Hba_15323 (Heterorhabditis bacteriophora)
Nuclear receptor

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00105 (zf-C4) IPR001628 Hba_15323 T308749_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Hr51
M06432_2.00
Drosophila melanogaster
AMRDATCARARGW

WCYTYTGATHYKT
B1H
Zhu et al.(2011)
Hr51_SANGER_5_FBgn0034012
0.980 0.900
GA30480
M02409_2.00
Drosophila pseudoobscura
RAGATCAM

KTGATCTY
PBM
Weirauch et al.(2014)
pTH5877
0.980 0.886
NR2E3
M00373_2.00
Homo sapiens
NRAGATCAMN

NKTGATCTYN
PBM
Barrera et al.(2016)
NR2E3_REF
0.968 0.843
Nr2e3
M02708_2.00
Mus musculus
AAGCTTD

HAAGCTT
SELEX
Mathelier et al.(2014)
MA0164.1
0.968 0.843
Nr2e3
M09328_2.00
Mus musculus
NAAGTCAAAARKCA

TGMYTTTTGACTTN
Misc
Kulakovskiy et al.(2013)
NR2E3_MOUSE.H11MO.0.C
0.968 0.843
NR2E3
M00372_2.00
Homo sapiens
AAAGATCA

TGATCTTT
PBM
Barrera et al.(2016)
NR2E3_R77Q
0.968 0.829
NR2E3
M00370_2.00
Homo sapiens
NNNWRABATCANN

NNTGATVTYWNNN
PBM
Barrera et al.(2016)
NR2E3_R76Q
0.963 0.829
NR2E3
M00371_2.00
Homo sapiens
NNNHAATWTRTNN

NNAYAWATTDNNN
PBM
Barrera et al.(2016)
NR2E3_R76W
0.957 0.829
NR2E3
M00369_2.00
Homo sapiens
NGGGRTCAHN

NDTGAYCCCN
PBM
Barrera et al.(2016)
NR2E3_G56R
0.950 0.829
For this family, TFs with SR scores > 0.745 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Hba_15323 Nuclear receptor 110 180

Links

Other Nuclear receptor family TFs
Other Heterorhabditis bacteriophora TFs

171 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
TCM_030082 Theobroma cacao TCM_030082 I 0.000
mgf009119m Mimulus guttatus mgf009119m I 0.000
chr3.CM0155.80.nd Lotus japonicus chr3.CM0155.80.nd N 0.000
VIT_00s0532g00050 Vitis vinifera VIT_00s0532g00050 N 0.000
AMTR_s00029p00112130 Amborella trichopoda AMTR_s00029p00112130 N 0.000
Sb04g001200 Sorghum bicolor Sb04g001200 N 0.000
GSMUA_Achr7G04180_001 Musa acuminata GSMUA_Achr7G04180_001 N 0.000
GRMZM5G856837 Zea mays GRMZM5G856837 N 0.000
GRMZM2G314882 Zea mays GRMZM2G314882 N 0.000
PDK_20s1322801g004 Phoenix dactylifera PDK_20s1322801g004 N 0.000