csin100859 (Clonorchis sinensis)
Nuclear receptor

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00105 (zf-C4) IPR001628 csin100859 T308373_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
GA30480
M02409_2.00
Drosophila pseudoobscura
RAGATCAM

KTGATCTY
PBM
Weirauch et al.(2014)
pTH5877
0.977 0.871
Hr51
M06432_2.00
Drosophila melanogaster
AMRDATCARARGW

WCYTYTGATHYKT
B1H
Zhu et al.(2011)
Hr51_SANGER_5_FBgn0034012
0.977 0.871
NR2E3
M00373_2.00
Homo sapiens
NRAGATCAMN

NKTGATCTYN
PBM
Barrera et al.(2016)
NR2E3_REF
0.963 0.800
Nr2e3
M02708_2.00
Mus musculus
AAGCTTD

HAAGCTT
SELEX
Mathelier et al.(2014)
MA0164.1
0.963 0.800
Nr2e3
M09328_2.00
Mus musculus
NAAGTCAAAARKCA

TGMYTTTTGACTTN
Misc
Kulakovskiy et al.(2013)
NR2E3_MOUSE.H11MO.0.C
0.963 0.800
NR2E3
M00372_2.00
Homo sapiens
AAAGATCA

TGATCTTT
PBM
Barrera et al.(2016)
NR2E3_R77Q
0.963 0.786
NR2E3
M00370_2.00
Homo sapiens
NNNWRABATCANN

NNTGATVTYWNNN
PBM
Barrera et al.(2016)
NR2E3_R76Q
0.957 0.786
NR2E3
M00371_2.00
Homo sapiens
NNNHAATWTRTNN

NNAYAWATTDNNN
PBM
Barrera et al.(2016)
NR2E3_R76W
0.951 0.786
NR2E3
M00369_2.00
Homo sapiens
NGGGRTCAHN

NDTGAYCCCN
PBM
Barrera et al.(2016)
NR2E3_G56R
0.943 0.786
For this family, TFs with SR scores > 0.745 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
csin100859 Nuclear receptor 268 338

Links

Other Nuclear receptor family TFs
Other Clonorchis sinensis TFs

167 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
29599.m000177 Ricinus communis 29599.m000177 I 0.000
29739.m003713 Ricinus communis 29739.m003713 I 0.000
29769.m000463 Ricinus communis 29769.m000463 I 0.000
30185.m000956 Ricinus communis 30185.m000956 I 0.000
AMTR_s00007p00267580 Amborella trichopoda AMTR_s00007p00267580 I 0.000
AMTR_s00025p00198750 Amborella trichopoda AMTR_s00025p00198750 I 0.000
AMTR_s00092p00072950 Amborella trichopoda AMTR_s00092p00072950 I 0.000
Aquca_002_01425 Aquilegia coerulea Aquca_002_01425 I 0.000
Aquca_018_00174 Aquilegia coerulea Aquca_018_00174 I 0.000
ARF16 Oryza indica BGIOSGA022468 I 0.000
ARF19 Arabidopsis thaliana AT1G19220 I 0.000
ARF6 Vitis vinifera VIT_10s0003g04100 I 0.000
BGIOSGA023559 Oryza indica BGIOSGA023559 I 0.000
BGIOSGA026655 Oryza indica BGIOSGA026655 I 0.000
Bo2g023110 Brassica oleracea Bo2g023110 I 0.000
Bo4g136370 Brassica oleracea Bo4g136370 I 0.000
Bo5g027250 Brassica oleracea Bo5g027250 I 0.000
Bo6g099440 Brassica oleracea Bo6g099440 I 0.000
Bo8g068380 Brassica oleracea Bo8g068380 I 0.000
Bo9g151530 Brassica oleracea Bo9g151530 I 0.000
Bostr.26527s0132 Boechera stricta Bostr.26527s0132 I 0.000
Bostr.7128s0527 Boechera stricta Bostr.7128s0527 I 0.000
Bra002327 Brassica rapa Bra002327 I 0.000
Bra004125 Brassica rapa Bra004125 I 0.000
Bra020125 Brassica rapa Bra020125 I 0.000
Bra025720 Brassica rapa Bra025720 I 0.000
Bra028110 Brassica rapa Bra028110 I 0.000
BRADI1G46602 Brachypodium distachyon BRADI1G46602 I 0.000
BRADI3G40437 Brachypodium distachyon BRADI3G40437 I 0.000
Cagra.1796s0004 Capsella grandiflora Cagra.1796s0004 I 0.000
Cagra.1961s0078 Capsella grandiflora Cagra.1961s0078 I 0.000
Carubv10008159m.g Capsella rubella Carubv10008159m.g I 0.000
cassava2408.valid.m1 Manihot esculenta cassava2408.valid.m1 I 0.000
cassava25060.valid.m1 Manihot esculenta cassava25060.valid.m1 I 0.000
cassava29103.valid.m1 Manihot esculenta cassava29103.valid.m1 I 0.000
cassava29104.valid.m1 Manihot esculenta cassava29104.valid.m1 I 0.000
cassava30265.valid.m1 Manihot esculenta cassava30265.valid.m1 I 0.000
cassava30266.valid.m1 Manihot esculenta cassava30266.valid.m1 I 0.000
cassava32201.m1 Manihot esculenta cassava32201.m1 I 0.000
cassava35541.valid.m1 Manihot esculenta cassava35541.valid.m1 I 0.000
cassava44112.valid.m1 Manihot esculenta cassava44112.valid.m1 I 0.000
cassava7809.valid.m1 Manihot esculenta cassava7809.valid.m1 I 0.000
Ca_03128 Cicer arietinum Ca_03128 I 0.000
Ca_05025 Cicer arietinum Ca_05025 I 0.000
Ca_10748 Cicer arietinum Ca_10748 I 0.000
Ca_15694 Cicer arietinum Ca_15694 I 0.000
Ca_19289 Cicer arietinum Ca_19289 I 0.000
chr2.CM0373.570.nc Lotus japonicus chr2.CM0373.570.nc I 0.000
chr4.CM0006.290.nc Lotus japonicus chr4.CM0006.290.nc I 0.000
chr6.CM0420.80.nd Lotus japonicus chr6.CM0420.80.nd I 0.000
Ciclev10007286m.g Citrus clementina Ciclev10007286m.g I 0.000
Ciclev10007292m.g Citrus clementina Ciclev10007292m.g I 0.000
Ciclev10014200m.g Citrus clementina Ciclev10014200m.g I 0.000
Cla005884 Citrullus lanatus Cla005884 I 0.000
Cla009963 Citrullus lanatus Cla009963 I 0.000
Cla017138 Citrullus lanatus Cla017138 I 0.000
Cla019844 Citrullus lanatus Cla019844 I 0.000
Cla021128 Citrullus lanatus Cla021128 I 0.000
Cucsa.047990 Cucumis sativus Cucsa.047990 I 0.000
Cucsa.071070 Cucumis sativus Cucsa.071070 I 0.000
Cucsa.117430 Cucumis sativus Cucsa.117430 N 0.000
Cucsa.152170 Cucumis sativus Cucsa.152170 I 0.000
Eucgr.C02178 Eucalyptus grandis Eucgr.C02178 I 0.000
Eucgr.C03293 Eucalyptus grandis Eucgr.C03293 I 0.000
F775_12532 Aegilops tauschii F775_12532 I 0.000
gene08492-v1.0-hybrid Fragaria vesca gene08492-v1.0-hybrid I 0.000
gene12224-v1.0-hybrid Fragaria vesca gene12224-v1.0-hybrid I 0.000
gene12917-v1.0-hybrid Fragaria vesca gene12917-v1.0-hybrid I 0.000
gene30394-v1.0-hybrid Fragaria vesca gene30394-v1.0-hybrid I 0.000
GLYMA01G00510 Glycine max GLYMA01G00510 I 0.000
GLYMA02G40650 Glycine max GLYMA02G40650 I 0.000
GLYMA05G36430 Glycine max GLYMA05G36430 I 0.000
GLYMA09G08350 Glycine max GLYMA09G08350 I 0.000
GLYMA13G17270 Glycine max GLYMA13G17270 I 0.000
GLYMA13G29320 Glycine max GLYMA13G29320 I 0.000
GLYMA14G38940 Glycine max GLYMA14G38940 I 0.000
GLYMA15G09750 Glycine max GLYMA15G09750 I 0.000
GLYMA15G19980 Glycine max GLYMA15G19980 I 0.000
GLYMA17G05220 Glycine max GLYMA17G05220 I 0.000
Gorai.008G097200 Gossypium raimondii Gorai.008G097200 I 0.000
Gorai.009G037100 Gossypium raimondii Gorai.009G037100 I 0.000
Gorai.009G152700 Gossypium raimondii Gorai.009G152700 I 0.000
Gorai.010G091300 Gossypium raimondii Gorai.010G091300 I 0.000
GRMZM2G034840 Zea mays GRMZM2G034840 I 0.000
GRMZM2G081158 Zea mays GRMZM2G081158 I 0.000
GRMZM2G086949 Zea mays GRMZM2G086949 I 0.000
GRMZM2G102845 Zea mays GRMZM2G102845 I 0.000
GRMZM2G160005 Zea mays GRMZM2G160005 I 0.000
GRMZM2G317900 Zea mays GRMZM2G317900 I 0.000
GSMUA_Achr11G01610_001 Musa acuminata GSMUA_Achr11G01610_001 I 0.000
GSMUA_Achr11G25770_001 Musa acuminata GSMUA_Achr11G25770_001 I 0.000
GSMUA_Achr3G10240_001 Musa acuminata GSMUA_Achr3G10240_001 I 0.000
GSMUA_Achr5G05010_001 Musa acuminata GSMUA_Achr5G05010_001 I 0.000
GSMUA_Achr6G19850_001 Musa acuminata GSMUA_Achr6G19850_001 I 0.000
GSMUA_Achr9G14090_001 Musa acuminata GSMUA_Achr9G14090_001 I 0.000
GSMUA_Achr9G18170_001 Musa acuminata GSMUA_Achr9G18170_001 I 0.000
LjSGA_069146.1 Lotus japonicus LjSGA_069146.1 I 0.000
LPERR06G05720 Leersia perrieri LPERR06G05720 I 0.000
LPERR06G22130 Leersia perrieri LPERR06G22130 I 0.000
LPERR08G17530 Leersia perrieri LPERR08G17530 I 0.000
Lus10007386.g Linum usitatissimum Lus10007386.g I 0.000
Lus10010969.g Linum usitatissimum Lus10010969.g I 0.000
Lus10017640.g Linum usitatissimum Lus10017640.g I 0.000
Lus10022943.g Linum usitatissimum Lus10022943.g I 0.000
Lus10024320.g Linum usitatissimum Lus10024320.g I 0.000
Lus10027600.g Linum usitatissimum Lus10027600.g I 0.000
Lus10031354.g Linum usitatissimum Lus10031354.g I 0.000
Lus10033597.g Linum usitatissimum Lus10033597.g I 0.000
Lus10033635.g Linum usitatissimum Lus10033635.g I 0.000
MDP0000143749 Malus domestica MDP0000143749 I 0.000
MDP0000185253 Malus domestica MDP0000185253 I 0.000
MDP0000211459 Malus domestica MDP0000211459 I 0.000
MDP0000232417 Malus domestica MDP0000232417 I 0.000
MDP0000268306 Malus domestica MDP0000268306 I 0.000
MDP0000876321 Malus domestica MDP0000876321 I 0.000
MDP0000886637 Malus domestica MDP0000886637 I 0.000
mgf005961m Mimulus guttatus mgf005961m I 0.000
mgf007038m Mimulus guttatus mgf007038m I 0.000
mgf012918m Mimulus guttatus mgf012918m I 0.000
MLOC_14584 Hordeum vulgare MLOC_14584 I 0.000
MLOC_55345 Hordeum vulgare MLOC_55345 I 0.000
MLOC_58330 Hordeum vulgare MLOC_58330 I 0.000
MP Vitis vinifera VIT_18s0001g13930 I 0.000
MTR_1g024025 Medicago truncatula MTR_1g024025 I 0.000
MTR_2g043250 Medicago truncatula MTR_2g043250 I 0.000
MTR_4g124900 Medicago truncatula MTR_4g124900 I 0.000
MTR_5g076270 Medicago truncatula MTR_5g076270 I 0.000
MTR_8g101360 Medicago truncatula MTR_8g101360 I 0.000
NPH4 Arabidopsis thaliana AT5G20730 I 0.000
NPH4 Arabidopsis lyrata fgenesh2_kg.6__2115__AT5G20730.1 I 0.000
OB06G15720 Oryza brachyantha OB06G15720 I 0.000
OB06G34290 Oryza brachyantha OB06G34290 I 0.000
OB12G25550 Oryza brachyantha OB12G25550 I 0.000
OBART06G06150 Oryza barthii OBART06G06150 I 0.000
OBART06G26550 Oryza barthii OBART06G26550 I 0.000
OBART08G20780 Oryza barthii OBART08G20780 I 0.000
OGLUM06G06490 Oryza glumaepatula OGLUM06G06490 I 0.000
OGLUM06G27960 Oryza glumaepatula OGLUM06G27960 I 0.000
OGLUM08G22050 Oryza glumaepatula OGLUM08G22050 I 0.000
OLONG_008746 Oryza longistaminata OLONG_008746 N 0.000
OLONG_009780 Oryza longistaminata OLONG_009780 I 0.000
OMERI02G01870 Oryza meridionalis OMERI02G01870 I 0.000
OMERI03G32190 Oryza meridionalis OMERI03G32190 I 0.000
OMERI06G26660 Oryza meridionalis OMERI06G26660 I 0.000
ONIVA06G07160 Oryza nivara ONIVA06G07160 I 0.000
ONIVA06G29090 Oryza nivara ONIVA06G29090 I 0.000
ONIVA08G23730 Oryza nivara ONIVA08G23730 I 0.000
OPUNC06G05940 Oryza punctata OPUNC06G05940 I 0.000
OPUNC06G24250 Oryza punctata OPUNC06G24250 I 0.000
OPUNC08G18850 Oryza punctata OPUNC08G18850 I 0.000
orange1.1g001728m.g Citrus sinensis orange1.1g001728m.g I 0.000
orange1.1g001969m.g Citrus sinensis orange1.1g001969m.g I 0.000
orange1.1g002390m.g Citrus sinensis orange1.1g002390m.g I 0.000
ORGLA06G0056900 Oryza glaberrima ORGLA06G0056900 I 0.000
ORGLA06G0221800 Oryza glaberrima ORGLA06G0221800 I 0.000
ORGLA08G0183900 Oryza glaberrima ORGLA08G0183900 I 0.000
ORUFI06G06450 Oryza rufipogon ORUFI06G06450 I 0.000
ORUFI06G28510 Oryza rufipogon ORUFI06G28510 I 0.000
ORUFI08G23260 Oryza rufipogon ORUFI08G23260 I 0.000
OS06G0196700 Oryza sativa OS06G0196700 I 0.000
OS06G0702600 Oryza sativa OS06G0702600 I 0.000
OS08G0520550 Oryza sativa OS08G0520550 I 0.000
Pavir.Cb00190 Panicum virgatum Pavir.Cb00190 I 0.000
Pavir.Da01885 Panicum virgatum Pavir.Da01885 I 0.000
Pavir.Db00232 Panicum virgatum Pavir.Db00232 I 0.000
Pavir.Db01975 Panicum virgatum Pavir.Db01975 I 0.000
Pavir.J00164 Panicum virgatum Pavir.J00164 I 0.000
PDK_20s1410001g001 Phoenix dactylifera PDK_20s1410001g001 I 0.000
PGSC0003DMG400002392 Solanum tuberosum PGSC0003DMG400002392 I 0.000
PGSC0003DMG400003771 Solanum tuberosum PGSC0003DMG400003771 I 0.000
PGSC0003DMG401018664 Solanum tuberosum PGSC0003DMG401018664 I 0.000
PK17611.1 Cannabis sativa PK17611.1 I 0.000
PK20354.1 Cannabis sativa PK20354.1 I 0.000
PK26077.1 Cannabis sativa PK26077.1 I 0.000
Pm008963 Prunus mume Pm008963 I 0.000
Pm010467 Prunus mume Pm010467 I 0.000
Pm027119 Prunus mume Pm027119 I 0.000
POPTR_0006s07740 Populus trichocarpa POPTR_0006s07740 I 0.000
POPTR_0006s14070 Populus trichocarpa POPTR_0006s14070 I 0.000
POPTR_0017s01870 Populus trichocarpa POPTR_0017s01870 I 0.000
POPTR_0018s07420 Populus trichocarpa POPTR_0018s07420 I 0.000
PRUPE_ppa000479mg Prunus persica PRUPE_ppa000479mg I 0.000
PRUPE_ppa000708mg Prunus persica PRUPE_ppa000708mg I 0.000
PRUPE_ppa001179mg Prunus persica PRUPE_ppa001179mg I 0.000
SapurV1A.0001s2530 Salix purpurea SapurV1A.0001s2530 I 0.000
SapurV1A.0030s0180 Salix purpurea SapurV1A.0030s0180 I 0.000
SapurV1A.0147s0210 Salix purpurea SapurV1A.0147s0210 I 0.000
SapurV1A.0289s0180 Salix purpurea SapurV1A.0289s0180 I 0.000
SapurV1A.0355s0030 Salix purpurea SapurV1A.0355s0030 I 0.000
SapurV1A.0521s0030 Salix purpurea SapurV1A.0521s0030 I 0.000
Sb04g003240 Sorghum bicolor Sb04g003240 I 0.000
Sb06g031900 Sorghum bicolor Sb06g031900 I 0.000
Sb07g027080 Sorghum bicolor Sb07g027080 I 0.000
Sb08g021460 Sorghum bicolor Sb08g021460 I 0.000
Sb10g006440 Sorghum bicolor Sb10g006440 I 0.000
SELMODRAFT_179736 Selaginella moellendorffii SELMODRAFT_179736 I 0.000
SELMODRAFT_451392 Selaginella moellendorffii SELMODRAFT_451392 I 0.000
Si005741m.g Setaria italica Si005741m.g I 0.000
Si005753m.g Setaria italica Si005753m.g I 0.000
Si013155m.g Setaria italica Si013155m.g I 0.000
Solyc02g037530.2 Solanum lycopersicum Solyc02g037530.2 I 0.000
Solyc04g081240.2 Solanum lycopersicum Solyc04g081240.2 I 0.000
Solyc07g042260.2 Solanum lycopersicum Solyc07g042260.2 I 0.000
TCM_017488 Theobroma cacao TCM_017488 I 0.000
TCM_029410 Theobroma cacao TCM_029410 I 0.000
TCM_037484 Theobroma cacao TCM_037484 I 0.000
TCM_039715 Theobroma cacao TCM_039715 I 0.000
Thhalv10006635m.g Eutrema salsugineum Thhalv10006635m.g I 0.000
Thhalv10012513m.g Eutrema salsugineum Thhalv10012513m.g I 0.000
Traes_2AL_05ECC440C Triticum aestivum Traes_2AL_05ECC440C I 0.000
Traes_2BL_E322FD546 Triticum aestivum Traes_2BL_E322FD546 I 0.000
Traes_2DL_FBE64209C Triticum aestivum Traes_2DL_FBE64209C I 0.000
Traes_7AS_582E3076D Triticum aestivum Traes_7AS_582E3076D I 0.000
Traes_7BL_66296695F Triticum aestivum Traes_7BL_66296695F I 0.000
Traes_7BS_3FD792335 Triticum aestivum Traes_7BS_3FD792335 I 0.000
Traes_7BS_F44A273F8 Triticum aestivum Traes_7BS_F44A273F8 I 0.000
Traes_7DL_C89614A4D Triticum aestivum Traes_7DL_C89614A4D I 0.000
Traes_7DS_1948388F8 Triticum aestivum Traes_7DS_1948388F8 I 0.000
Traes_7DS_7375BED72 Triticum aestivum Traes_7DS_7375BED72 I 0.000
TRIUR3_33045 Triticum urartu TRIUR3_33045 I 0.000
VIT_11s0016g00640 Vitis vinifera VIT_11s0016g00640 I 0.000
VIT_11s0065g00310 Vitis vinifera VIT_11s0065g00310 I 0.000