GPLIN_000282900 (Globodera pallida)
Nuclear receptor

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00105 (zf-C4) IPR001628 GPLIN_000282900 T308665_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
nhr-232
M00700_2.00 		Caenorhabditis elegans
NNTNTDWYN
NRWHANANN		 PBM
Narasimhan et al.(2015)
pTH10647 		0.801 0.471
nhr-142
M00703_2.00 		Caenorhabditis elegans
RGTCACAR
YTGTGACY		 PBM
Narasimhan et al.(2015)
pTH10714 		0.750 0.557
For this family, TFs with SR scores > 0.745 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
GPLIN_000282900 Nuclear receptor 52 121

Links

Other Nuclear receptor family TFs
Other Globodera pallida TFs

52 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Minc14668 Meloidogyne incognita Minc14668 I 0.978
MhA1_Contig1192.frz3.gene3 Meloidogyne hapla MhA1_Contig1192.frz3.gene3 I 0.973
augustus_masked-nMf.1.1.scaf21762-processed-gene-0.0 Meloidogyne floridensis augustus_masked-nMf.1.1.scaf21762-processed-gene-0.0 I 0.972
maker-nMf.1.1.scaf01765-snap-gene-0.13 Meloidogyne floridensis maker-nMf.1.1.scaf01765-snap-gene-0.13 I 0.933
ACOC_0000492601 Angiostrongylus costaricensis ACOC_0000492601 I 0.915
L596_g14586 Steinernema carpocapsae L596_g14586 I 0.910
L898_g12798 Steinernema monticolum L898_g12798 I 0.885
SMUV_0000241501 Syphacia muris SMUV_0000241501 N 0.882
NBR_0001218401 Nippostrongylus brasiliensis NBR_0001218401 I 0.876
L889_g6696 Steinernema feltiae L889_g6696 I 0.876
L892_g14834 Steinernema scapterisci L892_g14834 N 0.869
ANCCEY_13226 Ancylostoma ceylanicum ANCCEY_13226 I 0.867
HCOI00483700 Haemonchus contortus HCOI00483700 I 0.867
HPLM_0000277901 Haemonchus placei HPLM_0000277901 I 0.867
scaffold31-EXSNAP2012.20 Pristionchus exspectatus scaffold31-EXSNAP2012.20 I 0.862
SMUV_0000241401 Syphacia muris SMUV_0000241401 I 0.844
BXY_0690000 Bursaphelenchus xylophilus BXY_0690000 I 0.835
SVUK_0002058501 Strongylus vulgaris SVUK_0002058501 I 0.832
NBR_0001834701 Nippostrongylus brasiliensis NBR_0001834701 I 0.832
nhr-102 Caenorhabditis elegans WBGene00003692 I 0.829
EVEC_0000956701 Enterobius vermicularis EVEC_0000956701 I 0.827
CJA09697 Caenorhabditis japonica CJA09697 I 0.819
L898_g3512 Steinernema monticolum L898_g3512 I 0.818
CBN13569 Caenorhabditis brenneri CBN13569 I 0.816
CRE08691 Caenorhabditis remanei CRE08691 I 0.813
BXY_1091100 Bursaphelenchus xylophilus BXY_1091100 N 0.811
nhr-178 Caenorhabditis elegans WBGene00017510 I 0.809
L892_g8137 Steinernema scapterisci L892_g8137 N 0.808
CBG06601 Caenorhabditis briggsae CBG06601 I 0.807
CBG06611 Caenorhabditis briggsae CBG06611 I 0.807
CRE18430 Caenorhabditis remanei CRE18430 I 0.806
CBG20729 Caenorhabditis briggsae CBG20729 I 0.802
nhr-232 Caenorhabditis elegans WBGene00012494 D 0.801
nhr-213 Caenorhabditis elegans WBGene00011520 I 0.801
CRE30948 Caenorhabditis remanei CRE30948 I 0.797
CRE15675 Caenorhabditis remanei CRE15675 I 0.792
CBN23838 Caenorhabditis brenneri CBN23838 I 0.792
CRE15644 Caenorhabditis remanei CRE15644 I 0.792
CBG09567 Caenorhabditis briggsae CBG09567 I 0.789
CBG22870 Caenorhabditis briggsae CBG22870 I 0.789
L892_g2782 Steinernema scapterisci L892_g2782 I 0.785
L596_g14588 Steinernema carpocapsae L596_g14588 I 0.782
CBN18264 Caenorhabditis brenneri CBN18264 I 0.775
PPA14290 Pristionchus pacificus PPA14290 I 0.764
CBN00434 Caenorhabditis brenneri CBN00434 I 0.758
nhr-170 Caenorhabditis elegans WBGene00008309 I 0.753
CBG20727 Caenorhabditis briggsae CBG20727 I 0.753
nhr-142 Caenorhabditis elegans WBGene00018430 D 0.750
CBG04789 Caenorhabditis briggsae CBG04789 I 0.749
SVUK_0001603001 Strongylus vulgaris SVUK_0001603001 I 0.746
CBN21486 Caenorhabditis brenneri CBN21486 I 0.745
CBN28290 Caenorhabditis brenneri CBN28290 I 0.745