CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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nr1i2.L
(
Xenopus laevis
)
Nuclear receptor
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00105 (zf-C4)
IPR001628
XB-GENE-17336519
T307243_2.00
Misc (2018-Jan-19)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
NR1I2
M03925_2.00
Homo sapiens
RGKKCRNNVRGKKCR
YGMMCYBNNYGMMCY
SELEX
Nitta et al.(2015)
NR1I2_1
0.960
0.714
NR1I2
M05625_2.00
Homo sapiens
VRGTTCRNNSRGKTCRH
DYGAMCYSNNYGAACYB
SELEX
Yin et al.(2017)
NR1I2_eDBD_HT-SELEX
0.960
0.714
NR1I2
M09283_2.00
Homo sapiens
DDRRBTYMDNNRAGKTCAN
NTGAMCTYNNHKRAVYYHH
Misc
Kulakovskiy et al.(2013)
NR1I2_HUMAN.H11MO.0.C
0.960
0.714
NR1I2
M05626_2.00
Homo sapiens
VRGKKCRNNVRGKKCRN
NYGMMCYBNNYGMMCYB
SELEX
Yin et al.(2017)
NR1I2_eDBD_Methyl-HT-SELEX
0.960
0.714
VDR
M03363_2.00
Homo sapiens
GRGTTCAYHGRGTTCA
TGAACYCDRTGAACYC
SELEX
Jolma et al.(2013)
VDR_1
0.958
0.714
Vdr
M03429_2.00
Mus musculus
RRGTTCAYHGRGTTCA
TGAACYCDRTGAACYY
SELEX
Jolma et al.(2013)
Vdr_1
0.958
0.714
VDR
M05877_2.00
Homo sapiens
HRRGTTCA
TGAACYYD
SMiLE-seq
Isakova et al.(2017)
VDR
0.958
0.729
VDR
M09269_2.00
Homo sapiens
NRGGKCANNGRGKKCR
YGMMCYCNNTGMCCYN
Misc
Kulakovskiy et al.(2013)
VDR_HUMAN.H11MO.0.A
0.958
0.729
Vdr
M09315_2.00
Mus musculus
NRGGKCANNGRGKKCR
YGMMCYCNNTGMCCYN
Misc
Kulakovskiy et al.(2013)
VDR_MOUSE.H11MO.0.A
0.958
0.714
VDR
M09606_2.00
Homo sapiens
NRRGGTCANNRRGKKCANNN
NNNTGMMCYYNNTGACCYYN
Misc
Heinz et al.(2010)
GM10855-VDR+vitD_GSE22484
0.958
0.714
VDR
M11116_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$VDR_Q3
0.958
0.714
VDR
M11117_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$VDR_Q6_01
0.958
0.714
VDR
M11118_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$VDR_Q6
0.958
0.714
ENSPMAG00000000180
M02403_2.00
Petromyzon marinus
RGKWCRN
NYGWMCY
PBM
Weirauch et al.(2014)
pTH5509
0.945
0.714
Nr1i2
M09316_2.00
Mus musculus
DDRRBTYMDNNRAGKTCAN
NTGAMCTYNNHKRAVYYHH
Misc
Kulakovskiy et al.(2013)
NR1I2_MOUSE.H11MO.0.C
0.918
0.714
ENSGALG00000028624
M02398_2.00
Gallus gallus
GRGKTCAH
DTGAMCYC
PBM
Weirauch et al.(2014)
pTH6492
0.906
0.657
Nr1i3
M09302_2.00
Mus musculus
DRGGTCANNNRAGTTYAN
NTRAACTYNNNTGACCYH
Misc
Kulakovskiy et al.(2013)
NR1I3_MOUSE.H11MO.0.C
0.873
0.614
NR1I3
M03924_2.00
Homo sapiens
RGKDYRNNNNRGKKYR
YRMMCYNNNNYRHMCY
SELEX
Nitta et al.(2015)
NR1I3_1
0.855
0.657
NR1I3
M05619_2.00
Homo sapiens
WDAGTTCAH
DTGAACTHW
SELEX
Yin et al.(2017)
NR1I3_FL_HT-SELEX
0.855
0.657
NR1I3
M09281_2.00
Homo sapiens
DRGGTCANNNRAGTTYAN
NTRAACTYNNNTGACCYH
Misc
Kulakovskiy et al.(2013)
NR1I3_HUMAN.H11MO.0.C
0.855
0.657
NR1I3
M05620_2.00
Homo sapiens
WDAGTTCRN
NYGAACTHW
SELEX
Yin et al.(2017)
NR1I3_FL_Methyl-HT-SELEX
0.855
0.657
EcR
M06414_2.00
Drosophila melanogaster
RAGGTCAW
WTGACCTY
B1H
Zhu et al.(2011)
EcR_SANGER_5_FBgn0000546
0.773
0.571
For this family, TFs with SR scores >
0.745
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
AAH41187
Nuclear receptor
35
104
KICRACGDRATGYHFNAMTCEGCKGFFRRAMKRNLRLSCPFQNSCVINKSNRRHCQACRLKKCLDIGMRK
CAA53006
Nuclear receptor
35
104
KICRACGDRATGYHFNAMTCEGCKGFFRRAVKRNLRLSCPFQNSCVINKSNRRHCQACRLKKCLDIGMRK
Links
Other
Nuclear receptor
family TFs
Other
Xenopus laevis
TFs
217 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy