CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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L596_g27130
(
Steinernema carpocapsae
)
Nuclear receptor
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00105 (zf-C4)
IPR001628
L596_g27130
T309000_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
nhr-3
M00687_2.00
Caenorhabditis elegans
NNHGDHYANN
NNTRDHCDNN
PBM
Narasimhan et al.(2015)
pTH9163
0.788
0.529
For this family, TFs with SR scores >
0.745
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
L596_g27130.t1
Nuclear receptor
51
121
SMCAVCSHDRDIGLHYGIPSCFGCKAFFRRTVREEKTYTCSKKGNCPIDKKCRNQCRACRYEMCLKKGMLL
L596_g27130.t2
Nuclear receptor
51
121
SMCAVCSHDRDIGLHYGIPSCFGCKAFFRRTVREEKTYTCSKKGNCPIDKKCRNQCRACRYEMCLKKGMLL
Links
Other
Nuclear receptor
family TFs
Other
Steinernema carpocapsae
TFs
46 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
L892_g19201
Steinernema scapterisci
L892_g19201
I
0.991
L889_g29246
Steinernema feltiae
L889_g29246
I
0.986
L898_g14928
Steinernema monticolum
L898_g14928
I
0.983
PPA20304
Pristionchus pacificus
PPA20304
I
0.828
GPLIN_000669000
Globodera pallida
GPLIN_000669000
I
0.811
maker-nMf.1.1.scaf07948-snap-gene-0.4
Meloidogyne floridensis
maker-nMf.1.1.scaf07948-snap-gene-0.4
I
0.808
MhA1_Contig217.frz3.gene7
Meloidogyne hapla
MhA1_Contig217.frz3.gene7
I
0.808
Minc01725
Meloidogyne incognita
Minc01725
I
0.808
snap_masked-nMf.1.1.scaf18837-processed-gene-0.2
Meloidogyne floridensis
snap_masked-nMf.1.1.scaf18837-processed-gene-0.2
I
0.808
Minc13525
Meloidogyne incognita
Minc13525
I
0.808
CJA13646
Caenorhabditis japonica
CJA13646
I
0.806
CBN19233
Caenorhabditis brenneri
CBN19233
I
0.792
nLs.2.1.2.g05858
Litomosoides sigmodontis
nLs.2.1.2.g05858
I
0.789
OESDEN_02943
Oesophagostomum dentatum
OESDEN_02943
I
0.788
L596_g25666
Steinernema carpocapsae
L596_g25666
I
0.788
HCOI02077900
Haemonchus contortus
HCOI02077900
I
0.788
nOo.2.0.1.g05901
Onchocerca ochengi
nOo.2.0.1.g05901
I
0.788
NECAME_04545
Necator americanus
NECAME_04545
I
0.788
nDi.2.2.2.g05078
Dirofilaria immitis
nDi.2.2.2.g05078
I
0.788
L892_g650
Steinernema scapterisci
L892_g650
I
0.788
nAv.1.0.1.g09896
Acanthocheilonema viteae
nAv.1.0.1.g09896
I
0.788
BTMF_0000273701
Brugia timori
BTMF_0000273701
I
0.788
CRE15289
Caenorhabditis remanei
CRE15289
I
0.788
LOAG_18352
Loa loa
LOAG_18352
I
0.788
nhr-3
Caenorhabditis elegans
WBGene00003602
D
0.788
TCNE_0001780601
Toxocara canis
TCNE_0001780601
I
0.788
TELCIR_01879
Teladorsagia circumcincta
TELCIR_01879
I
0.788
Bm14724
Brugia malayi
Bm14724
I
0.788
CBG07552
Caenorhabditis briggsae
CBG07552
I
0.788
WUBG_08518
Wuchereria bancrofti
WUBG_08518
I
0.788
WBGene00241910
Onchocerca volvulus
WBGene00241910
I
0.788
OFLC_0000776201
Onchocerca flexuosa
OFLC_0000776201
I
0.788
ANCCAN_18459
Ancylostoma caninum
ANCCAN_18459
I
0.788
ASU_10946
Ascaris suum
ASU_10946
I
0.788
SMUV_0000428701
Syphacia muris
SMUV_0000428701
I
0.786
TCLT_0000079701
Thelazia callipaeda
TCLT_0000079701
I
0.781
L893_g29555
Steinernema glaseri
L893_g29555
I
0.781
DICVIV_11945
Dictyocaulus viviparus
DICVIV_11945
I
0.779
ASIM_0001589901
Anisakis simplex
ASIM_0001589901
I
0.772
BXY_0011200
Bursaphelenchus xylophilus
BXY_0011200
I
0.766
DME_0000960901
Dracunculus medinensis
DME_0000960901
I
0.751
CBN07936
Caenorhabditis brenneri
CBN07936
I
0.751
CBN20828
Caenorhabditis brenneri
CBN20828
I
0.751
CRE06667
Caenorhabditis remanei
CRE06667
I
0.751
nhr-88
Caenorhabditis elegans
WBGene00003678
I
0.751