SNAPOd2T00002265001 (Oikopleura dioica)
Nuclear receptor

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00105 (zf-C4) IPR001628 SNAPOd2T00002265001 T307218_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Hr39
M03942_2.00
Drosophila melanogaster
CAAGGHCRN

NYGDCCTTG
SELEX
Nitta et al.(2015)
Hr39_1
0.751 0.600
Hr39
M03943_2.00
Drosophila melanogaster
CAAGGYCRH

DYGRCCTTG
SELEX
Nitta et al.(2015)
Hr39_2
0.751 0.600
For this family, TFs with SR scores > 0.745 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
SNAPOd2T00002265001 Nuclear receptor 75 144

Links

Other Nuclear receptor family TFs
Other Oikopleura dioica TFs

52 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
BGIOSGA008492 Oryza indica BGIOSGA008492 I 0.000
BGIOSGA016546 Oryza indica BGIOSGA016546 I 0.000
BGIOSGA023457 Oryza indica BGIOSGA023457 N 0.000
BRADI1G32660 Brachypodium distachyon BRADI1G32660 I 0.000
BRADI3G46900 Brachypodium distachyon BRADI3G46900 I 0.000
Cagra.6372s0006 Capsella grandiflora Cagra.6372s0006 N 0.000
Carubv10011081m.g Capsella rubella Carubv10011081m.g N 0.000
cassava27052.m1 Manihot esculenta cassava27052.m1 I 0.000
Ca_13537 Cicer arietinum Ca_13537 N 0.000
chr3.CM0279.430.nd Lotus japonicus chr3.CM0279.430.nd N 0.000
Cla011742 Citrullus lanatus Cla011742 I 0.000
Eucgr.F01449 Eucalyptus grandis Eucgr.F01449 N 0.000
F775_26920 Aegilops tauschii F775_26920 N 0.000
F775_30297 Aegilops tauschii F775_30297 I 0.000
GLYMA08G18470 Glycine max GLYMA08G18470 N 0.000
GRMZM2G009892 Zea mays GRMZM2G009892 I 0.000
GRMZM2G063522 Zea mays GRMZM2G063522 I 0.000
GRMZM2G167018 Zea mays GRMZM2G167018 I 0.000
GRMZM5G898290 Zea mays GRMZM5G898290 N 0.000
GSMUA_Achr3G23360_001 Musa acuminata GSMUA_Achr3G23360_001 N 0.000
GSMUA_Achr6G30050_001 Musa acuminata GSMUA_Achr6G30050_001 N 0.000
GSMUA_Achr7G23250_001 Musa acuminata GSMUA_Achr7G23250_001 I 0.000
GSMUA_Achr9G10210_001 Musa acuminata GSMUA_Achr9G10210_001 N 0.000
LPERR02G17680 Leersia perrieri LPERR02G17680 N 0.000
LPERR04G11740 Leersia perrieri LPERR04G11740 I 0.000
LPERR06G20430 Leersia perrieri LPERR06G20430 N 0.000
MDP0000298182 Malus domestica MDP0000298182 N 0.000
MLOC_25708 Hordeum vulgare MLOC_25708 N 0.000
MTR_1g008740 Medicago truncatula MTR_1g008740 I 0.000
MTR_2g064470 Medicago truncatula MTR_2g064470 N 0.000
OB02G29280 Oryza brachyantha OB02G29280 N 0.000
OBART02G21850 Oryza barthii OBART02G21850 I 0.000
OBART04G14970 Oryza barthii OBART04G14970 I 0.000
OBART04G25950 Oryza barthii OBART04G25950 N 0.000
OBART06G24550 Oryza barthii OBART06G24550 N 0.000
OGLUM02G22030 Oryza glumaepatula OGLUM02G22030 I 0.000
OGLUM04G14830 Oryza glumaepatula OGLUM04G14830 I 0.000
OGLUM06G25850 Oryza glumaepatula OGLUM06G25850 N 0.000
OGLUM08G21360 Oryza glumaepatula OGLUM08G21360 I 0.000
OLONG_008218 Oryza longistaminata OLONG_008218 I 0.000
OLONG_010248 Oryza longistaminata OLONG_010248 N 0.000
OMERI02G21390 Oryza meridionalis OMERI02G21390 I 0.000
OMERI04G21180 Oryza meridionalis OMERI04G21180 N 0.000
OMERI06G24740 Oryza meridionalis OMERI06G24740 N 0.000
ONIVA02G24080 Oryza nivara ONIVA02G24080 I 0.000
ONIVA02G35380 Oryza nivara ONIVA02G35380 N 0.000
ONIVA04G13100 Oryza nivara ONIVA04G13100 I 0.000
OPUNC06G22270 Oryza punctata OPUNC06G22270 N 0.000
ORGLA04G0119700 Oryza glaberrima ORGLA04G0119700 I 0.000
ORGLA04G0226100 Oryza glaberrima ORGLA04G0226100 N 0.000
ORGLA06G0205600 Oryza glaberrima ORGLA06G0205600 N 0.000
ORGLA08G0177600 Oryza glaberrima ORGLA08G0177600 I 0.000
ORUFI02G22930 Oryza rufipogon ORUFI02G22930 I 0.000
ORUFI04G16370 Oryza rufipogon ORUFI04G16370 I 0.000
ORUFI06G26420 Oryza rufipogon ORUFI06G26420 N 0.000
ORUFI08G22550 Oryza rufipogon ORUFI08G22550 I 0.000
OS02G0579000 Oryza sativa OS02G0579000 I 0.000
OS04G0460600 Oryza sativa OS04G0460600 I 0.000
OS06G0675600 Oryza sativa OS06G0675600 N 0.000
OS08G0511200 Oryza sativa OS08G0511200 I 0.000
Pavir.Db00380 Panicum virgatum Pavir.Db00380 N 0.000
Pavir.Fb00532 Panicum virgatum Pavir.Fb00532 N 0.000
Pavir.Ga00022 Panicum virgatum Pavir.Ga00022 I 0.000
Pavir.Gb00488 Panicum virgatum Pavir.Gb00488 N 0.000
Pavir.Gb01850 Panicum virgatum Pavir.Gb01850 I 0.000
Pavir.J36955 Panicum virgatum Pavir.J36955 I 0.000
PGSC0003DMG400029593 Solanum tuberosum PGSC0003DMG400029593 I 0.000
Sb06g019010 Sorghum bicolor Sb06g019010 I 0.000
Sb07g005610 Sorghum bicolor Sb07g005610 I 0.000
Sb10g027100 Sorghum bicolor Sb10g027100 N 0.000
SELMODRAFT_71307 Selaginella moellendorffii SELMODRAFT_71307 I 0.000
SELMODRAFT_86855 Selaginella moellendorffii SELMODRAFT_86855 I 0.000
Si006975m.g Setaria italica Si006975m.g N 0.000
Si010553m.g Setaria italica Si010553m.g I 0.000
Si010680m.g Setaria italica Si010680m.g I 0.000
Si014180m.g Setaria italica Si014180m.g N 0.000
Si017567m.g Setaria italica Si017567m.g N 0.000
Traes_2AL_CA89051FD Triticum aestivum Traes_2AL_CA89051FD N 0.000
Traes_7AL_BE3253C8F Triticum aestivum Traes_7AL_BE3253C8F N 0.000
Traes_7DL_BDD45DB24 Triticum aestivum Traes_7DL_BDD45DB24 I 0.000
TRIUR3_03895 Triticum urartu TRIUR3_03895 N 0.000
TRIUR3_29250 Triticum urartu TRIUR3_29250 I 0.000
TRIUR3_34020 Triticum urartu TRIUR3_34020 N 0.000