SNAPOd2T00001873001 (Oikopleura dioica)
Nuclear receptor

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00105 (zf-C4) IPR001628 SNAPOd2T00001873001 T307216_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ENSPMAG00000000180
M02403_2.00
Petromyzon marinus
RGKWCRN

NYGWMCY
PBM
Weirauch et al.(2014)
pTH5509
0.895 0.629
NR1I2
M03925_2.00
Homo sapiens
RGKKCRNNVRGKKCR

YGMMCYBNNYGMMCY
SELEX
Nitta et al.(2015)
NR1I2_1
0.860 0.643
NR1I2
M05625_2.00
Homo sapiens
VRGTTCRNNSRGKTCRH

DYGAMCYSNNYGAACYB
SELEX
Yin et al.(2017)
NR1I2_eDBD_HT-SELEX
0.860 0.643
NR1I2
M09283_2.00
Homo sapiens
DDRRBTYMDNNRAGKTCAN

NTGAMCTYNNHKRAVYYHH
Misc
Kulakovskiy et al.(2013)
NR1I2_HUMAN.H11MO.0.C
0.860 0.643
NR1I2
M05626_2.00
Homo sapiens
VRGKKCRNNVRGKKCRN

NYGMMCYBNNYGMMCYB
SELEX
Yin et al.(2017)
NR1I2_eDBD_Methyl-HT-SELEX
0.860 0.643
VDR
M03363_2.00
Homo sapiens
GRGTTCAYHGRGTTCA

TGAACYCDRTGAACYC
SELEX
Jolma et al.(2013)
VDR_1
0.854 0.571
Vdr
M03429_2.00
Mus musculus
RRGTTCAYHGRGTTCA

TGAACYCDRTGAACYY
SELEX
Jolma et al.(2013)
Vdr_1
0.854 0.571
VDR
M05877_2.00
Homo sapiens
HRRGTTCA

TGAACYYD
SMiLE-seq
Isakova et al.(2017)
VDR
0.854 0.571
VDR
M09269_2.00
Homo sapiens
NRGGKCANNGRGKKCR

YGMMCYCNNTGMCCYN
Misc
Kulakovskiy et al.(2013)
VDR_HUMAN.H11MO.0.A
0.854 0.571
Vdr
M09315_2.00
Mus musculus
NRGGKCANNGRGKKCR

YGMMCYCNNTGMCCYN
Misc
Kulakovskiy et al.(2013)
VDR_MOUSE.H11MO.0.A
0.854 0.571
VDR
M09606_2.00
Homo sapiens
NRRGGTCANNRRGKKCANNN

NNNTGMMCYYNNTGACCYYN
Misc
Heinz et al.(2010)
GM10855-VDR+vitD_GSE22484
0.854 0.571
VDR
M11116_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$VDR_Q3
0.854 0.571
VDR
M11117_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$VDR_Q6_01
0.854 0.571
VDR
M11118_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$VDR_Q6
0.854 0.571
ENSGALG00000028624
M02398_2.00
Gallus gallus
GRGKTCAH

DTGAMCYC
PBM
Weirauch et al.(2014)
pTH6492
0.772 0.557
For this family, TFs with SR scores > 0.745 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
SNAPOd2T00001873001 Nuclear receptor 23 92

Links

Other Nuclear receptor family TFs
Other Oikopleura dioica TFs

122 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
vdr-a Ciona intestinalis ENSCING00000020740 I 0.944
vdr.S Xenopus laevis XB-GENE-864847 I 0.909
vdr Xenopus tropicalis XB-GENE-486505 I 0.908
ENSPMAG00000000180 Petromyzon marinus ENSPMAG00000000180 D 0.895
Cmyd_10006875 Chelonia mydas Cmyd_10006875 I 0.894
ENSPSIG00000018108 Pelodiscus sinensis ENSPSIG00000018108 I 0.894
ENSGMOG00000012720 Gadus morhua ENSGMOG00000012720 I 0.893
vdra Takifugu rubripes ENSTRUG00000011907 I 0.893
ENSONIG00000009200 Oreochromis niloticus ENSONIG00000009200 I 0.893
vdrb Danio rerio ENSDARG00000070721 I 0.893
ENSXMAG00000004608 Xiphophorus maculatus ENSXMAG00000004608 I 0.893
ENSXMAG00000018707 Xiphophorus maculatus ENSXMAG00000018707 I 0.893
ENSPFOG00000014233 Poecilia formosa ENSPFOG00000014233 I 0.893
ENSPFOG00000001655 Poecilia formosa ENSPFOG00000001655 I 0.893
ENSGMOG00000019451 Gadus morhua ENSGMOG00000019451 I 0.893
vdrb Tetraodon nigroviridis ENSTNIG00000007031 I 0.893
vdralpha Oryzias latipes ENSORLG00000001063 I 0.893
vdr Oryzias latipes ENSORLG00000016402 I 0.893
ENSAMXG00000019854 Astyanax mexicanus ENSAMXG00000019854 I 0.893
ENSAMXG00000012991 Astyanax mexicanus ENSAMXG00000012991 I 0.893
vdrb Takifugu rubripes ENSTRUG00000011576 I 0.893
ENSLOCG00000005194 Lepisosteus oculatus ENSLOCG00000005194 I 0.891
vdrb Gasterosteus aculeatus ENSGACG00000007975 I 0.891
ENSONIG00000019378 Oreochromis niloticus ENSONIG00000019378 I 0.891
VDR Anolis carolinensis ENSACAG00000013485 I 0.891
vdra Gasterosteus aculeatus ENSGACG00000004763 I 0.891
Pvit_07440 Pogona vitticeps Pvit_07440 I 0.891
ENSLACG00000019104 Latimeria chalumnae ENSLACG00000019104 I 0.890
nr1i2 Danio rerio ENSDARG00000029766 I 0.886
ENSPMAG00000003695 Petromyzon marinus ENSPMAG00000003695 I 0.882
ENSCSAVG00000001918 Ciona savignyi ENSCSAVG00000001918 I 0.872
NR1I2 Gorilla gorilla ENSGGOG00000007361 I 0.860
NR1I2 Macaca mulatta ENSMMUG00000001976 I 0.860
ENSNLEG00000005060 Nomascus leucogenys ENSNLEG00000005060 I 0.860
NR1I2 Pan troglodytes ENSPTRG00000015263 I 0.860
NR1I2 Felis catus ENSFCAG00000006092 I 0.860
NR1I2 Echinops telfairi ENSETEG00000018117 I 0.860
NR1I2 Callithrix jacchus ENSCJAG00000008854 I 0.860
NR1I2 Equus caballus ENSECAG00000008728 I 0.860
ENSTSYG00000010757 Tarsius syrichta ENSTSYG00000010757 I 0.860
ENSP00000336528 Macaca fascicularis ENSP00000336528 I 0.860
NR1I2 Otolemur garnettii ENSOGAG00000006017 I 0.860
ENSAMEG00000007006 Ailuropoda melanoleuca ENSAMEG00000007006 I 0.860
NR1I2 Homo sapiens ENSG00000144852 D 0.860
Afo_R013462 Aptenodytes forsteri Afo_R013462 I 0.859
Gfo_R005027 Geospiza fortis Gfo_R005027 I 0.857
ENSAMXG00000008863 Astyanax mexicanus ENSAMXG00000008863 I 0.856
Aan_R009572 Calypte anna Aan_R009572 I 0.856
VDR Meleagris gallopavo ENSMGAG00000004846 I 0.856
VDR Taeniopygia guttata ENSTGUG00000017093 I 0.856
ENSGALG00000026166 Gallus gallus ENSGALG00000026166 I 0.856
VDR Sus scrofa ENSSSCG00000020864 I 0.854
ENSSTOG00000026741 Ictidomys tridecemlineatus ENSSTOG00000026741 I 0.854
VDR Tupaia belangeri ENSTBEG00000005717 I 0.854
Myotis_brandtii_VDR_10022134 Myotis brandtii Myotis_brandtii_VDR_10022134 I 0.854
ENSPANG00000011327 Papio anubis ENSPANG00000011327 I 0.854
ENSP00000229022-D1 Bos grunniens ENSP00000229022-D1 I 0.854
ENSPPYG00000004448 Pongo abelii ENSPPYG00000004448 I 0.854
VDR Pteropus vampyrus ENSPVAG00000011085 I 0.854
Vdr Rattus norvegicus ENSRNOG00000054420 I 0.854
ENSMMUP00000008847 Macaca fascicularis ENSMMUP00000008847 I 0.854
VDR Tursiops truncatus ENSTTRG00000012578 I 0.854
ENSOARG00000019372 Ovis aries ENSOARG00000019372 I 0.854
VDR Equus caballus ENSECAG00000015822 I 0.854
VDR Dasypus novemcinctus ENSDNOG00000039161 I 0.854
VDR Erinaceus europaeus ENSEEUG00000011116 I 0.854
VDR Felis catus ENSFCAG00000024594 I 0.854
VDR Gorilla gorilla ENSGGOG00000016473 I 0.854
VDR Homo sapiens ENSG00000111424 D 0.854
VDR Otolemur garnettii ENSOGAG00000005480 I 0.854
ENSCPOG00000006025 Cavia porcellus ENSCPOG00000006025 I 0.854
VDR Bos taurus ENSBTAG00000016414 I 0.854
ENSAMEG00000013706 Ailuropoda melanoleuca ENSAMEG00000013706 I 0.854
VDR Canis familiaris ENSCAFG00000009103 I 0.854
ENSCHOG00000008514 Choloepus hoffmanni ENSCHOG00000008514 I 0.854
VDR Callithrix jacchus ENSCJAG00000015018 I 0.854
VDR Loxodonta africana ENSLAFG00000006418 I 0.854
ENSCSAG00000006576 Chlorocebus sabaeus ENSCSAG00000006576 I 0.854
ENSMODG00000028774 Monodelphis domestica ENSMODG00000028774 I 0.854
VDR Macaca mulatta ENSMMUG00000006727 I 0.854
ENSMPUG00000000419 Mustela putorius furo ENSMPUG00000000419 I 0.854
ENSNLEG00000017900 Nomascus leucogenys ENSNLEG00000017900 I 0.854
VDR Oryctolagus cuniculus ENSOCUG00000027507 I 0.854
VDR Myotis lucifugus ENSMLUG00000000912 I 0.854
Vdr Mus musculus ENSMUSG00000022479 D 0.854
VDR Microcebus murinus ENSMICG00000009017 I 0.854
ENSMEUG00000014791 Macropus eugenii ENSMEUG00000014791 I 0.854
NR1I2 Myotis lucifugus ENSMLUG00000002877 I 0.848
Myotis_brandtii_NR1I2_10031787 Myotis brandtii Myotis_brandtii_NR1I2_10031787 I 0.848
ENSLACG00000010334 Latimeria chalumnae ENSLACG00000010334 I 0.841
NR1I2 Loxodonta africana ENSLAFG00000007829 I 0.837
NR1I2 Procavia capensis ENSPCAG00000009674 I 0.827
ENSP00000336528-D1 Bos grunniens ENSP00000336528-D1 I 0.825
NR1I2 Sus scrofa ENSSSCG00000011890 I 0.825
NR1I2 Bos taurus ENSBTAG00000019557 I 0.822
vdra Tetraodon nigroviridis ENSTNIG00000005559 I 0.820
ENSACAG00000001535 Anolis carolinensis ENSACAG00000001535 I 0.820
NR1I2 Pteropus vampyrus ENSPVAG00000000884 I 0.815
ENSPSIG00000004437 Pelodiscus sinensis ENSPSIG00000004437 I 0.814
Alligator_sinensis_CCG006068.1 Alligator sinensis Alligator_sinensis_CCG006068.1 I 0.810
Cmyd_10001928 Chelonia mydas Cmyd_10001928 I 0.808
PXEA_0000248301 Protopolystoma xenopodis PXEA_0000248301 I 0.799
Pvit_09406 Pogona vitticeps Pvit_09406 I 0.798
nr1i2.L Xenopus laevis XB-GENE-17336519 I 0.798
Pvit_09404 Pogona vitticeps Pvit_09404 I 0.798
NR1I2 Canis familiaris ENSCAFG00000011094 I 0.796
ENSCSAVG00000008466 Ciona savignyi ENSCSAVG00000008466 I 0.792
nr1i2.S Xenopus laevis XB-GENE-865343 I 0.787
SMU15000518 Schmidtea mediterranea SMU15000518 I 0.775
ENSGALG00000028624 Gallus gallus ENSGALG00000028624 D 0.772
Q9DFH3_CHICK Gallus gallus Q9DFH3_CHICK I 0.772
LotgiG138244 Lottia gigantea LotgiG138244 I 0.770
Ogr03312 Ophisaurus gracilis Ogr03312 I 0.768
nhr-91 Caenorhabditis elegans WBGene00003681 I 0.768
CBN09702 Caenorhabditis brenneri CBN09702 I 0.768
CBG07680 Caenorhabditis briggsae CBG07680 I 0.763
CRE15343 Caenorhabditis remanei CRE15343 I 0.761
tetur01g10970 Tetranychus urticae tetur01g10970 I 0.760
CapteG222512 Capitella teleta CapteG222512 I 0.753
A_01252 Schistosoma haematobium A_01252 I 0.751
Smp_134490 Schistosoma mansoni Smp_134490 I 0.751
ENSOARG00000009965 Ovis aries ENSOARG00000009965 I 0.745