D918_08129 (Trichuris suis)
Nuclear receptor

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00105 (zf-C4) IPR001628 D918_08129 T308441_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
NR2E1
M02394_2.00 		Homo sapiens
NGAGGTCARN
NYTGACCTCN		 PBM
Weirauch et al.(2014)
pTH6281 		0.853 0.657
Nr2e1
M00814_2.00 		Mus musculus
NNNGTYRNNN
NNNYRACNNN		 PBM
Weirauch et al.(2013)
pTH2936 		0.853 0.657
A1YGC6_PANPA
M02421_2.00 		Pan paniscus
NNGTCANNN
NNNTGACNN		 PBM
Weirauch et al.(2014)
pTH5561 		0.853 0.657
NR2E1
M03364_2.00 		Homo sapiens
WDAAGTCAA
TTGACTTHW		 SELEX
Jolma et al.(2013)
NR2E1_1 		0.853 0.657
NR2E1
M03365_2.00 		Homo sapiens
RARTCAWDAAGTCA
TGACTTHWTGAYTY		 SELEX
Jolma et al.(2013)
NR2E1_2 		0.853 0.657
Nr2e1
M03427_2.00 		Mus musculus
WDAAGTCAW
WTGACTTHW		 SELEX
Jolma et al.(2013)
Nr2e1_1 		0.853 0.657
Nr2e1
M03428_2.00 		Mus musculus
RRGTCAWDAAGTCA
TGACTTHWTGACYY		 SELEX
Jolma et al.(2013)
Nr2e1_2 		0.853 0.657
NR2E1
M05585_2.00 		Homo sapiens
NNAAGTCAN
NTGACTTNN		 SELEX
Yin et al.(2017)
NR2E1_FL_HT-SELEX 		0.853 0.657
NR2E1
M05586_2.00 		Homo sapiens
NDAAGTCAN
NTGACTTHN		 SELEX
Yin et al.(2017)
NR2E1_FL_Methyl-HT-SELEX 		0.853 0.657
svp
M06423_2.00 		Drosophila melanogaster
ARGGTCA
TGACCYK		 B1H
Zhu et al.(2011)
svp_SANGER_5_FBgn0003651 		0.802 0.629
Q969A9_BOMMO
M02410_2.00 		Bombyx mori
VRGGTCDN
NHGACCYB		 PBM
Weirauch et al.(2014)
pTH5516 		0.798 0.600
O77476_BRUPA
M02422_2.00 		Brugia pahangi
NRGGTCAN
NTGACCYN		 PBM
Weirauch et al.(2014)
pTH6019 		0.763 0.557
Nr2f2
M00184_2.00 		Mus musculus
RRGGTCAN
NTGACCYY		 PBM
Badis et al.(2009)
Nr2f2_2192 		0.747 0.614
NR2F2
M08157_2.00 		Homo sapiens
NNAAGGTCANN
NNTGACCTTNN		 ChIP-seq
Mathelier et al.(2014)
MA1111.1 		0.747 0.614
NR2F2
M08223_2.00 		Homo sapiens
AAAGGTCA
TGACCTTT		 ChIP-seq
Contrino et al.(2012)
Mv102 		0.747 0.614
NR2F2
M08224_2.00 		Homo sapiens
GGKCARAGGB
VCCTYTGMCC		 ChIP-seq
Contrino et al.(2012)
Mv104 		0.747 0.614
NR2F2
M09293_2.00 		Homo sapiens
NARRGGTCADRDN
NHYHTGACCYYTN		 Misc
Kulakovskiy et al.(2013)
COT2_HUMAN.H11MO.0.A 		0.747 0.614
Nr2f2
M09325_2.00 		Mus musculus
NNHRAGGTCANVD
HBNTGACCTYDNN		 Misc
Kulakovskiy et al.(2013)
COT2_MOUSE.H11MO.0.A 		0.747 0.614
NR2F2
M11180_2.00 		Homo sapiens
WRRKKTCAARGGYTCA
TGARCCYTTGAMMYYW		 Transfac
Matys et al.(2006)
V$ARP1_01 		0.747 0.614
NR2F2
M11181_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$COUPTF2_Q6 		0.747 0.614
For this family, TFs with SR scores > 0.745 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
D918_08129 Nuclear receptor 10 79

Links

Other Nuclear receptor family TFs
Other Trichuris suis TFs

Invalid Input OrderBy

419 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action