CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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L889_g6797
(
Steinernema feltiae
)
Nuclear receptor
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00105 (zf-C4)
IPR001628
L889_g6797
T309134_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
nhr-232
M00700_2.00
Caenorhabditis elegans
NNTNTDWYN
NRWHANANN
PBM
Narasimhan et al.(2015)
pTH10647
0.869
0.507
nhr-142
M00703_2.00
Caenorhabditis elegans
RGTCACAR
YTGTGACY
PBM
Narasimhan et al.(2015)
pTH10714
0.794
0.522
For this family, TFs with SR scores >
0.745
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
L889_g6797.t1
Nuclear receptor
13
80
GFCQVCGKPAHGIHFTIVSCRACAAFFRRSATDHDRFKCRRATEDCEVTRTNCRLCRWQRCKNLGMTT
Links
Other
Nuclear receptor
family TFs
Other
Steinernema feltiae
TFs
50 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
L889_g6798
Steinernema feltiae
L889_g6798
I
0.981
L889_g6799
Steinernema feltiae
L889_g6799
I
0.967
L898_g19019
Steinernema monticolum
L898_g19019
I
0.957
L893_g18993
Steinernema glaseri
L893_g18993
I
0.906
L898_g21763
Steinernema monticolum
L898_g21763
I
0.904
L898_g4013
Steinernema monticolum
L898_g4013
I
0.896
L892_g14817
Steinernema scapterisci
L892_g14817
I
0.878
CBG09567
Caenorhabditis briggsae
CBG09567
I
0.872
nhr-232
Caenorhabditis elegans
WBGene00012494
D
0.869
L898_g19014
Steinernema monticolum
L898_g19014
I
0.865
CBG15881
Caenorhabditis briggsae
CBG15881
I
0.863
CRE30948
Caenorhabditis remanei
CRE30948
I
0.862
HPLM_0000974301
Haemonchus placei
HPLM_0000974301
I
0.858
HCOI01190000
Haemonchus contortus
HCOI01190000
I
0.858
L898_g19021
Steinernema monticolum
L898_g19021
I
0.855
HCOI00483700
Haemonchus contortus
HCOI00483700
I
0.852
HPLM_0000277901
Haemonchus placei
HPLM_0000277901
I
0.852
ANCCEY_13226
Ancylostoma ceylanicum
ANCCEY_13226
I
0.852
SVUK_0002058501
Strongylus vulgaris
SVUK_0002058501
I
0.850
NBR_0001218401
Nippostrongylus brasiliensis
NBR_0001218401
I
0.849
L596_g14588
Steinernema carpocapsae
L596_g14588
I
0.844
L892_g2782
Steinernema scapterisci
L892_g2782
I
0.832
L892_g14818
Steinernema scapterisci
L892_g14818
I
0.827
L889_g6792
Steinernema feltiae
L889_g6792
I
0.822
L596_g14537
Steinernema carpocapsae
L596_g14537
I
0.822
L898_g4012
Steinernema monticolum
L898_g4012
I
0.821
CRE05044
Caenorhabditis remanei
CRE05044
I
0.812
L898_g32142
Steinernema monticolum
L898_g32142
N
0.809
ANCCEY_07914
Ancylostoma ceylanicum
ANCCEY_07914
I
0.805
L889_g8185
Steinernema feltiae
L889_g8185
I
0.797
CJA28065
Caenorhabditis japonica
CJA28065
I
0.795
scaffold31-EXSNAP2012.20
Pristionchus exspectatus
scaffold31-EXSNAP2012.20
I
0.795
nhr-142
Caenorhabditis elegans
WBGene00018430
D
0.794
CBN21486
Caenorhabditis brenneri
CBN21486
I
0.792
CBG09320
Caenorhabditis briggsae
CBG09320
I
0.792
CBN28290
Caenorhabditis brenneri
CBN28290
I
0.792
CRE31070
Caenorhabditis remanei
CRE31070
I
0.792
L898_g4015
Steinernema monticolum
L898_g4015
N
0.788
L898_g12799
Steinernema monticolum
L898_g12799
I
0.786
L898_g20180
Steinernema monticolum
L898_g20180
I
0.783
PEQ_0000560101
Parascaris equorum
PEQ_0000560101
I
0.781
L898_g4014
Steinernema monticolum
L898_g4014
N
0.777
SVUK_0001603001
Strongylus vulgaris
SVUK_0001603001
I
0.773
L889_g8187
Steinernema feltiae
L889_g8187
I
0.772
L889_g6800
Steinernema feltiae
L889_g6800
N
0.767
L898_g2944
Steinernema monticolum
L898_g2944
N
0.765
L898_g19012
Steinernema monticolum
L898_g19012
I
0.763
L596_g14536
Steinernema carpocapsae
L596_g14536
I
0.755
L596_g14532
Steinernema carpocapsae
L596_g14532
I
0.752
L898_g2943
Steinernema monticolum
L898_g2943
N
0.751