e_gw.42.96.1 (Branchiostoma floridae)
Nuclear receptor

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00105 (zf-C4) IPR001628 e_gw.42.96.1 T306963_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Esr2
M01297_2.00
Mus musculus
NNRGGTCAH

DTGACCYNN
PBM
Lambert et al.(2019)
pTH3511
0.960 0.794
ESR2
M08154_2.00
Homo sapiens
RGGTCASNNWGNCCY

RGGNCWNNSTGACCY
ChIP-seq
Mathelier et al.(2014)
MA0258.2
0.960 0.794
ESR2
M09279_2.00
Homo sapiens
RGGKCRVRSYGMCCY

RGGKCRSYBYGMCCY
Misc
Kulakovskiy et al.(2013)
ESR2_HUMAN.H11MO.0.A
0.960 0.794
Esr2
M09311_2.00
Mus musculus
RGGKCRVRSYGMCCY

RGGKCRSYBYGMCCY
Misc
Kulakovskiy et al.(2013)
ESR2_MOUSE.H11MO.0.A
0.960 0.794
ESR2
M11146_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$ERBETA_Q5_01
0.960 0.794
ESR2
M11147_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$ERBETA_Q5
0.960 0.794
Esr1
M00813_2.00
Mus musculus
NRKGTCANNN

NNNTGACMYN
PBM
Weirauch et al.(2013)
pTH3510
0.959 0.779
ESR1
M03356_2.00
Homo sapiens
NRGGTCAMVRTGACCTK

MAGGTCAYBKTGACCYN
SELEX
Jolma et al.(2013)
ESR1_1
0.959 0.779
ESR1
M05569_2.00
Homo sapiens
NAGGTCAYSRTGACCTN

NAGGTCAYSRTGACCTN
SELEX
Yin et al.(2017)
ESR1_eDBD_HT-SELEX
0.959 0.779
ESR1
M05571_2.00
Homo sapiens
NRGGTCANSNTGACCYN

NRGGTCANSNTGACCYN
SELEX
Yin et al.(2017)
ESR1_FL_HT-SELEX
0.959 0.779
ESR1
M07985_2.00
Homo sapiens
DNBYMAAGGTCANN

NNTGACCTTKRVNH
ChIP-seq
Gerstein et al.(2012)
HepG2_ERRA_Stanford
0.959 0.779
ESR1
M08217_2.00
Homo sapiens
NHNRGGTCANNNTGNCCY

RGGNCANNNTGACCYNDN
ChIP-seq
Contrino et al.(2012)
Mv66
0.959 0.779
ESR1
M08218_2.00
Homo sapiens
CCAAGGTCAS

STGACCTTGG
ChIP-seq
Contrino et al.(2012)
Mv67
0.959 0.779
ESR1
M09267_2.00
Homo sapiens
RGGKCABMNTGMCCY

RGGKCANKVTGMCCY
Misc
Kulakovskiy et al.(2013)
ESR1_HUMAN.H11MO.0.A
0.959 0.779
Esr1
M09309_2.00
Mus musculus
RGGDCABKSTGWCCY

RGGWCASMVTGHCCY
Misc
Kulakovskiy et al.(2013)
ESR1_MOUSE.H11MO.0.A
0.959 0.779
ESR1
M09604_2.00
Homo sapiens
NRGGTCANNNTGACC

GGTCANNNTGACCYN
Misc
Heinz et al.(2010)
MCF7-ERa_Unpublished
0.959 0.779
ESR1
M11098_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$ERALPHA_01
0.959 0.779
ESR1
M11099_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$ERALPHA_Q4
0.959 0.779
ESR1
M11100_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$ERALPHA_Q6_01
0.959 0.779
ESR1
M11101_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$ERALPHA_Q6_02
0.959 0.779
ESR1
M11102_2.00
Homo sapiens
NHRGGTCAVNNHNNHYBNN

NNVRDNNDNNBTGACCYDN
Transfac
Matys et al.(2006)
V$ER_Q6
0.959 0.779
ESR1
M11103_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$ESR1_04
0.959 0.779
ESR1
M11104_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$ESR1_05
0.959 0.779
ESR1
M05570_2.00
Homo sapiens
NAGGTCAYSRYGACCTH

DAGGTCRYSRTGACCTN
SELEX
Yin et al.(2017)
ESR1_eDBD_Methyl-HT-SELEX
0.959 0.779
ESR1
M05572_2.00
Homo sapiens
NRGGTCANSBYGACCYN

NRGGTCRVSNTGACCYN
SELEX
Yin et al.(2017)
ESR1_FL_Methyl-HT-SELEX
0.959 0.779
Q6VU64_APLCA
M02423_2.00
Aplysia californica
NRGGTCAN

NTGACCYN
PBM
Weirauch et al.(2014)
pTH6055
0.946 0.765
Q969A9_BOMMO
M02410_2.00
Bombyx mori
VRGGTCDN

NHGACCYB
PBM
Weirauch et al.(2014)
pTH5516
0.867 0.559
svp
M06423_2.00
Drosophila melanogaster
ARGGTCA

TGACCYK
B1H
Zhu et al.(2011)
svp_SANGER_5_FBgn0003651
0.854 0.544
Hr78
M06430_2.00
Drosophila melanogaster
HVAGGTCA

TGACCTBD
B1H
Zhu et al.(2011)
Hr78_SANGER_5_FBgn0015239
0.833 0.544
O77476_BRUPA
M02422_2.00
Brugia pahangi
NRGGTCAN

NTGACCYN
PBM
Weirauch et al.(2014)
pTH6019
0.824 0.574
Nr1h2
M09620_2.00
Mus musculus
RGGTYACTNNAGGTCA

TGACCTNNAGTRACCY
Misc
Heinz et al.(2010)
RAW-LXRb.biotin_GSE21512
0.821 0.574
sex-1
M02416_2.00
Caenorhabditis elegans
RAGGTCAH

DTGACCTY
PBM
Weirauch et al.(2014)
pTH5667
0.816 0.588
Rora
M00819_2.00
Mus musculus
NNRGGTCA

TGACCYNN
PBM
Weirauch et al.(2013)
pTH3464
0.815 0.574
RORA
M03353_2.00
Homo sapiens
NMRAGGTCAAVYYVAGGTCA

TGACCTBRRBTTGACCTYKN
SELEX
Jolma et al.(2013)
RORA_1
0.815 0.574
RORA
M03354_2.00
Homo sapiens
WAWSTRGGTYASTAGGTCA

TGACCTASTRACCYASWTW
SELEX
Jolma et al.(2013)
RORA_2
0.815 0.574
RORA
M02705_2.00
Homo sapiens
WWVDAGGTCA

TGACCTHBWW
SELEX
Mathelier et al.(2014)
MA0071.1
0.815 0.574
RORA
M02706_2.00
Homo sapiens
NDWAWBTAGGTCAN

NTGACCTAVWTWHN
SELEX
Mathelier et al.(2014)
MA0072.1
0.815 0.574
RORA
M09265_2.00
Homo sapiens
VWNDRGGBCARDR

YHYTGVCCYHNWB
Misc
Kulakovskiy et al.(2013)
RORA_HUMAN.H11MO.0.C
0.815 0.574
Rora
M09327_2.00
Mus musculus
VWNDRGGBCARDR

YHYTGVCCYHNWB
Misc
Kulakovskiy et al.(2013)
RORA_MOUSE.H11MO.0.C
0.815 0.574
RORA
M11090_2.00
Homo sapiens
DWWWVDAGGTCAH

DTGACCTHBWWWH
Transfac
Matys et al.(2006)
V$RORA1_01
0.815 0.574
RORA
M11091_2.00
Homo sapiens
DWAWBTAGGTCAN

NTGACCTAVWTWH
Transfac
Matys et al.(2006)
V$RORA2_01
0.815 0.574
RORA
M11092_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$RORALPHA_Q4
0.815 0.574
RORA
M11093_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$RORA_Q4
0.815 0.574
CBG17178
M02392_2.00
Caenorhabditis briggsae
RAGGTCAH

DTGACCTY
PBM
Weirauch et al.(2014)
pTH6634
0.815 0.588
Nr2c1
M00812_2.00
Mus musculus
NRRGGTCANN

NNTGACCYYN
PBM
Weirauch et al.(2013)
pTH1284
0.812 0.515
Nr2c1
M02399_2.00
Mus musculus
RRGGTCAH

DTGACCYY
PBM
Weirauch et al.(2014)
pTH3466
0.812 0.515
NR2C1
M05597_2.00
Homo sapiens
NRGKKCRYGAMMYN

NRKKTCRYGMMCYN
SELEX
Yin et al.(2017)
NR2C1_eDBD_HT-SELEX_1
0.812 0.515
NR2C1
M05598_2.00
Homo sapiens
NRRGGTCAN

NTGACCYYN
SELEX
Yin et al.(2017)
NR2C1_eDBD_HT-SELEX_2
0.812 0.515
NR2C1
M09273_2.00
Homo sapiens
RBYVRVAGGTCAB

VTGACCTBYBRVY
Misc
Kulakovskiy et al.(2013)
NR2C1_HUMAN.H11MO.0.C
0.812 0.515
Nr2c1
M09304_2.00
Mus musculus
RBYVRVAGGTCAB

VTGACCTBYBRVY
Misc
Kulakovskiy et al.(2013)
NR2C1_MOUSE.H11MO.0.C
0.812 0.515
NR2C1
M05599_2.00
Homo sapiens
NRRGGTCAN

NTGACCYYN
SELEX
Yin et al.(2017)
NR2C1_eDBD_Methyl-HT-SELEX_1
0.812 0.515
NR2C1
M05600_2.00
Homo sapiens
RRGGTCRYGACCYY

RRGGTCRYGACCYY
SELEX
Yin et al.(2017)
NR2C1_eDBD_Methyl-HT-SELEX_2
0.812 0.515
RARG
M02397_2.00
Homo sapiens
VGGTCANN

NNTGACCB
PBM
Weirauch et al.(2014)
pTH5430
0.811 0.544
Rarg
M00810_2.00
Mus musculus
NNVGKTCANN

NNTGAMCBNN
PBM
Weirauch et al.(2013)
pTH4269
0.811 0.544
RARG
M03391_2.00
Homo sapiens
SRGGTCAAAAGGTCAVD

HBTGACCTTTTGACCYS
SELEX
Jolma et al.(2013)
RARG_1
0.811 0.544
RARG
M03392_2.00
Homo sapiens
RAGGTCAHVHWRAGGTCA

TGACCTYWDBDTGACCTY
SELEX
Jolma et al.(2013)
RARG_2
0.811 0.544
RARG
M03393_2.00
Homo sapiens
RRGGTCAHNNRAGGTCA

TGACCTYNNDTGACCYY
SELEX
Jolma et al.(2013)
RARG_3
0.811 0.544
RARG
M03394_2.00
Homo sapiens
GAGGTCAAAAGGTCAY

RTGACCTTTTGACCTC
SELEX
Jolma et al.(2013)
RARG_4
0.811 0.544
RARG
M03395_2.00
Homo sapiens
RAGGTCAABYARRGKTCA

TGAMCYYTRVTTGACCTY
SELEX
Jolma et al.(2013)
RARG_5
0.811 0.544
RARG
M03396_2.00
Homo sapiens
RAGGTCAHBNVRGGTCA

TGACCYBNVDTGACCTY
SELEX
Jolma et al.(2013)
RARG_6
0.811 0.544
Rarg
M03416_2.00
Mus musculus
RRGGTCAAAAGGTCAH

DTGACCTTTTGACCYY
SELEX
Jolma et al.(2013)
Rarg_1
0.811 0.544
Rarg
M03417_2.00
Mus musculus
RAGGTCAWVHAAAGGTCA

TGACCTTTDBWTGACCTY
SELEX
Jolma et al.(2013)
Rarg_2
0.811 0.544
Rarg
M03418_2.00
Mus musculus
AAGGTCAHSARAGGTCA

TGACCTYTSDTGACCTT
SELEX
Jolma et al.(2013)
Rarg_3
0.811 0.544
RARG
M05653_2.00
Homo sapiens
NRGGTCANV

BNTGACCYN
SELEX
Yin et al.(2017)
RARG_FL_HT-SELEX
0.811 0.544
RARG
M05649_2.00
Homo sapiens
DRGGTCAAAAGKTCAN

NTGAMCTTTTGACCYH
SELEX
Yin et al.(2017)
RARG_eDBD_HT-SELEX_1
0.811 0.544
RARG
M05650_2.00
Homo sapiens
RAGGTCATGACCTH

DAGGTCATGACCTY
SELEX
Yin et al.(2017)
RARG_eDBD_HT-SELEX_2
0.811 0.544
Rarg
M05885_2.00
Mus musculus
NRGGTCANDRGKKYA

TRMMCYHNTGACCYN
SMiLE-seq
Isakova et al.(2017)
RARg
0.811 0.544
RARG
M09289_2.00
Homo sapiens
RGGTCAVVVWGNMMNNDV

BHNNKKNCWBBBTGACCY
Misc
Kulakovskiy et al.(2013)
RARG_HUMAN.H11MO.0.B
0.811 0.544
Rarg
M09300_2.00
Mus musculus
RGGTCAVVVWGNMMNNDV

BHNNKKNCWBBBTGACCY
Misc
Kulakovskiy et al.(2013)
RARG_MOUSE.H11MO.0.C
0.811 0.544
Rarg
M09613_2.00
Mus musculus
RGKTCAAGGBCA

TGVCCTTGAMCY
Misc
Heinz et al.(2010)
ES-RARg_GSE30538
0.811 0.544
RARG
M11167_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$RARG_Q3
0.811 0.544
RARG
M05654_2.00
Homo sapiens
NRGGTCRNV

BNYGACCYN
SELEX
Yin et al.(2017)
RARG_FL_Methyl-HT-SELEX
0.811 0.544
RARG
M05651_2.00
Homo sapiens
DRGGTCAARRGGTCRN

NYGACCYYTTGACCYH
SELEX
Yin et al.(2017)
RARG_eDBD_Methyl-HT-SELEX_1
0.811 0.544
RARG
M05652_2.00
Homo sapiens
DAGKTCRYGACCYY

RRGGTCRYGAMCTH
SELEX
Yin et al.(2017)
RARG_eDBD_Methyl-HT-SELEX_2
0.811 0.544
nr2f2
M02393_2.00
Danio rerio
NNRGGTCAN

NTGACCYNN
PBM
Weirauch et al.(2014)
pTH5882
0.808 0.544
Nr2f1
M00822_2.00
Mus musculus
DRGGTCRN

NYGACCYH
PBM
Weirauch et al.(2013)
pTH3811
0.808 0.544
NR2F1
M03403_2.00
Homo sapiens
RRGGTCAAAGGTCAN

NTGACCTTTGACCYY
SELEX
Jolma et al.(2013)
NR2F1_1
0.808 0.544
NR2F1
M03404_2.00
Homo sapiens
RRGGTCAARAGGTCAN

NTGACCTYTTGACCYY
SELEX
Jolma et al.(2013)
NR2F1_2
0.808 0.544
NR2F1
M03405_2.00
Homo sapiens
RRGGTCAN

NTGACCYY
SELEX
Jolma et al.(2013)
NR2F1_3
0.808 0.544
NR2F1
M03406_2.00
Homo sapiens
NHRRGGTCANVNG

CNBNTGACCYYDN
SELEX
Jolma et al.(2013)
NR2F1_4
0.808 0.544
NR2F1
M05661_2.00
Homo sapiens
NRGGTCAAAGGTCRN

NYGACCTTTGACCYN
SELEX
Yin et al.(2017)
NR2F1_eDBD_HT-SELEX_1
0.808 0.544
NR2F1
M05662_2.00
Homo sapiens
VRGGTCANYGACCYY

RRGGTCRNTGACCYB
SELEX
Yin et al.(2017)
NR2F1_eDBD_HT-SELEX_2
0.808 0.544
NR2F1
M05665_2.00
Homo sapiens
VRGGTCAAAGGTCAN

NTGACCTTTGACCYB
SELEX
Yin et al.(2017)
NR2F1_FL_HT-SELEX_1
0.808 0.544
NR2F1
M05666_2.00
Homo sapiens
RRGGTCANYGACCYY

RRGGTCRNTGACCYY
SELEX
Yin et al.(2017)
NR2F1_FL_HT-SELEX_2
0.808 0.544
NR2F1
M09291_2.00
Homo sapiens
NRRRBSRRRGGKCANVN

NBNTGMCCYYYSVYYYN
Misc
Kulakovskiy et al.(2013)
COT1_HUMAN.H11MO.0.C
0.808 0.544
Nr2f1
M09334_2.00
Mus musculus
YARAGGTCA

TGACCTYTR
Misc
Kulakovskiy et al.(2013)
COT1_MOUSE.H11MO.0.B
0.808 0.544
NR2F1
M11172_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$COUPTF1_Q6_01
0.808 0.544
NR2F1
M05663_2.00
Homo sapiens
NRGGTCAAAGGTCRN

NYGACCTTTGACCYN
SELEX
Yin et al.(2017)
NR2F1_eDBD_Methyl-HT-SELEX_1
0.808 0.544
NR2F1
M05664_2.00
Homo sapiens
NRGGTCANYGACCYH

DRGGTCRNTGACCYN
SELEX
Yin et al.(2017)
NR2F1_eDBD_Methyl-HT-SELEX_2
0.808 0.544
NR2F1
M05667_2.00
Homo sapiens
NRGGTCAAAGGTCRN

NYGACCTTTGACCYN
SELEX
Yin et al.(2017)
NR2F1_FL_Methyl-HT-SELEX_1
0.808 0.544
NR2F1
M05668_2.00
Homo sapiens
RRGGTCRNYGACCYY

RRGGTCRNYGACCYY
SELEX
Yin et al.(2017)
NR2F1_FL_Methyl-HT-SELEX_2
0.808 0.544
NR2C2
M03407_2.00
Homo sapiens
VRGGTCAAAGGTCA

TGACCTTTGACCYB
SELEX
Jolma et al.(2013)
NR2C2_1
0.807 0.544
NR2C2
M05669_2.00
Homo sapiens
NRGGTCRN

NYGACCYN
SELEX
Yin et al.(2017)
NR2C2_eDBD_HT-SELEX
0.807 0.544
NR2C2
M08156_2.00
Homo sapiens
NVRGGTCARAGGKCA

TGMCCTYTGACCYBN
ChIP-seq
Mathelier et al.(2014)
MA0504.1
0.807 0.544
NR2C2
M07990_2.00
Homo sapiens
WBYRCTTCCGGGKYV

BRMCCCGGAAGYRVW
ChIP-seq
Gerstein et al.(2012)
HeLa-S3_TR4_UCD
0.807 0.544
NR2C2
M07991_2.00
Homo sapiens
DWBYRCTTCCGGGKY

RMCCCGGAAGYRVWH
ChIP-seq
Gerstein et al.(2012)
HepG2b_TR4_UCD
0.807 0.544
NR2C2
M07992_2.00
Homo sapiens
WBYRCTTCCGGGKYR

YRMCCCGGAAGYRVW
ChIP-seq
Gerstein et al.(2012)
K562b_TR4_UCD
0.807 0.544
NR2C2
M08221_2.00
Homo sapiens
DWBYDCTTCCGGGKY

RMCCCGGAAGHRVWH
ChIP-seq
Contrino et al.(2012)
Mv97
0.807 0.544
NR2C2
M08222_2.00
Homo sapiens
TCARAGGTCA

TGACCTYTGA
ChIP-seq
Contrino et al.(2012)
Mv98
0.807 0.544
NR2C2
M09292_2.00
Homo sapiens
RBTYMVRGGTCR

YGACCYBKRAVY
Misc
Kulakovskiy et al.(2013)
NR2C2_HUMAN.H11MO.0.B
0.807 0.544
Nr2c2
M09303_2.00
Mus musculus
RRGKSARAGGKCA

TGMCCTYTSMCYY
Misc
Kulakovskiy et al.(2013)
NR2C2_MOUSE.H11MO.0.A
0.807 0.544
NR2C2
M09611_2.00
Homo sapiens
RRGGTCARAGGTCA

TGACCTYTGACCYY
Misc
Heinz et al.(2010)
Hela-TR4_GSE24685
0.807 0.544
NR2C2
M11173_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$NR2C2_03
0.807 0.544
NR2C2
M11174_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$NR2C2_04
0.807 0.544
NR2C2
M11175_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TR4_01
0.807 0.544
NR2C2
M11176_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TR4_03
0.807 0.544
NR2C2
M11177_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TR4_Q2_01
0.807 0.544
NR2C2
M11178_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TR4_Q2
0.807 0.544
NR2C2
M11179_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TR4_Q3
0.807 0.544
NR2C2
M05670_2.00
Homo sapiens
NRGGTCRN

NYGACCYN
SELEX
Yin et al.(2017)
NR2C2_eDBD_Methyl-HT-SELEX
0.807 0.544
Rorb
M00820_2.00
Mus musculus
NRGGTCANN

NNTGACCYN
PBM
Weirauch et al.(2013)
pTH3469
0.804 0.544
rorb
M02404_2.00
Tetraodon nigroviridis
NGAGGTCANN

NNTGACCTCN
PBM
Weirauch et al.(2014)
pTH6589
0.804 0.544
RORB
M05677_2.00
Homo sapiens
DAWNTRGGTYAGTRGGTCAN

NTGACCYACTRACCYANWTH
SELEX
Yin et al.(2017)
RORB_eDBD_HT-SELEX_1
0.804 0.544
RORB
M05678_2.00
Homo sapiens
NAWNKRGGTCAYGACCYMNWTN

NAWNKRGGTCRTGACCYMNWTN
SELEX
Yin et al.(2017)
RORB_eDBD_HT-SELEX_2
0.804 0.544
RORB
M05883_2.00
Homo sapiens
AWNBRGGTCAN

NTGACCYVNWT
SMiLE-seq
Isakova et al.(2017)
RORb
0.804 0.544
RORB
M11187_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$RORBETA_Q2
0.804 0.544
RORB
M05679_2.00
Homo sapiens
DAWBTRGGTYAGTRGGTCRN

NYGACCYACTRACCYAVWTH
SELEX
Yin et al.(2017)
RORB_eDBD_Methyl-HT-SELEX_1
0.804 0.544
RORB
M05680_2.00
Homo sapiens
NAWNKRGGTCAYGACCYMNWTN

NAWNKRGGTCRTGACCYMNWTN
SELEX
Yin et al.(2017)
RORB_eDBD_Methyl-HT-SELEX_2
0.804 0.544
Rxra
M00181_2.00
Mus musculus
NRRGGTCANN

NNTGACCYYN
PBM
Badis et al.(2009)
Rxra_1035
0.803 0.544
RXRA
M03408_2.00
Homo sapiens
RRGGTCAAAGGTCA

TGACCTTTGACCYY
SELEX
Jolma et al.(2013)
RXRA_1
0.803 0.544
RXRA
M03409_2.00
Homo sapiens
RRGGTCATGACCYY

RRGGTCATGACCYY
SELEX
Jolma et al.(2013)
RXRA_2
0.803 0.544
RXRA
M03410_2.00
Homo sapiens
RRGGTCAAAGGTCA

TGACCTTTGACCYY
SELEX
Jolma et al.(2013)
RXRA_3
0.803 0.544
RXRA
M03411_2.00
Homo sapiens
RRGGTCATGACCYY

RRGGTCATGACCYY
SELEX
Jolma et al.(2013)
RXRA_4
0.803 0.544
Rxra
M03421_2.00
Mus musculus
RRGGTCAAAGGTCA

TGACCTTTGACCYY
SELEX
Jolma et al.(2013)
Rxra_1
0.803 0.544
Rxra
M03422_2.00
Mus musculus
RGGTCATGACCY

RGGTCATGACCY
SELEX
Jolma et al.(2013)
Rxra_2
0.803 0.544
RXRA
M05671_2.00
Homo sapiens
RRGGTCAAAGGTCAN

NTGACCTTTGACCYY
SELEX
Yin et al.(2017)
RXRA_eDBD_HT-SELEX
0.803 0.544
RXRA
M05882_2.00
Homo sapiens
VRGKTBAAAGGTYRH

DYRACCTTTVAMCYB
SMiLE-seq
Isakova et al.(2017)
RXRa
0.803 0.544
RXRA
M07993_2.00
Homo sapiens
NRRGGTCA

TGACCYYN
ChIP-seq
Gerstein et al.(2012)
H1-hESC_RXRA_HudsonAlpha
0.803 0.544
RXRA
M07994_2.00
Homo sapiens
DDNNMRRGGTCANDN

NHNTGACCYYKNNHH
ChIP-seq
Gerstein et al.(2012)
HepG2_RXRA_HudsonAlpha
0.803 0.544
RXRA
M09294_2.00
Homo sapiens
VDDDNDNNVRRRGGKCAVDV

BHBTGMCCYYYBNNHNHHHB
Misc
Kulakovskiy et al.(2013)
RXRA_HUMAN.H11MO.0.A
0.803 0.544
Rxra
M09306_2.00
Mus musculus
DDVNNNNNRAGKTCAAGGYCA

TGRCCTTGAMCTYNNNNNBHH
Misc
Kulakovskiy et al.(2013)
RXRA_MOUSE.H11MO.0.A
0.803 0.544
RXRA
M11182_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$RXRA_07
0.803 0.544
RXRA
M05672_2.00
Homo sapiens
RRGGTCAAAGGTCAH

DTGACCTTTGACCYY
SELEX
Yin et al.(2017)
RXRA_eDBD_Methyl-HT-SELEX
0.803 0.544
NR2F6
M02396_2.00
Homo sapiens
NNRGGTCR

YGACCYNN
PBM
Weirauch et al.(2014)
pTH6747
0.802 0.559
NR2F6
M03386_2.00
Homo sapiens
RRGGTCAAAAGGTCA

TGACCTTTTGACCYY
SELEX
Jolma et al.(2013)
NR2F6_1
0.802 0.559
NR2F6
M03387_2.00
Homo sapiens
RRGGTCAAAGGTCA

TGACCTTTGACCYY
SELEX
Jolma et al.(2013)
NR2F6_2
0.802 0.559
NR2F6
M03388_2.00
Homo sapiens
NRGGTCAAAGGTCA

TGACCTTTGACCYN
SELEX
Jolma et al.(2013)
NR2F6_3
0.802 0.559
NR2F6
M05641_2.00
Homo sapiens
RRGGTCAAAGGTCAN

NTGACCTTTGACCYY
SELEX
Yin et al.(2017)
NR2F6_eDBD_HT-SELEX_1
0.802 0.559
NR2F6
M05642_2.00
Homo sapiens
RAGGTCANTGACCTY

RAGGTCANTGACCTY
SELEX
Yin et al.(2017)
NR2F6_eDBD_HT-SELEX_2
0.802 0.559
NR2F6
M05645_2.00
Homo sapiens
NRGGTCARAGGTCRN

NYGACCTYTGACCYN
SELEX
Yin et al.(2017)
NR2F6_FL_HT-SELEX_1
0.802 0.559
NR2F6
M05646_2.00
Homo sapiens
NRGGTCANYGACCYY

RRGGTCRNTGACCYN
SELEX
Yin et al.(2017)
NR2F6_FL_HT-SELEX_2
0.802 0.559
NR2F6
M11153_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$EAR2_Q2
0.802 0.559
NR2F6
M11154_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$EAR2_Q4
0.802 0.559
NR2F6
M05643_2.00
Homo sapiens
RRGGTCAAAGGTCRN

NYGACCTTTGACCYY
SELEX
Yin et al.(2017)
NR2F6_eDBD_Methyl-HT-SELEX_1
0.802 0.559
NR2F6
M05644_2.00
Homo sapiens
RRGGTCRNYGACCYY

RRGGTCRNYGACCYY
SELEX
Yin et al.(2017)
NR2F6_eDBD_Methyl-HT-SELEX_2
0.802 0.559
NR2F6
M05647_2.00
Homo sapiens
NRGGTYADRGGKBRN

NYVMCCYHTRACCYN
SELEX
Yin et al.(2017)
NR2F6_FL_Methyl-HT-SELEX_1
0.802 0.559
NR2F6
M05648_2.00
Homo sapiens
NRGGTCANYGACCYN

NRGGTCRNTGACCYN
SELEX
Yin et al.(2017)
NR2F6_FL_Methyl-HT-SELEX_2
0.802 0.559
Rxrb
M02402_2.00
Mus musculus
VRGGTCAH

DTGACCYB
PBM
Weirauch et al.(2014)
pTH2861
0.799 0.559
RXRB
M03415_2.00
Homo sapiens
RRGGTCAAAGGTCA

TGACCTTTGACCYY
SELEX
Jolma et al.(2013)
RXRB_1
0.799 0.559
Rxrb
M03435_2.00
Mus musculus
GRGGTCAAAGGTCA

TGACCTTTGACCYC
SELEX
Jolma et al.(2013)
Rxrb_1
0.799 0.559
RXRB
M05681_2.00
Homo sapiens
RRGGTCAAAGGTCAN

NTGACCTTTGACCYY
SELEX
Yin et al.(2017)
RXRB_eDBD_HT-SELEX_1
0.799 0.559
RXRB
M05682_2.00
Homo sapiens
RRGGTCAYGACCYY

RRGGTCRTGACCYY
SELEX
Yin et al.(2017)
RXRB_eDBD_HT-SELEX_2
0.799 0.559
RXRB
M09297_2.00
Homo sapiens
DSAGGTCASD

HSTGACCTSH
Misc
Kulakovskiy et al.(2013)
RXRB_HUMAN.H11MO.0.C
0.799 0.559
Rxrb
M09330_2.00
Mus musculus
DSAGGTCASD

HSTGACCTSH
Misc
Kulakovskiy et al.(2013)
RXRB_MOUSE.H11MO.0.C
0.799 0.559
RXRB
M05683_2.00
Homo sapiens
RRGGTCAAAGGTCRN

NYGACCTTTGACCYY
SELEX
Yin et al.(2017)
RXRB_eDBD_Methyl-HT-SELEX_1
0.799 0.559
RXRB
M05684_2.00
Homo sapiens
RRGGTCRYGACCYY

RRGGTCRYGACCYY
SELEX
Yin et al.(2017)
RXRB_eDBD_Methyl-HT-SELEX_2
0.799 0.559
Nr2f2
M00184_2.00
Mus musculus
RRGGTCAN

NTGACCYY
PBM
Badis et al.(2009)
Nr2f2_2192
0.796 0.529
NR2F2
M08157_2.00
Homo sapiens
NNAAGGTCANN

NNTGACCTTNN
ChIP-seq
Mathelier et al.(2014)
MA1111.1
0.796 0.529
NR2F2
M08223_2.00
Homo sapiens
AAAGGTCA

TGACCTTT
ChIP-seq
Contrino et al.(2012)
Mv102
0.796 0.529
NR2F2
M08224_2.00
Homo sapiens
GGKCARAGGB

VCCTYTGMCC
ChIP-seq
Contrino et al.(2012)
Mv104
0.796 0.529
NR2F2
M09293_2.00
Homo sapiens
NARRGGTCADRDN

NHYHTGACCYYTN
Misc
Kulakovskiy et al.(2013)
COT2_HUMAN.H11MO.0.A
0.796 0.529
Nr2f2
M09325_2.00
Mus musculus
NNHRAGGTCANVD

HBNTGACCTYDNN
Misc
Kulakovskiy et al.(2013)
COT2_MOUSE.H11MO.0.A
0.796 0.529
NR2F2
M11180_2.00
Homo sapiens
WRRKKTCAARGGYTCA

TGARCCYTTGAMMYYW
Transfac
Matys et al.(2006)
V$ARP1_01
0.796 0.529
NR2F2
M11181_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$COUPTF2_Q6
0.796 0.529
Rorc
M09324_2.00
Mus musculus
NDAWSTRRGTCA

TGACYYASWTHN
Misc
Kulakovskiy et al.(2013)
RORG_MOUSE.H11MO.0.B
0.794 0.529
Rorc
M09617_2.00
Mus musculus
AWBTRGGTCA

TGACCYAVWT
Misc
Heinz et al.(2010)
EL4-RORgt.Flag_GSE56019
0.794 0.529
usp
M03934_2.00
Drosophila melanogaster
ARRGGTCAAAGGTCA

TGACCTTTGACCYYT
SELEX
Nitta et al.(2015)
usp_1
0.794 0.559
usp
M06426_2.00
Drosophila melanogaster
HRRGGTCAH

DTGACCYYD
B1H
Zhu et al.(2011)
usp_SANGER_5_FBgn0003964
0.794 0.559
usp
M02709_2.00
Drosophila melanogaster
GGGGTCACSN

NSGTGACCCC
SELEX
Mathelier et al.(2014)
MA0016.1
0.794 0.559
usp
M09689_2.00
Drosophila melanogaster
KRGGTCACG

CGTGACCYM
Misc
Kulakovskiy et al.(2009)
usp
0.794 0.559
usp
M11191_2.00
Drosophila melanogaster
GRGGTCAYS

SRTGACCYC
Transfac
Matys et al.(2006)
I$CF1_01
0.794 0.559
usp
M11192_2.00
Drosophila melanogaster
GGGGTCAYS

SRTGACCCC
Transfac
Matys et al.(2006)
I$CF1_02
0.794 0.559
Eip78C
M06427_2.00
Drosophila melanogaster
RGGTCA

TGACCY
B1H
Zhu et al.(2011)
Eip78C_SANGER_5_FBgn0004865
0.789 0.559
Rxrg
M02400_2.00
Mus musculus
VRGGTCAN

NTGACCYB
PBM
Weirauch et al.(2014)
pTH2880
0.785 0.544
RXRG
M03375_2.00
Homo sapiens
RRGGTCAAAGGTCA

TGACCTTTGACCYY
SELEX
Jolma et al.(2013)
RXRG_1
0.785 0.544
RXRG
M03376_2.00
Homo sapiens
RRGGTCATGACCYY

RRGGTCATGACCYY
SELEX
Jolma et al.(2013)
RXRG_2
0.785 0.544
RXRG
M03377_2.00
Homo sapiens
GRGGTCAAAGGTCA

TGACCTTTGACCYC
SELEX
Jolma et al.(2013)
RXRG_3
0.785 0.544
RXRG
M03378_2.00
Homo sapiens
NRGGTCATGACCYC

GRGGTCATGACCYN
SELEX
Jolma et al.(2013)
RXRG_4
0.785 0.544
RXRG
M02746_2.00
Homo sapiens
GGTCAAAGGTCA

TGACCTTTGACC
SELEX
Jolma et al.(2010)
RXRG_dimer
0.785 0.544
RXRG
M05615_2.00
Homo sapiens
VRGGTCAAAGGTCAN

NTGACCTTTGACCYB
SELEX
Yin et al.(2017)
RXRG_FL_HT-SELEX_1
0.785 0.544
RXRG
M05616_2.00
Homo sapiens
RRGGTCAYGACCYY

RRGGTCRTGACCYY
SELEX
Yin et al.(2017)
RXRG_FL_HT-SELEX_2
0.785 0.544
RXRG
M05879_2.00
Homo sapiens
RGGTBAARGGTBRND

HNYVACCYTTVACCY
SMiLE-seq
Isakova et al.(2017)
RXRg
0.785 0.544
RXRG
M09280_2.00
Homo sapiens
NGTCAAAGGTCAH

DTGACCTTTGACN
Misc
Kulakovskiy et al.(2013)
RXRG_HUMAN.H11MO.0.B
0.785 0.544
Rxrg
M09305_2.00
Mus musculus
VDDVDNSVNRAGKTCAAGGYCA

TGRCCTTGAMCTYNBSNHBHHB
Misc
Kulakovskiy et al.(2013)
RXRG_MOUSE.H11MO.0.B
0.785 0.544
RXRG
M05617_2.00
Homo sapiens
DRGGTBAARGGTBRN

NYVACCYTTVACCYH
SELEX
Yin et al.(2017)
RXRG_FL_Methyl-HT-SELEX_1
0.785 0.544
RXRG
M05618_2.00
Homo sapiens
VRGGTCAYGACCYB

VRGGTCRTGACCYB
SELEX
Yin et al.(2017)
RXRG_FL_Methyl-HT-SELEX_2
0.785 0.544
Rara
M00185_2.00
Mus musculus
NRGGTCAN

NTGACCYN
PBM
Badis et al.(2009)
Rara_1051
0.777 0.529
RARA
M03369_2.00
Homo sapiens
RRAGGTCAWBWRRGGTCA

TGACCYYWVWTGACCTYY
SELEX
Jolma et al.(2013)
RARA_1
0.777 0.529
RARA
M03370_2.00
Homo sapiens
RAGGTCAAAAGGTCAWKB

VMWTGACCTTTTGACCTY
SELEX
Jolma et al.(2013)
RARA_2
0.777 0.529
RARA
M03371_2.00
Homo sapiens
AGGTCAHNYWRAGGTCA

TGACCTYWRNDTGACCT
SELEX
Jolma et al.(2013)
RARA_3
0.777 0.529
RARA
M03372_2.00
Homo sapiens
ARGGTCAAAAGGTCA

TGACCTTTTGACCYT
SELEX
Jolma et al.(2013)
RARA_4
0.777 0.529
RARA
M03373_2.00
Homo sapiens
WRRGGTCAHSHRRGGTCA

TGACCYYDSDTGACCYYW
SELEX
Jolma et al.(2013)
RARA_5
0.777 0.529
RARA
M03374_2.00
Homo sapiens
AGGTCAWNNARAGGTCA

TGACCTYTNNWTGACCT
SELEX
Jolma et al.(2013)
RARA_6
0.777 0.529
Rara
M03432_2.00
Mus musculus
AAAGGTCAHBVRAGGTCA

TGACCTYBVDTGACCTTT
SELEX
Jolma et al.(2013)
Rara_1
0.777 0.529
Rara
M03433_2.00
Mus musculus
AGGTCAHNHAAAGGTCA

TGACCTTTDNDTGACCT
SELEX
Jolma et al.(2013)
Rara_2
0.777 0.529
Rara
M03434_2.00
Mus musculus
RAGGTCAAAAGGTCA

TGACCTTTTGACCTY
SELEX
Jolma et al.(2013)
Rara_3
0.777 0.529
RARA
M05607_2.00
Homo sapiens
NVGGKCANNRGGKCAN

NTGMCCYNNTGMCCBN
SELEX
Yin et al.(2017)
RARA_eDBD_HT-SELEX_1
0.777 0.529
RARA
M05608_2.00
Homo sapiens
NVGGKCAYGNCCBN

NVGGNCRTGMCCBN
SELEX
Yin et al.(2017)
RARA_eDBD_HT-SELEX_2
0.777 0.529
RARA
M05609_2.00
Homo sapiens
NRRGGTCANV

BNTGACCYYN
SELEX
Yin et al.(2017)
RARA_eDBD_HT-SELEX_3
0.777 0.529
RARA
M05878_2.00
Homo sapiens
RAGGTCA

TGACCTY
SMiLE-seq
Isakova et al.(2017)
RARa
0.777 0.529
RARA
M09277_2.00
Homo sapiens
RRRDVDBSNDRAGKTCARGG

CCYTGAMCTYHNSVHBHYYY
Misc
Kulakovskiy et al.(2013)
RARA_HUMAN.H11MO.0.A
0.777 0.529
Rara
M09329_2.00
Mus musculus
RGRTCRDRAGKTCAAGGTCA

TGACCTTGAMCTYHYGAYCY
Misc
Kulakovskiy et al.(2013)
RARA_MOUSE.H11MO.0.A
0.777 0.529
RARA
M11137_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$NR1B1_Q6
0.777 0.529
RARA
M05610_2.00
Homo sapiens
DRGGKCRNDRGGTCRN

NYGACCYHNYGMCCYH
SELEX
Yin et al.(2017)
RARA_eDBD_Methyl-HT-SELEX_1
0.777 0.529
RARA
M05611_2.00
Homo sapiens
NVGGTCAYGMCCYN

NRGGKCRTGACCBN
SELEX
Yin et al.(2017)
RARA_eDBD_Methyl-HT-SELEX_2
0.777 0.529
RARA
M05612_2.00
Homo sapiens
NRAGGTCANN

NNTGACCTYN
SELEX
Yin et al.(2017)
RARA_eDBD_Methyl-HT-SELEX_3
0.777 0.529
RORC
M05621_2.00
Homo sapiens
KRGGTCAYGMCCYM

KRGGKCRTGACCYM
SELEX
Yin et al.(2017)
RORC_eDBD_HT-SELEX_1
0.776 0.515
RORC
M05622_2.00
Homo sapiens
NAWNKRGGTYANTRGGTCAN

NTGACCYANTRACCYMNWTN
SELEX
Yin et al.(2017)
RORC_eDBD_HT-SELEX_2
0.776 0.515
RORC
M05880_2.00
Homo sapiens
NDAWNTRGGKCA

TGMCCYANWTHN
SMiLE-seq
Isakova et al.(2017)
RORc
0.776 0.515
RORC
M09282_2.00
Homo sapiens
NDAWSTRRGTCA

TGACYYASWTHN
Misc
Kulakovskiy et al.(2013)
RORG_HUMAN.H11MO.0.C
0.776 0.515
RORC
M05623_2.00
Homo sapiens
TRGGTCAYGACCYA

TRGGTCRTGACCYA
SELEX
Yin et al.(2017)
RORC_eDBD_Methyl-HT-SELEX_1
0.776 0.515
RORC
M05624_2.00
Homo sapiens
NAWNTRGGTYASTAGGTCAN

NTGACCTASTRACCYANWTN
SELEX
Yin et al.(2017)
RORC_eDBD_Methyl-HT-SELEX_2
0.776 0.515
Smp_105090
M02412_2.00
Schistosoma mansoni
RGGTCANN

NNTGACCY
PBM
Weirauch et al.(2014)
pTH6174
0.776 0.559
Eip75B
M03928_2.00
Drosophila melanogaster
MWVTAGGTCANN

NNTGACCTABWK
SELEX
Nitta et al.(2015)
Eip75B_1
0.774 0.632
Eip75B
M03929_2.00
Drosophila melanogaster
AWNTRGGTCANTRGGTCA

TGACCYANTGACCYANWT
SELEX
Nitta et al.(2015)
Eip75B_2
0.774 0.632
Eip75B
M06416_2.00
Drosophila melanogaster
KWWNTRGGTCA

TGACCYANWWM
B1H
Zhu et al.(2011)
Eip75B_SANGER_5_FBgn0000568
0.774 0.632
Rarb
M02401_2.00
Mus musculus
NRRGGTCAHN

NDTGACCYYN
PBM
Weirauch et al.(2014)
pTH2804
0.774 0.529
RARB
M03355_2.00
Homo sapiens
AAAGGTCAARAGGTCA

TGACCTYTTGACCTTT
SELEX
Jolma et al.(2013)
RARB_1
0.774 0.529
Rarb
M03423_2.00
Mus musculus
WAAGGTCAAAAGGTCA

TGACCTTTTGACCTTW
SELEX
Jolma et al.(2013)
Rarb_1
0.774 0.529
Rarb
M03424_2.00
Mus musculus
RRAGGTCANBWRAGGTCA

TGACCTYWVNTGACCTYY
SELEX
Jolma et al.(2013)
Rarb_2
0.774 0.529
Rarb
M03425_2.00
Mus musculus
AGGTCAHVBWRAGGTCA

TGACCTYWVBDTGACCT
SELEX
Jolma et al.(2013)
Rarb_3
0.774 0.529
RARB
M05563_2.00
Homo sapiens
NHAAGGTCAN

NTGACCTTDN
SELEX
Yin et al.(2017)
RARB_FL_HT-SELEX_1
0.774 0.529
RARB
M05564_2.00
Homo sapiens
RRGGTCAARRGGTCAN

NTGACCYYTTGACCYY
SELEX
Yin et al.(2017)
RARB_FL_HT-SELEX_2
0.774 0.529
RARB
M05565_2.00
Homo sapiens
DAGGTCAYGACCYY

RRGGTCRTGACCTH
SELEX
Yin et al.(2017)
RARB_FL_HT-SELEX_3
0.774 0.529
RARB
M11094_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$NR1B2_Q6
0.774 0.529
RARB
M05566_2.00
Homo sapiens
NHRAGGTCAH

DTGACCTYDN
SELEX
Yin et al.(2017)
RARB_FL_Methyl-HT-SELEX_1
0.774 0.529
RARB
M05567_2.00
Homo sapiens
RRGGTCAHRRGGTCAN

NTGACCYYDTGACCYY
SELEX
Yin et al.(2017)
RARB_FL_Methyl-HT-SELEX_2
0.774 0.529
RARB
M05568_2.00
Homo sapiens
RRGGTCAYGACCYY

RRGGTCRTGACCYY
SELEX
Yin et al.(2017)
RARB_FL_Methyl-HT-SELEX_3
0.774 0.529
ERR
M03941_2.00
Drosophila melanogaster
BSAAGGTCRH

DYGACCTTSV
SELEX
Nitta et al.(2015)
ERR_1
0.770 0.662
ERR
M06433_2.00
Drosophila melanogaster
MAAGGTCA

TGACCTTK
B1H
Zhu et al.(2011)
ERR_SANGER_5_FBgn0035849
0.770 0.662
Esrrg
M00817_2.00
Mus musculus
VAAGGTCA

TGACCTTB
PBM
Weirauch et al.(2013)
pTH3841
0.769 0.691
ESRRB
M03367_2.00
Homo sapiens
TCAAGGTCAWH

DWTGACCTTGA
SELEX
Jolma et al.(2013)
ESRRB_1
0.769 0.691
ESRRG
M03412_2.00
Homo sapiens
AAGGTCAHNYSAAGGTCA

TGACCTTSRNDTGACCTT
SELEX
Jolma et al.(2013)
ESRRG_1
0.769 0.691
ESRRG
M03413_2.00
Homo sapiens
AAGGTCANHCAAGGTCA

TGACCTTGDNTGACCTT
SELEX
Jolma et al.(2013)
ESRRG_2
0.769 0.691
ESRRG
M03414_2.00
Homo sapiens
YSAAGGTCAH

DTGACCTTSR
SELEX
Jolma et al.(2013)
ESRRG_3
0.769 0.691
ESRRB
M05595_2.00
Homo sapiens
BBSAAGGTCRH

DYGACCTTSVV
SELEX
Yin et al.(2017)
ESRRB_eDBD_HT-SELEX
0.769 0.691
ESRRG
M05673_2.00
Homo sapiens
NNSAAGGTCRN

NYGACCTTSNN
SELEX
Yin et al.(2017)
ESRRG_eDBD_HT-SELEX
0.769 0.691
ESRRG
M05675_2.00
Homo sapiens
NNSAAGGTCRN

NYGACCTTSNN
SELEX
Yin et al.(2017)
ESRRG_FL_HT-SELEX
0.769 0.691
Esrrb
M08034_2.00
Mus musculus
NNBYCAAGGTCANNB

VNNTGACCTTGRVNN
ChIP-seq
Chen et al.(2011)
SRP000217_Esrrb
0.769 0.691
ESRRB
M09272_2.00
Homo sapiens
BCAAGGTCA

TGACCTTGV
Misc
Kulakovskiy et al.(2013)
ERR2_HUMAN.H11MO.0.A
0.769 0.691
ESRRG
M09296_2.00
Homo sapiens
TCAAGGTCA

TGACCTTGA
Misc
Kulakovskiy et al.(2013)
ERR3_HUMAN.H11MO.0.B
0.769 0.691
Esrrb
M09312_2.00
Mus musculus
NHDBTCAAGGTCANNBN

NVNNTGACCTTGAVHDN
Misc
Kulakovskiy et al.(2013)
ERR2_MOUSE.H11MO.0.A
0.769 0.691
Esrrg
M09321_2.00
Mus musculus
BSAAGGWCAB

VTGWCCTTSV
Misc
Kulakovskiy et al.(2013)
ERR3_MOUSE.H11MO.0.C
0.769 0.691
ESRRB
M11129_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$ERR2_01
0.769 0.691
ESRRB
M11130_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$ERR2_Q2
0.769 0.691
ESRRB
M11131_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$ERR2_Q3
0.769 0.691
ESRRG
M11185_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$ERR3_Q2_01
0.769 0.691
ESRRG
M11186_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$ERR3_Q2
0.769 0.691
ESRRB
M05596_2.00
Homo sapiens
NNSAAGGTCRH

DYGACCTTSNN
SELEX
Yin et al.(2017)
ESRRB_eDBD_Methyl-HT-SELEX
0.769 0.691
ESRRG
M05674_2.00
Homo sapiens
NNSAAGGTCRN

NYGACCTTSNN
SELEX
Yin et al.(2017)
ESRRG_eDBD_Methyl-HT-SELEX
0.769 0.691
ESRRG
M05676_2.00
Homo sapiens
NNSAAGGTCRN

NYGACCTTSNN
SELEX
Yin et al.(2017)
ESRRG_FL_Methyl-HT-SELEX
0.769 0.691
Nr1h3
M09301_2.00
Mus musculus
VDGDNCARAGKBCAN

NTGVMCTYTGNHCHB
Misc
Kulakovskiy et al.(2013)
NR1H3_MOUSE.H11MO.0.A
0.769 0.544
NR1H3
M09264_2.00
Homo sapiens
NHRRGGBHABHNNRGGNCA

TGNCCYNNDVTDVCCYYDN
Misc
Kulakovskiy et al.(2013)
NR1H3_HUMAN.H11MO.0.B
0.765 0.559
NR1H4
M00368_2.00
Homo sapiens
NVRGGTCANN

NNTGACCYBN
PBM
Barrera et al.(2016)
NR1H4_REF
0.765 0.500
NR1H4
M05876_2.00
Homo sapiens
DRGKTCAHHKD

HMDDTGAMCYH
SMiLE-seq
Isakova et al.(2017)
NR1H4
0.765 0.500
NR1H4
M08152_2.00
Homo sapiens
NNGGTCATTNN

NNAATGACCNN
ChIP-seq
Mathelier et al.(2014)
MA1110.1
0.765 0.500
NR1H4
M09263_2.00
Homo sapiens
CCBVNVGGYCRBTGMCCYB

VRGGKCAVYGRCCBNBVGG
Misc
Kulakovskiy et al.(2013)
NR1H4_HUMAN.H11MO.0.B
0.765 0.500
Nr1h4
M09332_2.00
Mus musculus
CCBVNVGGYCRBTGMCCYB

VRGGKCAVYGRCCBNBVGG
Misc
Kulakovskiy et al.(2013)
NR1H4_MOUSE.H11MO.0.A
0.765 0.500
Nr1h4
M09618_2.00
Mus musculus
NRGGBCANTGVCCY

RGGBCANTGVCCYN
Misc
Heinz et al.(2010)
Liver-FXR_Chong_et_al.
0.765 0.500
NR1H4
M11086_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$FXR_Q2
0.765 0.500
NR1H4
M11087_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$FXR_Q3
0.765 0.500
NR1H4
M11088_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$FXR_Q5
0.765 0.500
NR1H4
M11089_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$FXRRXR_Q5
0.765 0.500
NR1H4
M00367_2.00
Homo sapiens
NNNTWTTATDHNN

NNDHATAAWANNN
PBM
Barrera et al.(2016)
NR1H4_C144R
0.765 0.485
AAEL009588
M02388_2.00
Aedes aegypti
NRGGTCR

YGACCYN
PBM
Weirauch et al.(2014)
pTH5508
0.749 0.544
Hr46
M02406_2.00
Drosophila melanogaster
NRGGTCAN

NTGACCYN
PBM
Weirauch et al.(2014)
pTH6142
0.749 0.544
Hr46
M03926_2.00
Drosophila melanogaster
RGGTCAGTRGGTCA

TGACCYACTGACCY
SELEX
Nitta et al.(2015)
Hr46_1
0.749 0.544
Hr46
M06412_2.00
Drosophila melanogaster
AWKTGGGTYW

WRACCCAMWT
B1H
Zhu et al.(2011)
Hr46_FlyReg_FBgn0000448
0.749 0.544
Hr46
M06413_2.00
Drosophila melanogaster
HWNBAGGTCA

TGACCTVNWD
B1H
Zhu et al.(2011)
Hr46_SANGER_5_FBgn0000448
0.749 0.544
Esrra
M00183_2.00
Mus musculus
VAAGGTCAH

DTGACCTTB
PBM
Badis et al.(2009)
Esrra_2190
0.748 0.662
ESRRA
M03397_2.00
Homo sapiens
NYSAAGGTCAH

DTGACCTTSRN
SELEX
Jolma et al.(2013)
ESRRA_1
0.748 0.662
ESRRA
M03398_2.00
Homo sapiens
AAGGTCAWHCAAGGTCA

TGACCTTGDWTGACCTT
SELEX
Jolma et al.(2013)
ESRRA_2
0.748 0.662
ESRRA
M03399_2.00
Homo sapiens
SAAGGTCAHNYSAAGGTCA

TGACCTTSRNDTGACCTTS
SELEX
Jolma et al.(2013)
ESRRA_3
0.748 0.662
ESRRA
M03400_2.00
Homo sapiens
NYSAAGGTCAH

DTGACCTTSRN
SELEX
Jolma et al.(2013)
ESRRA_4
0.748 0.662
ESRRA
M03401_2.00
Homo sapiens
RAGGTCABNCAAGGTCA

TGACCTTGNVTGACCTY
SELEX
Jolma et al.(2013)
ESRRA_5
0.748 0.662
ESRRA
M03402_2.00
Homo sapiens
VAAGGTCAHNYSAAGGTCA

TGACCTTSRNDTGACCTTB
SELEX
Jolma et al.(2013)
ESRRA_6
0.748 0.662
Esrra
M03430_2.00
Mus musculus
DAGGTYAKTMAAGGTCA

TGACCTTKAMTRACCTH
SELEX
Jolma et al.(2013)
Esrra_1
0.748 0.662
Esrra
M03431_2.00
Mus musculus
KTCAAGGTCAT

ATGACCTTGAM
SELEX
Jolma et al.(2013)
Esrra_2
0.748 0.662
ESRRA
M05655_2.00
Homo sapiens
NNSAAGGTCAN

NTGACCTTSNN
SELEX
Yin et al.(2017)
ESRRA_eDBD_HT-SELEX
0.748 0.662
ESRRA
M05657_2.00
Homo sapiens
NNSAAGGTCAH

DTGACCTTSNN
SELEX
Yin et al.(2017)
ESRRA_FL_HT-SELEX
0.748 0.662
ESRRA
M07988_2.00
Homo sapiens
RGGKCASMNTGMCCY

RGGKCANKSTGMCCY
ChIP-seq
Gerstein et al.(2012)
ECC-1_ERALPHA_HudsonAlpha
0.748 0.662
ESRRA
M07989_2.00
Homo sapiens
NNRGGTCABNNTGHCCYNN

NNRGGDCANNVTGACCYNN
ChIP-seq
Gerstein et al.(2012)
T-47D_ERALPHA_HudsonAlpha
0.748 0.662
ESRRA
M09290_2.00
Homo sapiens
BYSAAGGTCANNNNN

NNNNNTGACCTTSRV
Misc
Kulakovskiy et al.(2013)
ERR1_HUMAN.H11MO.0.A
0.748 0.662
Esrra
M09319_2.00
Mus musculus
NNBYCAAGGTCA

TGACCTTGRVNN
Misc
Kulakovskiy et al.(2013)
ERR1_MOUSE.H11MO.0.A
0.748 0.662
ESRRA
M11168_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$ERR1_Q2_01
0.748 0.662
ESRRA
M11169_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$ERR1_Q2
0.748 0.662
ESRRA
M11170_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$ERR1_Q3
0.748 0.662
ESRRA
M11171_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$ESRRA_10
0.748 0.662
ESRRA
M05656_2.00
Homo sapiens
NNSAAGGTCRN

NYGACCTTSNN
SELEX
Yin et al.(2017)
ESRRA_eDBD_Methyl-HT-SELEX
0.748 0.662
ESRRA
M05658_2.00
Homo sapiens
NBSAAGGTCRH

DYGACCTTSVN
SELEX
Yin et al.(2017)
ESRRA_FL_Methyl-HT-SELEX
0.748 0.662
RORC
M02405_2.00
Tetraodon nigroviridis
NGAGGTCANN

NNTGACCTCN
PBM
Weirauch et al.(2014)
pTH6612
0.746 0.515
tll
M02408_2.00
Drosophila melanogaster
NRASGTCAANNN

NNNTTGACSTYN
PBM
Weirauch et al.(2014)
pTH5714
0.745 0.529
tll
M03932_2.00
Drosophila melanogaster
NRAGTCAAAAGTCA

TGACTTTTGACTYN
SELEX
Nitta et al.(2015)
tll_1
0.745 0.529
tll
M03933_2.00
Drosophila melanogaster
NRAGTCAADAAGTCA

TGACTTHTTGACTYN
SELEX
Nitta et al.(2015)
tll_2
0.745 0.529
tll
M06558_2.00
Drosophila melanogaster
WAAAGTCAAM

KTTGACTTTW
B1H
Mathelier et al.(2014)
MA0459.1
0.745 0.529
tll
M06424_2.00
Drosophila melanogaster
AAAGTYA

TRACTTT
B1H
Zhu et al.(2011)
tll_FlyReg_FBgn0003720
0.745 0.529
tll
M06425_2.00
Drosophila melanogaster
WAAAGTCAAM

KTTGACTTTW
B1H
Zhu et al.(2011)
tll_NAR_FBgn0003720
0.745 0.529
tll
M09688_2.00
Drosophila melanogaster
MAAAGTCAAH

DTTGACTTTK
Misc
Kulakovskiy et al.(2009)
tll
0.745 0.529
tll
M11190_2.00
Drosophila melanogaster Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
I$TLL_Q6
0.745 0.529
For this family, TFs with SR scores > 0.745 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
e_gw.42.96.1 Nuclear receptor 1 69

Links

Other Nuclear receptor family TFs
Other Branchiostoma floridae TFs

2215 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
A1O1_07021 Capronia coronata A1O1_07021 N 0.000
A1O3_04345 Capronia epimyces A1O3_04345 N 0.000
A1O5_10244 Cladophialophora psammophila A1O5_10244 N 0.000
A1O7_02026 Cladophialophora yegresii A1O7_02026 N 0.000
A1O9_06714 Exophiala aquamarina A1O9_06714 N 0.000
A1O9_11919 Exophiala aquamarina A1O9_11919 N 0.000
AB00151.1 Alternaria brassicicola AB00151.1 N 0.000
ACRE_066780 Acremonium chrysogenum ACRE_066780 N 0.000
ANIA_04527 Aspergillus nidulans CADANIAG00005913 N 0.000
AOL_s00080g134 Arthrobotrys oligospora AOL_s00080g134 N 0.000
AUEXF2481DRAFT_3955 Aureobasidium subglaciale AUEXF2481DRAFT_3955 N 0.000
BAUCODRAFT_30306 Baudoinia compniacensis BAUCODRAFT_30306 N 0.000
BBA_07468 Beauveria bassiana BBA_07468 N 0.000
Bcin13g03650 Botrytis cinerea Bcin13g03650 N 0.000
BDDG_01950 Blastomyces dermatitidis BDDG_01950 N 0.000
CADAFLAG00007185 Aspergillus flavus CADAFLAG00007185 N 0.000
CADANGAG00006010 Aspergillus niger CADANGAG00006010 N 0.000
CCM_09116 Cordyceps militaris CCM_09116 N 0.000
CFIO01_11010 Colletotrichum fioriniae CFIO01_11010 N 0.000
CH063_09168 Colletotrichum higginsianum CH063_09168 N 0.000
CIMG_04579 Coccidioides immitis CIMG_04579 N 0.000
Cob_05478 Colletotrichum orbiculare Cob_05478 N 0.000
COCC4DRAFT_67427 Bipolaris maydis COCC4DRAFT_67427 N 0.000
COCCADRAFT_36164 Bipolaris zeicola COCCADRAFT_36164 N 0.000
COCMIDRAFT_32035 Bipolaris oryzae COCMIDRAFT_32035 N 0.000
COCVIDRAFT_32445 Bipolaris victoriae COCVIDRAFT_32445 N 0.000
CPC735_072140 Coccidioides posadasii CPC735_072140 N 0.000
CPUR_00961 Claviceps purpurea CPUR_00961 N 0.000
CSUB01_00740 Colletotrichum sublineola CSUB01_00740 N 0.000
CTHT_0072500 Chaetomium thermophilum CTHT_0072500 N 0.000
DRE_01470 Drechslerella stenobrocha DRE_01470 N 0.000
estExt_fgenesh1_pg.C_20529 Cochliobolus heterostrophus C5 estExt_fgenesh1_pg.C_20529 N 0.000
estExt_fgenesh3_kg.C_170019 Neurospora discreta estExt_fgenesh3_kg.C_170019 N 0.000
estExt_Genewise1.C_130226 Mycosphaerella fijiensis estExt_Genewise1.C_130226 N 0.000
EURHEDRAFT_513113 Aspergillus ruber EURHEDRAFT_513113 N 0.000
F503_02581 Ophiostoma piceae uamh F503_02581 N 0.000
FFUJ_07687 Fusarium fujikuroi FFUJ_07687 N 0.000
fgenesh1_pg.sca_20_chr6_4_0000313 Nectria haematococca fgenesh1_pg.sca_20_chr6_4_0000313 N 0.000
FGRRES_16034 Fusarium graminearum FGRRES_16034 N 0.000
FOXG_10326 Fusarium oxysporum FOXG_10326 N 0.000
FPSE_06487 Fusarium pseudograminearum FPSE_06487 N 0.000
FVEG_08980 Fusarium verticillioides FVEG_08980 N 0.000
G647_09836 Cladophialophora carrionii G647_09836 N 0.000
GGTG_06713 Gaeumannomyces graminis GGTG_06713 N 0.000
GLRG_11250 Colletotrichum graminicola GLRG_11250 N 0.000
GMDG_07948 Pseudogymnoascus destructans GMDG_07948 N 0.000
gw1.1.1628.1 Mycosphaerella graminicola gw1.1.1628.1 N 0.000
H072_4211 Dactylellina haptotyla H072_4211 N 0.000
H101_08017 Trichophyton interdigitale H101_08017 N 0.000
H102_02460 Trichophyton rubrum H102_02460 N 0.000
H105_02480 Trichophyton soudanense H105_02480 N 0.000
HCBG_00499 Histoplasma capsulatum HCBG_00499 N 0.000
HMPREF1120_04576 Exophiala dermatitidis HMPREF1120_04576 N 0.000
HMPREF1541_07166 Cyphellophora europaea HMPREF1541_07166 N 0.000
HMPREF1624_05570 Sporothrix schenckii HMPREF1624_05570 N 0.000
LEMA_P068990.1 Leptosphaeria maculans LEMA_P068990.1 N 0.000
M437DRAFT_11100 Aureobasidium melanogenum M437DRAFT_11100 N 0.000
M438DRAFT_354688 Aureobasidium pullulans M438DRAFT_354688 N 0.000
M7I_7845 Glarea lozoyensis M7I_7845 N 0.000
MAC_01597 Metarhizium acridum MAC_01597 N 0.000
MAJ_02434 Metarhizium majus MAJ_02434 N 0.000
MAM_00225 Metarhizium album MAM_00225 N 0.000
MANI_028367 Metarhizium anisopliae MANI_028367 N 0.000
MAPG_09781 Magnaporthe poae MAPG_09781 N 0.000
MBM_06418 Marssonina brunnea MBM_06418 N 0.000
MBR_02764 Metarhizium brunneum MBR_02764 N 0.000
MCYG_05887 Arthroderma otae MCYG_05887 N 0.000
MCYG_05887 Microsporum canis MCYG_05887 N 0.000
MGG_01133 Magnaporthe oryzae MGG_01133 N 0.000
MGU_00249 Metarhizium guizhouense MGU_00249 N 0.000
MGYG_06084 Microsporum gypseum MGYG_06084 N 0.000
MYCFIDRAFT_122444 Pseudocercospora fijiensis MYCFIDRAFT_122444 N 0.000
Mycgr3G18562 Zymoseptoria tritici Mycgr3G18562 N 0.000
MYCTH_2303193 Myceliophthora thermophila MYCTH_2303193 N 0.000
NCU05685 Neurospora crassa NCU05685 N 0.000
NechaG81687 Fusarium solani NechaG81687 N 0.000
NEUTE1DRAFT_116766 Neurospora tetrasperma NEUTE1DRAFT_116766 N 0.000
NFIA_035340 Neosartorya fischeri CADNFIAG00003900 N 0.000
OCS_06066 Ophiocordyceps sinensis OCS_06066 N 0.000
OIDMADRAFT_54477 Oidiodendron maius OIDMADRAFT_54477 N 0.000
PAAG_06798 Paracoccidioides sp lutzii PAAG_06798 N 0.000
PABG_01083 Paracoccidioides brasiliensis PABG_01083 N 0.000
Pc18g04060 Penicillium chrysogenum Pc18g04060 N 0.000
PCH_Pc18g04060 Penicillium rubens PCH_Pc18g04060 N 0.000
PDIP_72040 Penicillium digitatum PDIP_72040 N 0.000
PEX1_020210 Penicillium expansum PEX1_020210 N 0.000
PFICI_12752 Pestalotiopsis fici PFICI_12752 N 0.000
PITC_026270 Penicillium italicum PITC_026270 N 0.000
PMAA_055620 Talaromyces marneffei PMAA_055620 N 0.000
PMAA_055620 Penicillium marneffei PMAA_055620 N 0.000
PODANS_7_640 Podospora anserina PODANS_7_640 N 0.000
PTT_05694 Pyrenophora teres PTT_05694 N 0.000
PV04_02222 Capronia semiimmersa PV04_02222 N 0.000
PV06_07756 Exophiala oligosperma PV06_07756 N 0.000
PV09_00457 Verruconis gallopava PV09_00457 N 0.000
PVAR5_1963 Byssochlamys spectabilis PVAR5_1963 N 0.000
S40285_03705 Stachybotrys chlorohalonata S40285_03705 N 0.000
S40288_09129 Stachybotrys chartarum S40288_09129 N 0.000
SAPIO_CDS2051 Scedosporium apiospermum SAPIO_CDS2051 N 0.000
SBOR_3944 Sclerotinia borealis SBOR_3944 N 0.000
SEPMUDRAFT_40399 Sphaerulina musiva SEPMUDRAFT_40399 N 0.000
SETTUDRAFT_162912 Setosphaeria turcica SETTUDRAFT_162912 N 0.000
SMAC_02040 Sordaria macrospora SMAC_02040 N 0.000
SNOG_09798 Stagonospora nodorum SNOG_09798 N 0.000
SNOG_09798 Phaeosphaeria nodorum SNOG_09798 N 0.000
SPBR_00757 Sporothrix brasiliensis SPBR_00757 N 0.000
SS1G_02499 Sclerotinia sclerotiorum SS1G_02499 N 0.000
TEQG_06361 Trichophyton equinum TEQG_06361 N 0.000
TESG_07516 Trichophyton tonsurans TESG_07516 N 0.000
THITE_2120434 Thielavia terrestris THITE_2120434 N 0.000
TRIATDRAFT_299215 Trichoderma atroviride TRIATDRAFT_299215 N 0.000
TRIREDRAFT_120908 Trichoderma reesei TRIREDRAFT_120908 N 0.000
TRIVIDRAFT_216351 Trichoderma virens TRIVIDRAFT_216351 N 0.000
TSTA_016740 Talaromyces stipitatus TSTA_016740 N 0.000
UCREL1_335 Eutypa lata UCREL1_335 N 0.000
UV8b_6562 Ustilaginoidea virens UV8b_6562 N 0.000
V499_07295 Pseudogymnoascus pannorum V499_07295 N 0.000
VHEMI07501 Torrubiella hemipterigena VHEMI07501 N 0.000
W97_06487 Coniosporium apollinis W97_06487 N 0.000
X797_000816 Metarhizium robertsii X797_000816 N 0.000
Z517_00103 Fonsecaea pedrosoi Z517_00103 N 0.000
Z518_02662 Rhinocladiella mackenziei Z518_02662 N 0.000