GPLIN_000284100 (Globodera pallida)
Nuclear receptor

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00105 (zf-C4) IPR001628 GPLIN_000284100 T308666_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
nhr-49
M02413_2.00 		Caenorhabditis elegans
NNNNWNHAN
NTDNWNNNN		 PBM
Weirauch et al.(2014)
pTH5891 		0.887 0.586
nhr-1
M00686_2.00 		Caenorhabditis elegans
ARTGATCA
TGATCAYT		 PBM
Narasimhan et al.(2015)
pTH9322 		0.849 0.471
For this family, TFs with SR scores > 0.745 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
GPLIN_000284100 Nuclear receptor 123 192

Links

Other Nuclear receptor family TFs
Other Globodera pallida TFs

208 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Minc17538 Meloidogyne incognita Minc17538 I 0.992
Minc13747 Meloidogyne incognita Minc13747 I 0.992
MhA1_Contig817.frz3.gene1 Meloidogyne hapla MhA1_Contig817.frz3.gene1 I 0.992
BXY_1375200 Bursaphelenchus xylophilus BXY_1375200 I 0.989
OESDEN_04341 Oesophagostomum dentatum OESDEN_04341 I 0.988
HCOI00592600 Haemonchus contortus HCOI00592600 I 0.987
TCLT_0000612301 Thelazia callipaeda TCLT_0000612301 I 0.984
CBN11572 Caenorhabditis brenneri CBN11572 I 0.982
L892_g4134 Steinernema scapterisci L892_g4134 I 0.982
L893_g21283 Steinernema glaseri L893_g21283 I 0.982
ASU_13587 Ascaris suum ASU_13587 I 0.982
nhr-35 Caenorhabditis elegans WBGene00003628 I 0.982
DME_0000747901 Dracunculus medinensis DME_0000747901 I 0.982
L898_g23058 Steinernema monticolum L898_g23058 I 0.982
L596_g23123 Steinernema carpocapsae L596_g23123 I 0.982
L889_g11570 Steinernema feltiae L889_g11570 I 0.982
CRE00809 Caenorhabditis remanei CRE00809 I 0.981
WBGene00240560 Onchocerca volvulus WBGene00240560 I 0.981
CJA16040 Caenorhabditis japonica CJA16040 I 0.981
nOo.2.0.1.g03859 Onchocerca ochengi nOo.2.0.1.g03859 I 0.981
CBG14485 Caenorhabditis briggsae CBG14485 I 0.981
nDi.2.2.2.g09348 Dirofilaria immitis nDi.2.2.2.g09348 I 0.980
LOAG_08636 Loa loa LOAG_08636 I 0.980
nLs.2.1.2.g04051 Litomosoides sigmodontis nLs.2.1.2.g04051 I 0.980
EEL_0000204901 Elaeophora elaphi EEL_0000204901 I 0.979
nAv.1.0.1.g09196 Acanthocheilonema viteae nAv.1.0.1.g09196 I 0.979
PPA22443 Pristionchus pacificus PPA22443 I 0.955
scaffold107-EXSNAP2012.33 Pristionchus exspectatus scaffold107-EXSNAP2012.33 I 0.955
BXY_0631600 Bursaphelenchus xylophilus BXY_0631600 I 0.916
MhA1_Contig2491.frz3.gene4 Meloidogyne hapla MhA1_Contig2491.frz3.gene4 I 0.911
SSTP_0001170700 Strongyloides stercoralis SSTP_0001170700 I 0.904
CRE25378 Caenorhabditis remanei CRE25378 I 0.904
nhr-10 Caenorhabditis elegans WBGene00003609 I 0.903
CBN20518 Caenorhabditis brenneri CBN20518 I 0.902
CBG16594 Caenorhabditis briggsae CBG16594 I 0.902
SSTP_0000546600 Strongyloides stercoralis SSTP_0000546600 I 0.893
PTRK_0001312000 Parastrongyloides trichosuri PTRK_0001312000 I 0.893
L898_g22454 Steinernema monticolum L898_g22454 I 0.892
SPAL_0000490500 Strongyloides papillosus SPAL_0000490500 I 0.890
SVE_1951500 Strongyloides venezuelensis SVE_1951500 I 0.890
TCLT_0000461101 Thelazia callipaeda TCLT_0000461101 I 0.889
ACAC_0000711701 Angiostrongylus cantonensis ACAC_0000711701 I 0.889
DICVIV_00957 Dictyocaulus viviparus DICVIV_00957 I 0.889
HCOI00618700 Haemonchus contortus HCOI00618700 I 0.889
HCOI00601000 Haemonchus contortus HCOI00601000 I 0.888
ANCCAN_17081 Ancylostoma caninum ANCCAN_17081 I 0.888
ANCCAN_14103 Ancylostoma caninum ANCCAN_14103 I 0.888
HPLM_0000564201 Haemonchus placei HPLM_0000564201 I 0.888
CRE08259 Caenorhabditis remanei CRE08259 I 0.887
CBG03844 Caenorhabditis briggsae CBG03844 I 0.887
ASU_03870 Ascaris suum ASU_03870 I 0.887
PEQ_0000391501 Parascaris equorum PEQ_0000391501 I 0.887
L596_g23777 Steinernema carpocapsae L596_g23777 I 0.887
CBN18198 Caenorhabditis brenneri CBN18198 I 0.887
CBN20749 Caenorhabditis brenneri CBN20749 I 0.887
L893_g25227 Steinernema glaseri L893_g25227 I 0.887
nhr-49 Caenorhabditis elegans WBGene00003639 D 0.887
GPLIN_001175700 Globodera pallida GPLIN_001175700 I 0.887
LOAG_08615 Loa loa LOAG_08615 I 0.886
NECAME_00872 Necator americanus NECAME_00872 I 0.886
ALUE_0002179401 Ascaris lumbricoides ALUE_0002179401 I 0.886
ASU_12501 Ascaris suum ASU_12501 I 0.886
BXY_1057600 Bursaphelenchus xylophilus BXY_1057600 I 0.881
L892_g8671 Steinernema scapterisci L892_g8671 I 0.881
nOo.2.0.1.g02345 Onchocerca ochengi nOo.2.0.1.g02345 I 0.881
L596_g12276 Steinernema carpocapsae L596_g12276 I 0.881
WBGene00236987 Onchocerca volvulus WBGene00236987 I 0.881
L889_g7780 Steinernema feltiae L889_g7780 I 0.881
EVEC_0001313601 Enterobius vermicularis EVEC_0001313601 I 0.880
SSTP_0000145700 Strongyloides stercoralis SSTP_0000145700 I 0.878
DME_0000591901 Dracunculus medinensis DME_0000591901 I 0.878
PTRK_0000720500 Parastrongyloides trichosuri PTRK_0000720500 I 0.878
SVE_1799100 Strongyloides venezuelensis SVE_1799100 I 0.876
scaffold605-EXSNAP2012.9 Pristionchus exspectatus scaffold605-EXSNAP2012.9 I 0.876
SPAL_0000841700 Strongyloides papillosus SPAL_0000841700 I 0.876
Bm4980 Brugia malayi Bm4980 I 0.873
BTMF_0000217201 Brugia timori BTMF_0000217201 I 0.873
RSKR_0001067400 Rhabditophanes kr3021 RSKR_0001067400 I 0.872
SPAL_0001238400 Strongyloides papillosus SPAL_0001238400 I 0.871
SVE_0697700 Strongyloides venezuelensis SVE_0697700 I 0.871
SMUV_0000708401 Syphacia muris SMUV_0000708401 I 0.868
L596_g12321 Steinernema carpocapsae L596_g12321 I 0.866
SPAL_0001099500 Strongyloides papillosus SPAL_0001099500 I 0.866
PTRK_0001020800 Parastrongyloides trichosuri PTRK_0001020800 I 0.866
L889_g29879 Steinernema feltiae L889_g29879 I 0.866
SVE_0858700 Strongyloides venezuelensis SVE_0858700 I 0.866
L893_g3010 Steinernema glaseri L893_g3010 I 0.866
L898_g2764 Steinernema monticolum L898_g2764 I 0.866
SSTP_0000769100 Strongyloides stercoralis SSTP_0000769100 I 0.866
EVEC_0000027301 Enterobius vermicularis EVEC_0000027301 I 0.865
L893_g13285 Steinernema glaseri L893_g13285 I 0.865
L596_g11035 Steinernema carpocapsae L596_g11035 I 0.864
BTMF_0001388101 Brugia timori BTMF_0001388101 I 0.864
nDi.2.2.2.g02318 Dirofilaria immitis nDi.2.2.2.g02318 I 0.864
OFLC_0001450101 Onchocerca flexuosa OFLC_0001450101 I 0.864
L889_g17247 Steinernema feltiae L889_g17247 I 0.864
TCLT_0000399401 Thelazia callipaeda TCLT_0000399401 I 0.864
nOo.2.0.1.g01530 Onchocerca ochengi nOo.2.0.1.g01530 I 0.864
Bm5319 Brugia malayi Bm5319 I 0.864
DME_0000693601 Dracunculus medinensis DME_0000693601 I 0.864
L898_g26357 Steinernema monticolum L898_g26357 I 0.864
LOAG_00300 Loa loa LOAG_00300 I 0.864
ACAC_0001297301 Angiostrongylus cantonensis ACAC_0001297301 I 0.855
WBGene00241993 Onchocerca volvulus WBGene00241993 I 0.854
CBG01866 Caenorhabditis briggsae CBG01866 I 0.849
CRE03310 Caenorhabditis remanei CRE03310 I 0.849
CBN19235 Caenorhabditis brenneri CBN19235 I 0.849
CJA13458 Caenorhabditis japonica CJA13458 I 0.849
ANCCEY_01961 Ancylostoma ceylanicum ANCCEY_01961 I 0.849
HCOI01554200 Haemonchus contortus HCOI01554200 I 0.849
HPBE_0000837301 Heligmosomoides bakeri HPBE_0000837301 I 0.849
nhr-1 Caenorhabditis elegans WBGene00003600 D 0.849
CGOC_0000474501 Cylicostephanus goldi CGOC_0000474501 N 0.846
DICVIV_09815 Dictyocaulus viviparus DICVIV_09815 I 0.843
ACOC_0000700901 Angiostrongylus costaricensis ACOC_0000700901 I 0.843
PTRK_0000861400 Parastrongyloides trichosuri PTRK_0000861400 I 0.842
GPLIN_000337500 Globodera pallida GPLIN_000337500 I 0.833
SPAL_0001637600 Strongyloides papillosus SPAL_0001637600 I 0.832
SSTP_0000055100 Strongyloides stercoralis SSTP_0000055100 I 0.832
scaffold598-EXSNAP2012.5 Pristionchus exspectatus scaffold598-EXSNAP2012.5 I 0.832
SVE_0429000 Strongyloides venezuelensis SVE_0429000 I 0.832
PTRK_0000994100 Parastrongyloides trichosuri PTRK_0000994100 I 0.828
PPA06637 Pristionchus pacificus PPA06637 I 0.828
BTMF_0000941401 Brugia timori BTMF_0000941401 I 0.826
scaffold251-EXSNAP2012.44 Pristionchus exspectatus scaffold251-EXSNAP2012.44 I 0.826
LOAG_16377 Loa loa LOAG_16377 I 0.826
WUBG_17449 Wuchereria bancrofti WUBG_17449 N 0.826
scaffold826-EXSNAP2012.10 Pristionchus exspectatus scaffold826-EXSNAP2012.10 I 0.826
nRc.2.0.1.g16639 Romanomermis culicivorax nRc.2.0.1.g16639 I 0.823
EEL_0000989101 Elaeophora elaphi EEL_0000989101 I 0.823
WBGene00240403 Onchocerca volvulus WBGene00240403 I 0.821
NECAME_11999 Necator americanus NECAME_11999 I 0.821
PTRK_0000480700 Parastrongyloides trichosuri PTRK_0000480700 I 0.817
SSTP_0001253400 Strongyloides stercoralis SSTP_0001253400 I 0.817
SVE_0146100 Strongyloides venezuelensis SVE_0146100 I 0.817
SPAL_0001712900 Strongyloides papillosus SPAL_0001712900 I 0.817
HCOI00891400 Haemonchus contortus HCOI00891400 I 0.815
ASIM_0001848201 Anisakis simplex ASIM_0001848201 N 0.812
RSKR_0000342500 Rhabditophanes kr3021 RSKR_0000342500 I 0.810
scaffold426-EXSNAP2012.35 Pristionchus exspectatus scaffold426-EXSNAP2012.35 I 0.810
CJA37776 Caenorhabditis japonica CJA37776 I 0.804
BXY_0599800 Bursaphelenchus xylophilus BXY_0599800 I 0.802
ANCCAN_08267 Ancylostoma caninum ANCCAN_08267 I 0.800
NBR_0001473401 Nippostrongylus brasiliensis NBR_0001473401 I 0.800
HPLM_0000769401 Haemonchus placei HPLM_0000769401 I 0.799
CBN19472 Caenorhabditis brenneri CBN19472 I 0.798
CBN18824 Caenorhabditis brenneri CBN18824 I 0.798
ASIM_0001423201 Anisakis simplex ASIM_0001423201 I 0.798
MhA1_Contig691.frz3.gene13 Meloidogyne hapla MhA1_Contig691.frz3.gene13 I 0.794
L889_g1557 Steinernema feltiae L889_g1557 I 0.794
ASU_03657 Ascaris suum ASU_03657 I 0.791
PEQ_0000722401 Parascaris equorum PEQ_0000722401 I 0.791
HCOI01292200 Haemonchus contortus HCOI01292200 I 0.790
L898_g9866 Steinernema monticolum L898_g9866 I 0.790
Minc11307 Meloidogyne incognita Minc11307 I 0.790
MhA1_Contig70.frz3.gene31 Meloidogyne hapla MhA1_Contig70.frz3.gene31 I 0.789
L892_g1520 Steinernema scapterisci L892_g1520 I 0.784
RSKR_0001171300 Rhabditophanes kr3021 RSKR_0001171300 I 0.784
L596_g11029 Steinernema carpocapsae L596_g11029 I 0.784
RSKR_0000600000 Rhabditophanes kr3021 RSKR_0000600000 N 0.782
PTRK_0000194200 Parastrongyloides trichosuri PTRK_0000194200 I 0.782
CBG23319 Caenorhabditis briggsae CBG23319 I 0.781
L893_g28857 Steinernema glaseri L893_g28857 I 0.781
PPA29597 Pristionchus pacificus PPA29597 I 0.781
CBG04204 Caenorhabditis briggsae CBG04204 I 0.780
augustus_masked-nMf.1.1.scaf06210-processed-gene-0.0 Meloidogyne floridensis augustus_masked-nMf.1.1.scaf06210-processed-gene-0.0 I 0.779
SSTP_0000408200 Strongyloides stercoralis SSTP_0000408200 I 0.779
CBG23318 Caenorhabditis briggsae CBG23318 I 0.779
nhr-68 Caenorhabditis elegans WBGene00003658 I 0.779
SVE_1749000 Strongyloides venezuelensis SVE_1749000 I 0.779
SPAL_0000231300 Strongyloides papillosus SPAL_0000231300 I 0.777
CRE26982 Caenorhabditis remanei CRE26982 I 0.777
ALUE_0000387101 Ascaris lumbricoides ALUE_0000387101 I 0.774
ASU_00859 Ascaris suum ASU_00859 I 0.774
ASIM_0001569801 Anisakis simplex ASIM_0001569801 I 0.773
scaffold1039-EXSNAP2012.5 Pristionchus exspectatus scaffold1039-EXSNAP2012.5 I 0.773
CBN30215 Caenorhabditis brenneri CBN30215 I 0.772
SVE_0639400 Strongyloides venezuelensis SVE_0639400 I 0.769
SPAL_0001213800 Strongyloides papillosus SPAL_0001213800 I 0.769
nhr-69 Caenorhabditis elegans WBGene00003659 I 0.766
CBN11344 Caenorhabditis brenneri CBN11344 I 0.766
CBG03848 Caenorhabditis briggsae CBG03848 I 0.766
CRE08089 Caenorhabditis remanei CRE08089 I 0.766
CBN14643 Caenorhabditis brenneri CBN14643 I 0.766
scaffold43-EXSNAP2012.41 Pristionchus exspectatus scaffold43-EXSNAP2012.41 I 0.765
Minc05752 Meloidogyne incognita Minc05752 I 0.764
Minc02318 Meloidogyne incognita Minc02318 I 0.764
L892_g4169 Steinernema scapterisci L892_g4169 I 0.763
CJA14599 Caenorhabditis japonica CJA14599 I 0.762
EVEC_0001195701 Enterobius vermicularis EVEC_0001195701 I 0.762
L889_g366 Steinernema feltiae L889_g366 I 0.760
L893_g5404 Steinernema glaseri L893_g5404 I 0.760
L892_g17832 Steinernema scapterisci L892_g17832 I 0.760
L596_g9904 Steinernema carpocapsae L596_g9904 I 0.760
L898_g7537 Steinernema monticolum L898_g7537 I 0.759
NECAME_08394 Necator americanus NECAME_08394 I 0.759
L889_g17254 Steinernema feltiae L889_g17254 I 0.758
SMUV_0000369301 Syphacia muris SMUV_0000369301 I 0.758
augustus_masked-nMf.1.1.scaf24822-processed-gene-0.0 Meloidogyne floridensis augustus_masked-nMf.1.1.scaf24822-processed-gene-0.0 I 0.757
PPA24481 Pristionchus pacificus PPA24481 I 0.755
scaffold552-EXSNAP2012.17 Pristionchus exspectatus scaffold552-EXSNAP2012.17 I 0.755
CRE30089 Caenorhabditis remanei CRE30089 I 0.754
scaffold488-EXSNAP2012.17 Pristionchus exspectatus scaffold488-EXSNAP2012.17 I 0.752
PTRK_0000862000 Parastrongyloides trichosuri PTRK_0000862000 I 0.751
SSTP_0001140400 Strongyloides stercoralis SSTP_0001140400 I 0.751
augustus_masked-nMf.1.1.scaf15936-processed-gene-0.0 Meloidogyne floridensis augustus_masked-nMf.1.1.scaf15936-processed-gene-0.0 I 0.751
augustus_masked-nMf.1.1.scaf15282-processed-gene-0.0 Meloidogyne floridensis augustus_masked-nMf.1.1.scaf15282-processed-gene-0.0 I 0.751
MhA1_Contig320.frz3.gene45 Meloidogyne hapla MhA1_Contig320.frz3.gene45 I 0.747