CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Tal_R008756
(
Tyto alba
)
Nuclear receptor
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00105 (zf-C4)
IPR001628
Tal_R008756
T306935_2.00
GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
nr1h5.S
M11194_2.00
Xenopus laevis
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$FXRIR1_Q6
0.935
0.838
NR1H4
M00368_2.00
Homo sapiens
NVRGGTCANN
NNTGACCYBN
PBM
Barrera et al.(2016)
NR1H4_REF
0.910
0.779
NR1H4
M05876_2.00
Homo sapiens
DRGKTCAHHKD
HMDDTGAMCYH
SMiLE-seq
Isakova et al.(2017)
NR1H4
0.910
0.779
NR1H4
M08152_2.00
Homo sapiens
NNGGTCATTNN
NNAATGACCNN
ChIP-seq
Mathelier et al.(2014)
MA1110.1
0.910
0.779
NR1H4
M09263_2.00
Homo sapiens
CCBVNVGGYCRBTGMCCYB
VRGGKCAVYGRCCBNBVGG
Misc
Kulakovskiy et al.(2013)
NR1H4_HUMAN.H11MO.0.B
0.910
0.779
Nr1h4
M09332_2.00
Mus musculus
CCBVNVGGYCRBTGMCCYB
VRGGKCAVYGRCCBNBVGG
Misc
Kulakovskiy et al.(2013)
NR1H4_MOUSE.H11MO.0.A
0.910
0.779
Nr1h4
M09618_2.00
Mus musculus
NRGGBCANTGVCCY
RGGBCANTGVCCYN
Misc
Heinz et al.(2010)
Liver-FXR_Chong_et_al.
0.910
0.779
NR1H4
M11086_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$FXR_Q2
0.910
0.779
NR1H4
M11087_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$FXR_Q3
0.910
0.779
NR1H4
M11088_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$FXR_Q5
0.910
0.779
NR1H4
M11089_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$FXRRXR_Q5
0.910
0.779
NR1H4
M00367_2.00
Homo sapiens
NNNTWTTATDHNN
NNDHATAAWANNN
PBM
Barrera et al.(2016)
NR1H4_C144R
0.910
0.765
NR1H3
M09264_2.00
Homo sapiens
NHRRGGBHABHNNRGGNCA
TGNCCYNNDVTDVCCYYDN
Misc
Kulakovskiy et al.(2013)
NR1H3_HUMAN.H11MO.0.B
0.838
0.662
Nr1h3
M09301_2.00
Mus musculus
VDGDNCARAGKBCAN
NTGVMCTYTGNHCHB
Misc
Kulakovskiy et al.(2013)
NR1H3_MOUSE.H11MO.0.A
0.838
0.662
EcR
M06414_2.00
Drosophila melanogaster
RAGGTCAW
WTGACCTY
B1H
Zhu et al.(2011)
EcR_SANGER_5_FBgn0000546
0.826
0.721
Nr1h2
M09620_2.00
Mus musculus
RGGTYACTNNAGGTCA
TGACCTNNAGTRACCY
Misc
Heinz et al.(2010)
RAW-LXRb.biotin_GSE21512
0.777
0.588
For this family, TFs with SR scores >
0.745
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Tal_R008756
Nuclear receptor
98
166
ELCVVCGDKASGYHYNALTCEGCKGFFRRSITKNAVYRCKNGGHCEMDMYMRRKCQGXLKKCKAVGMLA
Links
Other
Nuclear receptor
family TFs
Other
Tyto alba
TFs
314 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy