 D 0.983
NR1I2 Macaca mulatta ENSMMUG00000001976 I 0.983
ENSTSYG00000010757 Tarsius syrichta ENSTSYG00000010757 I 0.983
NR1I2 Pan troglodytes ENSPTRG00000015263 I 0.983
NR1I2 Equus caballus ENSECAG00000008728 I 0.983
ENSNLEG00000005060 Nomascus leucogenys ENSNLEG00000005060 I 0.983
NR1I2 Echinops telfairi ENSETEG00000018117 I 0.983
NR1I2 Felis catus ENSFCAG00000006092 I 0.980
ENSAMEG00000007006 Ailuropoda melanoleuca ENSAMEG00000007006 I 0.980
NR1I2 Otolemur garnettii ENSOGAG00000006017 I 0.972
NR1I2 Pteropus vampyrus ENSPVAG00000000884 I 0.972
nr1i2 Danio rerio ENSDARG00000029766 I 0.967
NR1I2 Ochotona princeps ENSOPRG00000010448 I 0.964
NR1I2 Procavia capensis ENSPCAG00000009674 I 0.963
ENSLACG00000010334 Latimeria chalumnae ENSLACG00000010334 I 0.962
NR1I2 Loxodonta africana ENSLAFG00000007829 I 0.957
ENSAMXG00000008863 Astyanax mexicanus ENSAMXG00000008863 I 0.956
ENSSTOG00000014988 Ictidomys tridecemlineatus ENSSTOG00000014988 I 0.954
Nr1i2 Rattus norvegicus ENSRNOG00000002906 I 0.954
Nr1i2 Dipodomys ordii ENSDORG00000003966 I 0.954
Nr1i2 Mus musculus ENSMUSG00000022809 D 0.954
NR1I2 Cavia porcellus ENSCPOG00000020161 I 0.954
ENSSHAG00000004437 Sarcophilus harrisii ENSSHAG00000004437 I 0.953
nr1i2.S Xenopus laevis XB-GENE-865343 I 0.952
nr1i2.L Xenopus laevis XB-GENE-17336519 I 0.952
ENSCSAVG00000001918 Ciona savignyi ENSCSAVG00000001918 I 0.952
ENSPSIG00000018108 Pelodiscus sinensis ENSPSIG00000018108 I 0.946
Cmyd_10006875 Chelonia mydas Cmyd_10006875 I 0.946
ENSGMOG00000012720 Gadus morhua ENSGMOG00000012720 I 0.945
ENSGMOG00000019451 Gadus morhua ENSGMOG00000019451 I 0.945
vdralpha Oryzias latipes ENSORLG00000001063 I 0.945
vdrb Takifugu rubripes ENSTRUG00000011576 I 0.945
ENSPFOG00000014233 Poecilia formosa ENSPFOG00000014233 I 0.945
ENSPMAG00000000180 Petromyzon marinus ENSPMAG00000000180 D 0.945
vdrb Tetraodon nigroviridis ENSTNIG00000007031 I 0.945
ENSPFOG00000001655 Poecilia formosa ENSPFOG00000001655 I 0.945
vdra Takifugu rubripes ENSTRUG00000011907 I 0.945
ENSXMAG00000004608 Xiphophorus maculatus ENSXMAG00000004608 I 0.945
ENSONIG00000009200 Oreochromis niloticus ENSONIG00000009200 I 0.945
ENSONIG00000019378 Oreochromis niloticus ENSONIG00000019378 I 0.945
vdr Oryzias latipes ENSORLG00000016402 I 0.945
ENSXMAG00000018707 Xiphophorus maculatus ENSXMAG00000018707 I 0.945
ENSLOCG00000005194 Lepisosteus oculatus ENSLOCG00000005194 I 0.945
ENSAMXG00000012991 Astyanax mexicanus ENSAMXG00000012991 I 0.945
Pvit_07440 Pogona vitticeps Pvit_07440 I 0.945
VDR Anolis carolinensis ENSACAG00000013485 I 0.945
vdra Gasterosteus aculeatus ENSGACG00000004763 I 0.945
vdrb Gasterosteus aculeatus ENSGACG00000007975 I 0.945
vdrb Danio rerio ENSDARG00000070721 I 0.945
vdr-a Ciona intestinalis ENSCING00000020740 I 0.945
ENSAMXG00000019854 Astyanax mexicanus ENSAMXG00000019854 I 0.945
ENSMEUG00000000113 Macropus eugenii ENSMEUG00000000113 I 0.943
ENSLACG00000019104 Latimeria chalumnae ENSLACG00000019104 I 0.943
NR1I2 Canis familiaris ENSCAFG00000011094 I 0.938
NR1I2 Oryctolagus cuniculus ENSOCUG00000006125 I 0.935
vdr.S Xenopus laevis XB-GENE-864847 I 0.933
vdr Xenopus tropicalis XB-GENE-486505 I 0.931
Afo_R013462 Aptenodytes forsteri Afo_R013462 I 0.928
VDR Taeniopygia guttata ENSTGUG00000017093 I 0.926
ENSGALG00000026166 Gallus gallus ENSGALG00000026166 I 0.926
VDR Meleagris gallopavo ENSMGAG00000004846 I 0.926
Aan_R009572 Calypte anna Aan_R009572 I 0.926
Gfo_R005027 Geospiza fortis Gfo_R005027 I 0.925
ENSPANG00000011327 Papio anubis ENSPANG00000011327 I 0.924
VDR Callithrix jacchus ENSCJAG00000015018 I 0.924
Myotis_brandtii_VDR_10022134 Myotis brandtii Myotis_brandtii_VDR_10022134 I 0.924
VDR Tursiops truncatus ENSTTRG00000012578 I 0.924
ENSCSAG00000006576 Chlorocebus sabaeus ENSCSAG00000006576 I 0.924
ENSCPOG00000006025 Cavia porcellus ENSCPOG00000006025 I 0.924
VDR Bos taurus ENSBTAG00000016414 I 0.924
Vdr Rattus norvegicus ENSRNOG00000054420 I 0.924
VDR Sus scrofa ENSSSCG00000020864 I 0.924
VDR Tupaia belangeri ENSTBEG00000005717 I 0.924
ENSAMEG00000013706 Ailuropoda melanoleuca ENSAMEG00000013706 I 0.924
VDR Pteropus vampyrus ENSPVAG00000011085 I 0.924
ENSPPYG00000004448 Pongo abelii ENSPPYG00000004448 I 0.924
VDR Canis familiaris ENSCAFG00000009103 I 0.924
VDR Dasypus novemcinctus ENSDNOG00000039161 I 0.924
ENSCHOG00000008514 Choloepus hoffmanni ENSCHOG00000008514 I 0.924
ENSP00000229022-D1 Bos grunniens ENSP00000229022-D1 I 0.924
VDR Homo sapiens ENSG00000111424 D 0.924
VDR Felis catus ENSFCAG00000024594 I 0.924
ENSMODG00000028774 Monodelphis domestica ENSMODG00000028774 I 0.924
ENSMPUG00000000419 Mustela putorius furo ENSMPUG00000000419 I 0.924
VDR Myotis lucifugus ENSMLUG00000000912 I 0.924
VDR Microcebus murinus ENSMICG00000009017 I 0.924
VDR Gorilla gorilla ENSGGOG00000016473 I 0.924
VDR Loxodonta africana ENSLAFG00000006418 I 0.924
ENSSTOG00000026741 Ictidomys tridecemlineatus ENSSTOG00000026741 I 0.924
ENSMEUG00000014791 Macropus eugenii ENSMEUG00000014791 I 0.924
Vdr Mus musculus ENSMUSG00000022479 D 0.924
VDR Macaca mulatta ENSMMUG00000006727 I 0.924
VDR Erinaceus europaeus ENSEEUG00000011116 I 0.924
ENSMMUP00000008847 Macaca fascicularis ENSMMUP00000008847 I 0.924
VDR Oryctolagus cuniculus ENSOCUG00000027507 I 0.924
VDR Otolemur garnettii ENSOGAG00000005480 I 0.924
ENSNLEG00000017900 Nomascus leucogenys ENSNLEG00000017900 I 0.924
ENSOARG00000019372 Ovis aries ENSOARG00000019372 I 0.924
VDR Equus caballus ENSECAG00000015822 I 0.924
ENSPMAG00000003695 Petromyzon marinus ENSPMAG00000003695 I 0.910
vdra Tetraodon nigroviridis ENSTNIG00000005559 I 0.909
nr1i2 Tetraodon nigroviridis ENSTNIG00000013932 I 0.909
ENSPSIG00000004437 Pelodiscus sinensis ENSPSIG00000004437 I 0.906
Alligator_sinensis_CCG006068.1 Alligator sinensis Alligator_sinensis_CCG006068.1 I 0.905
Cmyd_10001928 Chelonia mydas Cmyd_10001928 I 0.902
ENSACAG00000001535 Anolis carolinensis ENSACAG00000001535 I 0.885
ENSGALG00000028624 Gallus gallus ENSGALG00000028624 D 0.883
Q9DFH3_CHICK Gallus gallus Q9DFH3_CHICK I 0.883
Ogr03312 Ophisaurus gracilis Ogr03312 I 0.881
Pvit_09404 Pogona vitticeps Pvit_09404 I 0.874
Pvit_09406 Pogona vitticeps Pvit_09406 I 0.874
nr1i2 Takifugu rubripes ENSTRUG00000003245 I 0.858
Alligator_sinensis_CCG005392.1 Alligator sinensis Alligator_sinensis_CCG005392.1 I 0.854
ENSTSYG00000003990 Tarsius syrichta ENSTSYG00000003990 I 0.854
NR1I3 Cavia porcellus ENSCPOG00000015331 I 0.850
ENSOARG00000019817 Ovis aries ENSOARG00000019817 I 0.844
ENSSTOG00000003818 Ictidomys tridecemlineatus ENSSTOG00000003818 I 0.844
NR1I3 Homo sapiens ENSG00000143257 D 0.840
ENSNLEG00000014287 Nomascus leucogenys ENSNLEG00000014287 I 0.840
NR1I3 Pan troglodytes ENSPTRG00000001582 I 0.840
NR1I3 Callithrix jacchus ENSCJAG00000004783 I 0.840
NR1I3 Gorilla gorilla ENSGGOG00000005724 I 0.838
ENSPFOG00000007256 Poecilia formosa ENSPFOG00000007256 I 0.835
ENSCSAG00000002676 Chlorocebus sabaeus ENSCSAG00000002676 I 0.834
ENSP00000356959 Macaca fascicularis ENSP00000356959 I 0.834
NR1I3 Macaca mulatta ENSMMUG00000018128 I 0.834
ENSPANG00000014194 Papio anubis ENSPANG00000014194 I 0.834
NR1I3 Sorex araneus ENSSARG00000002684 I 0.833
EFV58098 Trichinella spiralis EFV58098 I 0.832
TMUE_s0008014200 Trichuris muris TMUE_s0008014200 I 0.832
D917_00700 Trichinella nativa D917_00700 I 0.832
D918_02615 Trichuris suis D918_02615 I 0.832
nr1i3 Xenopus tropicalis XB-GENE-479859 I 0.830
NR1I3 Otolemur garnettii ENSOGAG00000013738 I 0.826
SNAPOd2T00001873001 Oikopleura dioica SNAPOd2T00001873001 I 0.825
ENSAMEG00000015383 Ailuropoda melanoleuca ENSAMEG00000015383 I 0.824
ENSDORG00000001701 Dipodomys ordii ENSDORG00000001701 I 0.822
ENSCSAVG00000008466 Ciona savignyi ENSCSAVG00000008466 I 0.822
Nr1i3 Rattus norvegicus ENSRNOG00000003260 I 0.818
Nr1i3 Mus musculus ENSMUSG00000005677 D 0.818
nr1i2 Oryzias latipes ENSORLG00000017953 I 0.809
ENSXMAG00000003990 Xiphophorus maculatus ENSXMAG00000003990 I 0.807
ENSMEUG00000001987 Macropus eugenii ENSMEUG00000001987 I 0.793
ENSSHAG00000016687 Sarcophilus harrisii ENSSHAG00000016687 I 0.789
NR1I3 Dasypus novemcinctus ENSDNOG00000045179 I 0.786
SMU15000518 Schmidtea mediterranea SMU15000518 I 0.785
tetur01g10970 Tetranychus urticae tetur01g10970 I 0.785
TELCIR_16351 Teladorsagia circumcincta TELCIR_16351 I 0.774
NBR_0001980401 Nippostrongylus brasiliensis NBR_0001980401 I 0.774
ACOC_0001278301 Angiostrongylus costaricensis ACOC_0001278301 I 0.774
HCOI00910600 Haemonchus contortus HCOI00910600 I 0.773
HCOI00433800 Haemonchus contortus HCOI00433800 I 0.773
ANCCAN_11234 Ancylostoma caninum ANCCAN_11234 I 0.770
NECAME_11142 Necator americanus NECAME_11142 I 0.770
ENSPANG00000004760 Papio anubis ENSPANG00000004760 I 0.764
ENSCSAG00000007092 Chlorocebus sabaeus ENSCSAG00000007092 I 0.764
ENSPPYG00000013508 Pongo abelii ENSPPYG00000013508 I 0.764
NR1I3 Loxodonta africana ENSLAFG00000001180 I 0.758
NR1I3 Procavia capensis ENSPCAG00000013933 I 0.758
ENSPMAG00000008742 Petromyzon marinus ENSPMAG00000008742 I 0.756
nLs.2.1.2.g05295 Litomosoides sigmodontis nLs.2.1.2.g05295 I 0.755
nAv.1.0.1.g02667 Acanthocheilonema viteae nAv.1.0.1.g02667 I 0.755
OFLC_0000511401 Onchocerca flexuosa OFLC_0000511401 I 0.755
Bm2982 Brugia malayi Bm2982 I 0.755
WBGene00245913 Onchocerca volvulus WBGene00245913 I 0.755
nOo.2.0.1.g07306 Onchocerca ochengi nOo.2.0.1.g07306 I 0.755
GPUH_0000103801 Gongylonema pulchrum GPUH_0000103801 I 0.755
BTMF_0001180601 Brugia timori BTMF_0001180601 I 0.755
LOAG_16842 Loa loa LOAG_16842 I 0.755
EEL_0000192101 Elaeophora elaphi EEL_0000192101 I 0.755
WUBG_00356 Wuchereria bancrofti WUBG_00356 I 0.755
DME_0000391501 Dracunculus medinensis DME_0000391501 I 0.755
TCNE_0001577801 Toxocara canis TCNE_0001577801 I 0.753
NR1I3 Canis familiaris ENSCAFG00000012921 I 0.753
TCLT_0000569201 Thelazia callipaeda TCLT_0000569201 I 0.753
ASU_11275 Ascaris suum ASU_11275 I 0.753
NR1I3 Oryctolagus cuniculus ENSOCUG00000013537 I 0.750
THRA Echinops telfairi ENSETEG00000013166 I 0.749
thraa Danio rerio ENSDARG00000000151 I 0.749
DICVIV_05958 Dictyocaulus viviparus DICVIV_05958 I 0.747