CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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L898_g4013
(
Steinernema monticolum
)
Nuclear receptor
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00105 (zf-C4)
IPR001628
L898_g4013
T309513_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
nhr-232
M00700_2.00
Caenorhabditis elegans
NNTNTDWYN
NRWHANANN
PBM
Narasimhan et al.(2015)
pTH10647
0.851
0.493
For this family, TFs with SR scores >
0.745
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
L898_g4013.t1
Nuclear receptor
14
81
GTCQVCGRPPHGIHFTVVACRACAAFFRRSIVDHPRYSCRSGLSDCDVKTSNCRYCRWIRCKQLGMTV
Links
Other
Nuclear receptor
family TFs
Other
Steinernema monticolum
TFs
26 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
L898_g19019
Steinernema monticolum
L898_g19019
I
0.916
L889_g6798
Steinernema feltiae
L889_g6798
I
0.909
L889_g6797
Steinernema feltiae
L889_g6797
I
0.896
L889_g6799
Steinernema feltiae
L889_g6799
I
0.895
ANCCEY_07914
Ancylostoma ceylanicum
ANCCEY_07914
I
0.872
L898_g21763
Steinernema monticolum
L898_g21763
I
0.865
HCOI01190000
Haemonchus contortus
HCOI01190000
I
0.865
HPLM_0000974301
Haemonchus placei
HPLM_0000974301
I
0.865
L892_g14817
Steinernema scapterisci
L892_g14817
I
0.862
scaffold31-EXSNAP2012.20
Pristionchus exspectatus
scaffold31-EXSNAP2012.20
I
0.856
CBG09567
Caenorhabditis briggsae
CBG09567
I
0.851
nhr-232
Caenorhabditis elegans
WBGene00012494
D
0.851
L898_g4012
Steinernema monticolum
L898_g4012
I
0.824
CRE30948
Caenorhabditis remanei
CRE30948
I
0.815
HPLM_0000277901
Haemonchus placei
HPLM_0000277901
I
0.808
ANCCEY_13226
Ancylostoma ceylanicum
ANCCEY_13226
I
0.808
HCOI00483700
Haemonchus contortus
HCOI00483700
I
0.808
NBR_0001218401
Nippostrongylus brasiliensis
NBR_0001218401
I
0.804
L893_g18993
Steinernema glaseri
L893_g18993
I
0.803
HPBE_0001646201
Heligmosomoides bakeri
HPBE_0001646201
I
0.775
HPLM_0000974401
Haemonchus placei
HPLM_0000974401
I
0.775
L898_g4015
Steinernema monticolum
L898_g4015
N
0.763
SVUK_0002058501
Strongylus vulgaris
SVUK_0002058501
I
0.761
L892_g2782
Steinernema scapterisci
L892_g2782
I
0.761
L898_g19012
Steinernema monticolum
L898_g19012
I
0.758
L596_g14588
Steinernema carpocapsae
L596_g14588
I
0.754