CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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nr1i2.S
(
Xenopus laevis
)
Nuclear receptor
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00105 (zf-C4)
IPR001628
XB-GENE-865343
T307320_2.00
Misc (2018-Jan-19)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
NR1I2
M03925_2.00
Homo sapiens
RGKKCRNNVRGKKCR
YGMMCYBNNYGMMCY
SELEX
Nitta et al.(2015)
NR1I2_1
0.960
0.729
NR1I2
M05625_2.00
Homo sapiens
VRGTTCRNNSRGKTCRH
DYGAMCYSNNYGAACYB
SELEX
Yin et al.(2017)
NR1I2_eDBD_HT-SELEX
0.960
0.729
NR1I2
M09283_2.00
Homo sapiens
DDRRBTYMDNNRAGKTCAN
NTGAMCTYNNHKRAVYYHH
Misc
Kulakovskiy et al.(2013)
NR1I2_HUMAN.H11MO.0.C
0.960
0.729
NR1I2
M05626_2.00
Homo sapiens
VRGKKCRNNVRGKKCRN
NYGMMCYBNNYGMMCYB
SELEX
Yin et al.(2017)
NR1I2_eDBD_Methyl-HT-SELEX
0.960
0.729
VDR
M03363_2.00
Homo sapiens
GRGTTCAYHGRGTTCA
TGAACYCDRTGAACYC
SELEX
Jolma et al.(2013)
VDR_1
0.959
0.729
Vdr
M03429_2.00
Mus musculus
RRGTTCAYHGRGTTCA
TGAACYCDRTGAACYY
SELEX
Jolma et al.(2013)
Vdr_1
0.959
0.729
VDR
M05877_2.00
Homo sapiens
HRRGTTCA
TGAACYYD
SMiLE-seq
Isakova et al.(2017)
VDR
0.959
0.729
VDR
M09269_2.00
Homo sapiens
NRGGKCANNGRGKKCR
YGMMCYCNNTGMCCYN
Misc
Kulakovskiy et al.(2013)
VDR_HUMAN.H11MO.0.A
0.959
0.729
Vdr
M09315_2.00
Mus musculus
NRGGKCANNGRGKKCR
YGMMCYCNNTGMCCYN
Misc
Kulakovskiy et al.(2013)
VDR_MOUSE.H11MO.0.A
0.959
0.729
VDR
M09606_2.00
Homo sapiens
NRRGGTCANNRRGKKCANNN
NNNTGMMCYYNNTGACCYYN
Misc
Heinz et al.(2010)
GM10855-VDR+vitD_GSE22484
0.959
0.729
VDR
M11116_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$VDR_Q3
0.959
0.729
VDR
M11117_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$VDR_Q6_01
0.959
0.729
VDR
M11118_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$VDR_Q6
0.959
0.729
ENSPMAG00000000180
M02403_2.00
Petromyzon marinus
RGKWCRN
NYGWMCY
PBM
Weirauch et al.(2014)
pTH5509
0.946
0.729
Nr1i2
M09316_2.00
Mus musculus
DDRRBTYMDNNRAGKTCAN
NTGAMCTYNNHKRAVYYHH
Misc
Kulakovskiy et al.(2013)
NR1I2_MOUSE.H11MO.0.C
0.918
0.714
ENSGALG00000028624
M02398_2.00
Gallus gallus
GRGKTCAH
DTGAMCYC
PBM
Weirauch et al.(2014)
pTH6492
0.900
0.657
Nr1i3
M09302_2.00
Mus musculus
DRGGTCANNNRAGTTYAN
NTRAACTYNNNTGACCYH
Misc
Kulakovskiy et al.(2013)
NR1I3_MOUSE.H11MO.0.C
0.865
0.614
NR1I3
M03924_2.00
Homo sapiens
RGKDYRNNNNRGKKYR
YRMMCYNNNNYRHMCY
SELEX
Nitta et al.(2015)
NR1I3_1
0.852
0.643
NR1I3
M05619_2.00
Homo sapiens
WDAGTTCAH
DTGAACTHW
SELEX
Yin et al.(2017)
NR1I3_FL_HT-SELEX
0.852
0.643
NR1I3
M09281_2.00
Homo sapiens
DRGGTCANNNRAGTTYAN
NTRAACTYNNNTGACCYH
Misc
Kulakovskiy et al.(2013)
NR1I3_HUMAN.H11MO.0.C
0.852
0.643
NR1I3
M05620_2.00
Homo sapiens
WDAGTTCRN
NYGAACTHW
SELEX
Yin et al.(2017)
NR1I3_FL_Methyl-HT-SELEX
0.852
0.643
EcR
M06414_2.00
Drosophila melanogaster
RAGGTCAW
WTGACCTY
B1H
Zhu et al.(2011)
EcR_SANGER_5_FBgn0000546
0.773
0.557
For this family, TFs with SR scores >
0.745
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
AAG24910
Nuclear receptor
36
105
KICRACGDRATGYHFNAMTCEGCKGFFRRAMKRNLRLSCPFQNSCVINKNNRRHCQACRLKKCLDIGMRK
AAH61658
Nuclear receptor
36
105
KICRACGDRATGYHFNAMTCEGCKGFFRRAMKRNLRLSCPFQNSCVINKNNRRHCQACRLKKCLDIGMRK
Links
Other
Nuclear receptor
family TFs
Other
Xenopus laevis
TFs
216 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
nr1i2.L
Xenopus laevis
XB-GENE-17336519
I
0.989
NR1I2
Myotis lucifugus
ENSMLUG00000002877
I
0.964
Myotis_brandtii_NR1I2_10031787
Myotis brandtii
Myotis_brandtii_NR1I2_10031787
I
0.964
Afo_R013462
Aptenodytes forsteri
Afo_R013462
I
0.961
NR1I2
Felis catus
ENSFCAG00000006092
I
0.960
NR1I2
Equus caballus
ENSECAG00000008728
I
0.960
ENSNLEG00000005060
Nomascus leucogenys
ENSNLEG00000005060
I
0.960
ENSTSYG00000010757
Tarsius syrichta
ENSTSYG00000010757
I
0.960
NR1I2
Callithrix jacchus
ENSCJAG00000008854
I
0.960
NR1I2
Gorilla gorilla
ENSGGOG00000007361
I
0.960
ENSGALG00000026166
Gallus gallus
ENSGALG00000026166
I
0.960
NR1I2
Echinops telfairi
ENSETEG00000018117
I
0.960
NR1I2
Homo sapiens
ENSG00000144852
D
0.960
Aan_R009572
Calypte anna
Aan_R009572
I
0.960
Gfo_R005027
Geospiza fortis
Gfo_R005027
I
0.960
ENSP00000336528
Macaca fascicularis
ENSP00000336528
I
0.960
NR1I2
Macaca mulatta
ENSMMUG00000001976
I
0.960
ENSAMEG00000007006
Ailuropoda melanoleuca
ENSAMEG00000007006
I
0.960
NR1I2
Pan troglodytes
ENSPTRG00000015263
I
0.960
VDR
Meleagris gallopavo
ENSMGAG00000004846
I
0.960
VDR
Taeniopygia guttata
ENSTGUG00000017093
I
0.960
ENSPANG00000011327
Papio anubis
ENSPANG00000011327
I
0.959
VDR
Felis catus
ENSFCAG00000024594
I
0.959
ENSPPYG00000004448
Pongo abelii
ENSPPYG00000004448
I
0.959
VDR
Equus caballus
ENSECAG00000015822
I
0.959
VDR
Erinaceus europaeus
ENSEEUG00000011116
I
0.959
VDR
Homo sapiens
ENSG00000111424
D
0.959
VDR
Loxodonta africana
ENSLAFG00000006418
I
0.959
ENSMEUG00000014791
Macropus eugenii
ENSMEUG00000014791
I
0.959
VDR
Microcebus murinus
ENSMICG00000009017
I
0.959
VDR
Myotis lucifugus
ENSMLUG00000000912
I
0.959
VDR
Macaca mulatta
ENSMMUG00000006727
I
0.959
ENSMPUG00000000419
Mustela putorius furo
ENSMPUG00000000419
I
0.959
Vdr
Mus musculus
ENSMUSG00000022479
D
0.959
VDR
Otolemur garnettii
ENSOGAG00000005480
I
0.959
VDR
Oryctolagus cuniculus
ENSOCUG00000027507
I
0.959
ENSOARG00000019372
Ovis aries
ENSOARG00000019372
I
0.959
ENSNLEG00000017900
Nomascus leucogenys
ENSNLEG00000017900
I
0.959
VDR
Gorilla gorilla
ENSGGOG00000016473
I
0.959
VDR
Pteropus vampyrus
ENSPVAG00000011085
I
0.959
VDR
Bos taurus
ENSBTAG00000016414
I
0.959
VDR
Canis familiaris
ENSCAFG00000009103
I
0.959
ENSCHOG00000008514
Choloepus hoffmanni
ENSCHOG00000008514
I
0.959
ENSCPOG00000006025
Cavia porcellus
ENSCPOG00000006025
I
0.959
VDR
Tursiops truncatus
ENSTTRG00000012578
I
0.959
ENSAMEG00000013706
Ailuropoda melanoleuca
ENSAMEG00000013706
I
0.959
Myotis_brandtii_VDR_10022134
Myotis brandtii
Myotis_brandtii_VDR_10022134
I
0.959
ENSP00000229022-D1
Bos grunniens
ENSP00000229022-D1
I
0.959
ENSMMUP00000008847
Macaca fascicularis
ENSMMUP00000008847
I
0.959
VDR
Tupaia belangeri
ENSTBEG00000005717
I
0.959
VDR
Callithrix jacchus
ENSCJAG00000015018
I
0.959
Vdr
Rattus norvegicus
ENSRNOG00000054420
I
0.959
VDR
Sus scrofa
ENSSSCG00000020864
I
0.959
ENSCSAG00000006576
Chlorocebus sabaeus
ENSCSAG00000006576
I
0.959
VDR
Dasypus novemcinctus
ENSDNOG00000039161
I
0.959
ENSSTOG00000026741
Ictidomys tridecemlineatus
ENSSTOG00000026741
I
0.959
ENSMODG00000028774
Monodelphis domestica
ENSMODG00000028774
I
0.959
ENSMEUG00000000113
Macropus eugenii
ENSMEUG00000000113
I
0.957
ENSSHAG00000004437
Sarcophilus harrisii
ENSSHAG00000004437
I
0.957
ENSLACG00000010334
Latimeria chalumnae
ENSLACG00000010334
I
0.955
NR1I2
Pteropus vampyrus
ENSPVAG00000000884
I
0.955
ENSP00000336528-D1
Bos grunniens
ENSP00000336528-D1
I
0.952
NR1I2
Sus scrofa
ENSSSCG00000011890
I
0.952
ENSPMAG00000003695
Petromyzon marinus
ENSPMAG00000003695
I
0.951
NR1I2
Bos taurus
ENSBTAG00000019557
I
0.949
ENSXMAG00000004608
Xiphophorus maculatus
ENSXMAG00000004608
I
0.947
ENSXMAG00000018707
Xiphophorus maculatus
ENSXMAG00000018707
I
0.947
vdra
Takifugu rubripes
ENSTRUG00000011907
I
0.947
ENSONIG00000019378
Oreochromis niloticus
ENSONIG00000019378
I
0.947
vdralpha
Oryzias latipes
ENSORLG00000001063
I
0.947
ENSONIG00000009200
Oreochromis niloticus
ENSONIG00000009200
I
0.947
vdrb
Tetraodon nigroviridis
ENSTNIG00000007031
I
0.947
vdr
Oryzias latipes
ENSORLG00000016402
I
0.947
vdrb
Takifugu rubripes
ENSTRUG00000011576
I
0.947
ENSPFOG00000014233
Poecilia formosa
ENSPFOG00000014233
I
0.947
ENSPFOG00000001655
Poecilia formosa
ENSPFOG00000001655
I
0.947
ENSGMOG00000019451
Gadus morhua
ENSGMOG00000019451
I
0.947
vdrb
Gasterosteus aculeatus
ENSGACG00000007975
I
0.947
vdra
Gasterosteus aculeatus
ENSGACG00000004763
I
0.947
vdrb
Danio rerio
ENSDARG00000070721
I
0.947
ENSLOCG00000005194
Lepisosteus oculatus
ENSLOCG00000005194
I
0.947
ENSAMXG00000019854
Astyanax mexicanus
ENSAMXG00000019854
I
0.947
ENSAMXG00000012991
Astyanax mexicanus
ENSAMXG00000012991
I
0.946
ENSPMAG00000000180
Petromyzon marinus
ENSPMAG00000000180
D
0.946
Cmyd_10006875
Chelonia mydas
Cmyd_10006875
I
0.946
ENSGMOG00000012720
Gadus morhua
ENSGMOG00000012720
I
0.946
nr1i2
Danio rerio
ENSDARG00000029766
I
0.946
ENSPSIG00000018108
Pelodiscus sinensis
ENSPSIG00000018108
I
0.946
Pvit_07440
Pogona vitticeps
Pvit_07440
I
0.946
VDR
Anolis carolinensis
ENSACAG00000013485
I
0.946
ENSLACG00000019104
Latimeria chalumnae
ENSLACG00000019104
I
0.944
NR1I2
Otolemur garnettii
ENSOGAG00000006017
I
0.935
vdr.S
Xenopus laevis
XB-GENE-864847
I
0.934
NR1I2
Canis familiaris
ENSCAFG00000011094
I
0.934
ENSSTOG00000003818
Ictidomys tridecemlineatus
ENSSTOG00000003818
I
0.933
ENSSHAG00000016687
Sarcophilus harrisii
ENSSHAG00000016687
I
0.933
ENSTSYG00000003990
Tarsius syrichta
ENSTSYG00000003990
I
0.932
vdr
Xenopus tropicalis
XB-GENE-486505
I
0.932
ENSAMEG00000015383
Ailuropoda melanoleuca
ENSAMEG00000015383
I
0.930
ENSCSAVG00000001918
Ciona savignyi
ENSCSAVG00000001918
I
0.928
ENSPSIG00000004437
Pelodiscus sinensis
ENSPSIG00000004437
I
0.925
ENSMEUG00000001987
Macropus eugenii
ENSMEUG00000001987
I
0.925
Cmyd_10001928
Chelonia mydas
Cmyd_10001928
I
0.925
ENSAMXG00000008863
Astyanax mexicanus
ENSAMXG00000008863
I
0.924
vdra
Tetraodon nigroviridis
ENSTNIG00000005559
I
0.921
NR1I2
Ochotona princeps
ENSOPRG00000010448
I
0.919
ENSSTOG00000014988
Ictidomys tridecemlineatus
ENSSTOG00000014988
I
0.918
Nr1i2
Dipodomys ordii
ENSDORG00000003966
I
0.918
NR1I2
Cavia porcellus
ENSCPOG00000020161
I
0.918
Nr1i2
Rattus norvegicus
ENSRNOG00000002906
I
0.918
Nr1i2
Mus musculus
ENSMUSG00000022809
D
0.918
NR1I2
Procavia capensis
ENSPCAG00000009674
I
0.917
NR1I2
Loxodonta africana
ENSLAFG00000007829
I
0.914
NR1I3
Cavia porcellus
ENSCPOG00000015331
I
0.913
vdr-a
Ciona intestinalis
ENSCING00000020740
I
0.913
ENSACAG00000001535
Anolis carolinensis
ENSACAG00000001535
I
0.912
NR1I3
Monodelphis domestica
ENSMODG00000005089
I
0.903
Q9DFH3_CHICK
Gallus gallus
Q9DFH3_CHICK
I
0.900
ENSGALG00000028624
Gallus gallus
ENSGALG00000028624
D
0.900
nr1i2
Tetraodon nigroviridis
ENSTNIG00000013932
I
0.900
ENSCSAVG00000008466
Ciona savignyi
ENSCSAVG00000008466
I
0.899
Ogr03312
Ophisaurus gracilis
Ogr03312
I
0.898
NR1I3
Canis familiaris
ENSCAFG00000012921
I
0.897
NR1I3
Erinaceus europaeus
ENSEEUG00000004981
I
0.892
Alligator_sinensis_CCG006068.1
Alligator sinensis
Alligator_sinensis_CCG006068.1
I
0.891
NR1I3
Sorex araneus
ENSSARG00000002684
I
0.891
ENSP00000356959-D1
Bos grunniens
ENSP00000356959-D1
I
0.890
NR1I3
Sus scrofa
ENSSSCG00000006353
I
0.890
NR1I3
Bos taurus
ENSBTAG00000009215
I
0.890
NR1I3
Felis catus
ENSFCAG00000000497
I
0.887
NR1I3
Procavia capensis
ENSPCAG00000013933
I
0.886
NR1I3
Loxodonta africana
ENSLAFG00000001180
I
0.886
Pvit_09404
Pogona vitticeps
Pvit_09404
I
0.884
Pvit_09406
Pogona vitticeps
Pvit_09406
I
0.884
NR1I3
Dasypus novemcinctus
ENSDNOG00000045179
I
0.883
NR1I3
Oryctolagus cuniculus
ENSOCUG00000013537
I
0.877
NR1I3
Equus caballus
ENSECAG00000020930
I
0.875
ENSMPUG00000014388
Mustela putorius furo
ENSMPUG00000014388
I
0.873
NR1I3
Ochotona princeps
ENSOPRG00000003455
I
0.867
ENSDORG00000001701
Dipodomys ordii
ENSDORG00000001701
I
0.866
Nr1i3
Rattus norvegicus
ENSRNOG00000003260
I
0.865
Nr1i3
Mus musculus
ENSMUSG00000005677
D
0.865
NR1I3
Pteropus vampyrus
ENSPVAG00000005540
I
0.865
ENSPFOG00000007256
Poecilia formosa
ENSPFOG00000007256
I
0.862
NR1I2
Oryctolagus cuniculus
ENSOCUG00000006125
I
0.859
Alligator_sinensis_CCG005392.1
Alligator sinensis
Alligator_sinensis_CCG005392.1
I
0.854
NR1I3
Otolemur garnettii
ENSOGAG00000013738
I
0.853
ENSNLEG00000014287
Nomascus leucogenys
ENSNLEG00000014287
I
0.852
NR1I3
Pan troglodytes
ENSPTRG00000001582
I
0.852
NR1I3
Homo sapiens
ENSG00000143257
D
0.852
NR1I3
Gorilla gorilla
ENSGGOG00000005724
I
0.850
NR1I3
Callithrix jacchus
ENSCJAG00000004783
I
0.846
ENSPANG00000014194
Papio anubis
ENSPANG00000014194
I
0.844
ENSCSAG00000002676
Chlorocebus sabaeus
ENSCSAG00000002676
I
0.844
NR1I3
Macaca mulatta
ENSMMUG00000018128
I
0.844
ENSP00000356959
Macaca fascicularis
ENSP00000356959
I
0.844
ENSXMAG00000003990
Xiphophorus maculatus
ENSXMAG00000003990
I
0.837
nr1i2
Oryzias latipes
ENSORLG00000017953
I
0.827
nr1i2
Takifugu rubripes
ENSTRUG00000003245
I
0.827
ENSOARG00000009965
Ovis aries
ENSOARG00000009965
I
0.818
nr1i3
Xenopus tropicalis
XB-GENE-479859
I
0.804
SNAPOd2T00001873001
Oikopleura dioica
SNAPOd2T00001873001
I
0.787
GJ20887
Drosophila virilis
FBgn0208023
I
0.782
GI21285
Drosophila mojavensis
FBgn0144015
I
0.782
GH20948
Drosophila grimshawi
FBgn0128410
I
0.782
tetur01g10970
Tetranychus urticae
tetur01g10970
I
0.781
GG10830
Drosophila erecta
FBgn0103135
I
0.779
BGIBMGA006767
Bombyx mori
BGIBMGA006767
I
0.775
AQUA002870
Anopheles quadriannulatus
AQUA002870
I
0.775
AMIN006955
Anopheles minimus
AMIN006955
I
0.775
CPIJ002963
Culex quinquefasciatus
CPIJ002963
I
0.775
AGAP012211
Anopheles gambiae
AGAP012211
I
0.775
ADAC008672
Anopheles darlingi
ADAC008672
I
0.775
CpipJ_CPIJ002963
Culex pipiens
CpipJ_CPIJ002963
I
0.775
LCUP007589
Lucilia cuprina
LCUP007589
I
0.775
MDOA013387
Musca domestica
MDOA013387
I
0.775
ASTEI02489
Anopheles stephensi
ASTEI02489
I
0.775
AMEM018998
Anopheles merus
AMEM018998
I
0.775
AFUN015736
Anopheles funestus
AFUN015736
I
0.775
ACOM026429
Anopheles coluzzii
ACOM026429
I
0.775
AATE015478
Anopheles atroparvus
AATE015478
I
0.775
AARA003299
Anopheles arabiensis
AARA003299
I
0.775
AALB010791
Anopheles albimanus
AALB010791
I
0.775
KGM_08219
Danaus plexippus
KGM_08219
I
0.775
ACUA000806
Anopheles culicifacies
ACUA000806
I
0.775
AFAF021556
Anopheles farauti
AFAF021556
I
0.775
AEPI000843
Anopheles epiroticus
AEPI000843
I
0.775
ADIR001886
Anopheles dirus
ADIR001886
I
0.775
ECR
Aedes aegypti
AAEL009600
I
0.775
HMEL012265
Heliconius melpomene
HMEL012265
I
0.775
PPAI003337
Phlebotomus papatasi
PPAI003337
I
0.774
EcR
Drosophila melanogaster
FBgn0000546
D
0.773
GE19426
Drosophila yakuba
FBgn0236769
I
0.773
EcR
Drosophila pseudoobscura
FBgn0243551
I
0.773
GA24101
Drosophila pseudoobscura
FBgn0245500
I
0.773
GK21996
Drosophila willistoni
FBgn0223981
I
0.773
GD10334
Drosophila simulans
FBgn0182106
I
0.773
GF13818
Drosophila ananassae
FBgn0090845
I
0.773
GL16258
Drosophila persimilis
FBgn0153862
I
0.773
GM16480
Drosophila sechellia
FBgn0171395
I
0.773
GB48059
Apis mellifera
GB48059
I
0.772
ISCW003147
Ixodes scapularis
ISCW003147
I
0.772
L798_01568
Zootermopsis nevadensis
L798_01568
I
0.772
tetur01g15140
Tetranychus urticae
tetur01g15140
I
0.772
ACYPI001692
Acyrthosiphon pisum
ACYPI001692
I
0.772
SMAR011767
Strigamia maritima
SMAR011767
I
0.772
TC012112
Tribolium castaneum
TC012112
I
0.772
NV11088
Nasonia vitripennis
NV11088
I
0.772
RPRC014174
Rhodnius prolixus
RPRC014174
I
0.772
DAPPUDRAFT_319648
Daphnia pulex
DAPPUDRAFT_319648
I
0.771
ENSONIG00000014385
Oreochromis niloticus
ENSONIG00000014385
I
0.766
PHUM467460
Pediculus humanus
PHUM467460
I
0.762
CLEC002129
Cimex lectularius
CLEC002129
I
0.757
LDEC009466
Leptinotarsa decemlineata
LDEC009466
I
0.751
SMU15000518
Schmidtea mediterranea
SMU15000518
I
0.747