CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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L898_g33300
(
Steinernema monticolum
)
Nuclear receptor
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00105 (zf-C4)
IPR001628
L898_g33300
T309500_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Q6VU64_APLCA
M02423_2.00
Aplysia californica
NRGGTCAN
NTGACCYN
PBM
Weirauch et al.(2014)
pTH6055
0.795
0.514
Esr2
M01297_2.00
Mus musculus
NNRGGTCAH
DTGACCYNN
PBM
Lambert et al.(2019)
pTH3511
0.751
0.557
ESR2
M08154_2.00
Homo sapiens
RGGTCASNNWGNCCY
RGGNCWNNSTGACCY
ChIP-seq
Mathelier et al.(2014)
MA0258.2
0.751
0.557
ESR2
M09279_2.00
Homo sapiens
RGGKCRVRSYGMCCY
RGGKCRSYBYGMCCY
Misc
Kulakovskiy et al.(2013)
ESR2_HUMAN.H11MO.0.A
0.751
0.557
Esr2
M09311_2.00
Mus musculus
RGGKCRVRSYGMCCY
RGGKCRSYBYGMCCY
Misc
Kulakovskiy et al.(2013)
ESR2_MOUSE.H11MO.0.A
0.751
0.557
ESR2
M11146_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$ERBETA_Q5_01
0.751
0.557
ESR2
M11147_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$ERBETA_Q5
0.751
0.557
For this family, TFs with SR scores >
0.745
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
L898_g33300.t1
Nuclear receptor
29
101
SVCAVCGDPNPSGHHYGVISCEGCKGFFKRYTNAANKTFICRTGGNDCIINTQTRGKCQACRLTKCIEGGMVR
Links
Other
Nuclear receptor
family TFs
Other
Steinernema monticolum
TFs
60 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
L889_g2044
Steinernema feltiae
L889_g2044
N
0.929
L596_g16701
Steinernema carpocapsae
L596_g16701
I
0.858
ANCCAN_21154
Ancylostoma caninum
ANCCAN_21154
I
0.805
ANCDUO_09731
Ancylostoma duodenale
ANCDUO_09731
I
0.805
OESDEN_17917
Oesophagostomum dentatum
OESDEN_17917
I
0.805
ANCDUO_24991
Ancylostoma duodenale
ANCDUO_24991
I
0.805
CGOC_0000164901
Cylicostephanus goldi
CGOC_0000164901
I
0.800
LotgiG132166
Lottia gigantea
LotgiG132166
I
0.799
NECAME_12149
Necator americanus
NECAME_12149
I
0.799
Q6VU64_APLCA
Aplysia californica
Q6VU64_APLCA
D
0.795
BGLB011780
Biomphalaria glabrata
BGLB011780
I
0.795
NBR_0000818301
Nippostrongylus brasiliensis
NBR_0000818301
I
0.795
Ocbimv22000656m.g
Octopus bimaculoides
Ocbimv22000656m.g
I
0.795
CGI_10024100
Crassostrea gigas
CGI_10024100
I
0.795
HPLM_0000917101
Haemonchus placei
HPLM_0000917101
I
0.794
HCOI01895500
Haemonchus contortus
HCOI01895500
I
0.794
HPBE_0001049901
Heligmosomoides bakeri
HPBE_0001049901
I
0.789
ACAC_0000022201
Angiostrongylus cantonensis
ACAC_0000022201
I
0.786
ACOC_0000678401
Angiostrongylus costaricensis
ACOC_0000678401
I
0.786
DICVIV_00517
Dictyocaulus viviparus
DICVIV_00517
I
0.786
TTRE_0000500401
Trichuris trichiura
TTRE_0000500401
I
0.761
D918_00942
Trichuris suis
D918_00942
I
0.760
csin110418
Clonorchis sinensis
csin110418
I
0.758
T265_07403
Opisthorchis viverrini
T265_07403
I
0.758
LDEC009878
Leptinotarsa decemlineata
LDEC009878
I
0.755
ESR2
Vicugna pacos
ENSVPAG00000004869
I
0.751
L898_g34078
Steinernema monticolum
L898_g34078
I
0.751
ENSBTAP00000005899-D1
Bos grunniens
ENSBTAP00000005899-D1
I
0.751
ESR2
Tursiops truncatus
ENSTTRG00000000517
I
0.751
Myotis_brandtii_Esr2_10027148
Myotis brandtii
Myotis_brandtii_Esr2_10027148
I
0.751
ESR2
Tupaia belangeri
ENSTBEG00000001569
I
0.751
ESR2
Equus caballus
ENSECAG00000024947
I
0.751
ESR2
Dasypus novemcinctus
ENSDNOG00000013868
I
0.751
ESR2
Felis catus
ENSFCAG00000009636
I
0.751
ESR2
Homo sapiens
ENSG00000140009
D
0.751
ESR2
Loxodonta africana
ENSLAFG00000017799
I
0.751
ESR2
Gorilla gorilla
ENSGGOG00000003030
I
0.751
ENSCSAG00000013818
Chlorocebus sabaeus
ENSCSAG00000013818
I
0.751
ESR2
Cavia porcellus
ENSCPOG00000005703
I
0.751
ESR2
Bos taurus
ENSBTAG00000004498
I
0.751
ENSAMEG00000003956
Ailuropoda melanoleuca
ENSAMEG00000003956
I
0.751
ESR2
Canis familiaris
ENSCAFG00000015846
I
0.751
ESR2
Choloepus hoffmanni
ENSCHOG00000012987
I
0.751
ESR2
Callithrix jacchus
ENSCJAG00000019502
I
0.751
ENSSTOG00000015102
Ictidomys tridecemlineatus
ENSSTOG00000015102
I
0.751
ESR2
Microcebus murinus
ENSMICG00000013003
I
0.751
ESR2
Pteropus vampyrus
ENSPVAG00000017577
I
0.751
ESR2
Pan troglodytes
ENSPTRG00000006432
I
0.751
Esr2
Rattus norvegicus
ENSRNOG00000005343
I
0.751
ESR2
Sorex araneus
ENSSARG00000004498
I
0.751
ESR2
Sus scrofa
ENSSSCG00000005109
I
0.751
ENSPPYG00000005896
Pongo abelii
ENSPPYG00000005896
I
0.751
ENSPANG00000021094
Papio anubis
ENSPANG00000021094
I
0.751
ENSNLEG00000014123
Nomascus leucogenys
ENSNLEG00000014123
I
0.751
Esr2
Mus musculus
ENSMUSG00000021055
D
0.751
ENSMPUG00000006688
Mustela putorius furo
ENSMPUG00000006688
I
0.751
ENSOARG00000021148
Ovis aries
ENSOARG00000021148
I
0.751
ESR2
Otolemur garnettii
ENSOGAG00000007831
I
0.751
ESR2
Oryctolagus cuniculus
ENSOCUG00000005083
I
0.751
PTRK_0000641400
Parastrongyloides trichosuri
PTRK_0000641400
I
0.747