CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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nAv.1.0.1.g09196
(
Acanthocheilonema viteae
)
Nuclear receptor
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00105 (zf-C4)
IPR001628
nAv.1.0.1.g09196
T309702_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
nhr-49
M02413_2.00
Caenorhabditis elegans
NNNNWNHAN
NTDNWNNNN
PBM
Weirauch et al.(2014)
pTH5891
0.914
0.586
nhr-1
M00686_2.00
Caenorhabditis elegans
ARTGATCA
TGATCAYT
PBM
Narasimhan et al.(2015)
pTH9322
0.812
0.486
For this family, TFs with SR scores >
0.745
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
nAv.1.0.1.t09196-RA
Nuclear receptor
24
93
LLCTVCGDQATGRHYGTIACNGCKGFFRRTIRRGYRYTCRFSNNCNIDKHNRAVCRSCRYMRCVNAGMKI
Links
Other
Nuclear receptor
family TFs
Other
Acanthocheilonema viteae
TFs
229 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy