|
HHAL004926-PA
(Halyomorpha halys)
Nuclear receptor
|
TF Information |
Pfam ID |
Interpro ID |
Gene ID |
CIS-BP ID |
Sequence source |
PF00105 (zf-C4) |
IPR001628 |
HHAL004926-PA |
T307105_2.00 |
Misc (2018-Jan-19) |
NCBI Gene Info:This gene encodes a tumor suppressor protein containing transcriptional activation, DNA binding, and oligomerization domains. The encoded protein responds to diverse cellular stresses to regulate expression of target genes, thereby inducing cell cycle arrest, apoptosis, senescence, DNA repair, or changes in metabolism. Mutations in this gene are associated with a variety of human cancers, including hereditary cancers such as Li-Fraumeni syndrome. Alternative splicing of this gene and the use of alternate promoters result in multiple transcript variants and isoforms. Additional isoforms have also been shown to result from the use of alternate translation initiation codons from identical transcript variants (PMIDs: 12032546, 20937277). [provided by RefSeq, Dec 2016] |
Directly determined binding motifs |
Name/Motif ID |
Species |
Forward |
Reverse |
Type/Study/Study ID |
SR Score |
DBD Identity |
No direct experiments |
|
|
|
|
|
Motifs from related TFs |
Name/Motif ID |
Species |
Forward |
Reverse |
Type/Study/Study ID |
SR Score |
DBD Identity |
EcR
M06414_2.00 |
Drosophila melanogaster |
RAGGTCAW |
WTGACCTY |
B1H
Zhu et al.(2011)
EcR_SANGER_5_FBgn0000546
|
0.920
|
0.862
|
nr1h5.S
M11194_2.00 |
Xenopus laevis |
Transfac license required
|
Transfac license required
|
Transfac
Matys et al.(2006)
V$FXRIR1_Q6
|
0.863
|
0.845
|
NR1H4
M00368_2.00 |
Homo sapiens |
NVRGGTCANN |
NNTGACCYBN |
PBM
Barrera et al.(2016)
NR1H4_REF
|
0.852
|
0.810
|
NR1H4
M05876_2.00 |
Homo sapiens |
DRGKTCAHHKD |
HMDDTGAMCYH |
SMiLE-seq
Isakova et al.(2017)
NR1H4
|
0.852
|
0.810
|
NR1H4
M08152_2.00 |
Homo sapiens |
NNGGTCATTNN |
NNAATGACCNN |
ChIP-seq
Mathelier et al.(2014)
MA1110.1
|
0.852
|
0.810
|
NR1H4
M09263_2.00 |
Homo sapiens |
CCBVNVGGYCRBTGMCCYB |
VRGGKCAVYGRCCBNBVGG |
Misc
Kulakovskiy et al.(2013)
NR1H4_HUMAN.H11MO.0.B
|
0.852
|
0.810
|
Nr1h4
M09332_2.00 |
Mus musculus |
CCBVNVGGYCRBTGMCCYB |
VRGGKCAVYGRCCBNBVGG |
Misc
Kulakovskiy et al.(2013)
NR1H4_MOUSE.H11MO.0.A
|
0.852
|
0.810
|
Nr1h4
M09618_2.00 |
Mus musculus |
NRGGBCANTGVCCY |
RGGBCANTGVCCYN |
Misc
Heinz et al.(2010)
Liver-FXR_Chong_et_al.
|
0.852
|
0.810
|
NR1H4
M11086_2.00 |
Homo sapiens |
Transfac license required
|
Transfac license required
|
Transfac
Matys et al.(2006)
V$FXR_Q2
|
0.852
|
0.810
|
NR1H4
M11087_2.00 |
Homo sapiens |
Transfac license required
|
Transfac license required
|
Transfac
Matys et al.(2006)
V$FXR_Q3
|
0.852
|
0.810
|
NR1H4
M11088_2.00 |
Homo sapiens |
Transfac license required
|
Transfac license required
|
Transfac
Matys et al.(2006)
V$FXR_Q5
|
0.852
|
0.810
|
NR1H4
M11089_2.00 |
Homo sapiens |
Transfac license required
|
Transfac license required
|
Transfac
Matys et al.(2006)
V$FXRRXR_Q5
|
0.852
|
0.810
|
NR1H4
M00367_2.00 |
Homo sapiens |
NNNTWTTATDHNN |
NNDHATAAWANNN |
PBM
Barrera et al.(2016)
NR1H4_C144R
|
0.852
|
0.793
|
NR1H3
M09264_2.00 |
Homo sapiens |
NHRRGGBHABHNNRGGNCA |
TGNCCYNNDVTDVCCYYDN |
Misc
Kulakovskiy et al.(2013)
NR1H3_HUMAN.H11MO.0.B
|
0.793
|
0.655
|
Nr1h3
M09301_2.00 |
Mus musculus |
VDGDNCARAGKBCAN |
NTGVMCTYTGNHCHB |
Misc
Kulakovskiy et al.(2013)
NR1H3_MOUSE.H11MO.0.A
|
0.793
|
0.655
|
For this family, TFs with SR scores > 0.745 will likely have a similar motif |