NBR_0001253301 (Nippostrongylus brasiliensis)
Nuclear receptor

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00105 (zf-C4) IPR001628 NBR_0001253301 T309729_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Hnf4
M03935_2.00
Drosophila melanogaster
RGGKCAAAGGTCA

TGACCTTTGMCCY
SELEX
Nitta et al.(2015)
Hnf4_1
0.976 0.671
Hnf4
M03936_2.00
Drosophila melanogaster
RGGKCAAAGTYCA

TGRACTTTGMCCY
SELEX
Nitta et al.(2015)
Hnf4_2
0.976 0.671
Hnf4
M03937_2.00
Drosophila melanogaster
RGTVCAAAGKTCR

YGAMCTTTGBACY
SELEX
Nitta et al.(2015)
Hnf4_3
0.976 0.671
Hnf4
M03938_2.00
Drosophila melanogaster
RTGRACTTTGGACY

RGTCCAAAGTYCAY
SELEX
Nitta et al.(2015)
Hnf4_4
0.976 0.671
Hnf4
M06428_2.00
Drosophila melanogaster
DKNKWSSNGGGGTCA

TGACCCCNSSWMNMH
B1H
Zhu et al.(2011)
Hnf4_SANGER_10_FBgn0004914
0.976 0.671
Hnf4
M06429_2.00
Drosophila melanogaster
GGGGTCAH

DTGACCCC
B1H
Zhu et al.(2011)
Hnf4_SANGER_5_FBgn0004914
0.976 0.671
Hnf4a
M00182_2.00
Mus musculus
NNRGKYMRNN

NNYKRMCYNN
PBM
Badis et al.(2009)
Hnf4a_2640
0.975 0.671
HNF4A
M03357_2.00
Homo sapiens
RWTGRACTTTGSACYB

VRGTSCAAAGTYCAWY
SELEX
Jolma et al.(2013)
HNF4A_1
0.975 0.671
HNF4A
M03358_2.00
Homo sapiens
RRGGKCAAAGTCCRBN

NVYGGACTTTGMCCYY
SELEX
Jolma et al.(2013)
HNF4A_2
0.975 0.671
HNF4A
M03359_2.00
Homo sapiens
NDTGGACTTTGDACYB

VRGTHCAAAGTCCAHN
SELEX
Jolma et al.(2013)
HNF4A_3
0.975 0.671
HNF4A
M03360_2.00
Homo sapiens
RRGGTCAAAGKTCA

TGAMCTTTGACCYY
SELEX
Jolma et al.(2013)
HNF4A_4
0.975 0.671
HNF4A
M03361_2.00
Homo sapiens
VRGGTCAAAGTCCANN

NNTGGACTTTGACCYB
SELEX
Jolma et al.(2013)
HNF4A_5
0.975 0.671
HNF4A
M03362_2.00
Homo sapiens
RRGTYCAAAGKTCAH

DTGAMCTTTGRACYY
SELEX
Jolma et al.(2013)
HNF4A_6
0.975 0.671
Hnf4a
M03426_2.00
Mus musculus
RRGGTCAAAGTCCANN

NNTGGACTTTGACCYY
SELEX
Jolma et al.(2013)
Hnf4a_1
0.975 0.671
HNF4A
M05573_2.00
Homo sapiens
RRGGTCAAAGGTCRN

NYGACCTTTGACCYY
SELEX
Yin et al.(2017)
HNF4A_eDBD_HT-SELEX_1
0.975 0.671
HNF4A
M05574_2.00
Homo sapiens
RRGGTCAAAGTCCAH

DTGGACTTTGACCYY
SELEX
Yin et al.(2017)
HNF4A_eDBD_HT-SELEX_2
0.975 0.671
HNF4A
M05575_2.00
Homo sapiens
RRGTCCAAAGGTCRN

NYGACCTTTGGACYY
SELEX
Yin et al.(2017)
HNF4A_eDBD_HT-SELEX_3
0.975 0.671
HNF4A
M05576_2.00
Homo sapiens
DTGGACTTTGGACYY

RRGTCCAAAGTCCAH
SELEX
Yin et al.(2017)
HNF4A_eDBD_HT-SELEX_4
0.975 0.671
HNF4A
M08219_2.00
Homo sapiens
VRGDBCAAAGKYCAN

NTGRMCTTTGVHCYB
ChIP-seq
Contrino et al.(2012)
Mv81
0.975 0.671
HNF4A
M08220_2.00
Homo sapiens
AGTCCA

TGGACT
ChIP-seq
Contrino et al.(2012)
Mv82
0.975 0.671
HNF4A
M09268_2.00
Homo sapiens
VRGKNCAAAGTYCA

TGRACTTTGNMCYB
Misc
Kulakovskiy et al.(2013)
HNF4A_HUMAN.H11MO.0.A
0.975 0.671
Hnf4a
M09308_2.00
Mus musculus
NRGKBCAAAGTYCA

TGRACTTTGVMCYN
Misc
Kulakovskiy et al.(2013)
HNF4A_MOUSE.H11MO.0.A
0.975 0.671
HNF4A
M09605_2.00
Homo sapiens
NNVRGDNCAAAGKYCA

TGRMCTTTGNHCYBNN
Misc
Heinz et al.(2010)
HepG2-HNF4a_GSE25021
0.975 0.671
HNF4A
M11105_2.00
Homo sapiens
VRGGNCAAAGKYCRB

VYGRMCTTTGNCCYB
Transfac
Matys et al.(2006)
V$HNF4_01_B
0.975 0.671
HNF4A
M11106_2.00
Homo sapiens
NNNRGDBYAAAGKBCANND

HNNTGVMCTTTRVHCYNNN
Transfac
Matys et al.(2006)
V$HNF4_01
0.975 0.671
HNF4A
M11107_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HNF4A_09
0.975 0.671
HNF4A
M11108_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HNF4A_10
0.975 0.671
HNF4A
M11109_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HNF4ALPHA_Q6
0.975 0.671
HNF4A
M11110_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HNF4A_Q3
0.975 0.671
HNF4A
M11111_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HNF4A_Q6_01
0.975 0.671
HNF4A
M11112_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HNF4_Q6_01
0.975 0.671
HNF4A
M11113_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HNF4_Q6_02
0.975 0.671
HNF4A
M11114_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HNF4_Q6_03
0.975 0.671
HNF4A
M11115_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HNF4_Q6_04
0.975 0.671
HNF4A
M05577_2.00
Homo sapiens
RRGGTCAAAGGTCRN

NYGACCTTTGACCYY
SELEX
Yin et al.(2017)
HNF4A_eDBD_Methyl-HT-SELEX_1
0.975 0.671
HNF4A
M05578_2.00
Homo sapiens
RRGGTCAAAGTCCRN

NYGGACTTTGACCYY
SELEX
Yin et al.(2017)
HNF4A_eDBD_Methyl-HT-SELEX_2
0.975 0.671
HNF4A
M05579_2.00
Homo sapiens
RRGTCCAAAGGTCRN

NYGACCTTTGGACYY
SELEX
Yin et al.(2017)
HNF4A_eDBD_Methyl-HT-SELEX_3
0.975 0.671
HNF4A
M05580_2.00
Homo sapiens
DTGGACTTTGGACYY

RRGTCCAAAGTCCAH
SELEX
Yin et al.(2017)
HNF4A_eDBD_Methyl-HT-SELEX_4
0.975 0.671
HNF4G
M08155_2.00
Homo sapiens
NVRGDNCAAAGKYCA

TGRMCTTTGNHCYBN
ChIP-seq
Mathelier et al.(2014)
MA0484.1
0.975 0.686
HNF4G
M09287_2.00
Homo sapiens
VRGDNCAAAGKYCA

TGRMCTTTGNHCYB
Misc
Kulakovskiy et al.(2013)
HNF4G_HUMAN.H11MO.0.B
0.975 0.686
Hnf4g
M09307_2.00
Mus musculus
VRGDNCAAAGKYCA

TGRMCTTTGNHCYB
Misc
Kulakovskiy et al.(2013)
HNF4G_MOUSE.H11MO.0.C
0.975 0.686
HNF4G
M11155_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HNF4G_01
0.975 0.686
HNF4G
M11156_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HNF4G_02
0.975 0.686
nhr-49
M02413_2.00
Caenorhabditis elegans
NNNNWNHAN

NTDNWNNNN
PBM
Weirauch et al.(2014)
pTH5891
0.771 0.586
For this family, TFs with SR scores > 0.745 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
NBR_0001253301-mRNA-1 Nuclear receptor 4 73

Links

Other Nuclear receptor family TFs
Other Nippostrongylus brasiliensis TFs

332 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
A1O1_02921 Capronia coronata A1O1_02921 I 0.000
A1O3_05114 Capronia epimyces A1O3_05114 I 0.000
A1O5_01432 Cladophialophora psammophila A1O5_01432 I 0.000
A1O7_08680 Cladophialophora yegresii A1O7_08680 I 0.000
A1O9_08083 Exophiala aquamarina A1O9_08083 I 0.000
AB00430.1 Alternaria brassicicola AB00430.1 I 0.000
ACRE_004420 Acremonium chrysogenum ACRE_004420 I 0.000
AUEXF2481DRAFT_650620 Aureobasidium subglaciale AUEXF2481DRAFT_650620 I 0.000
BAUCODRAFT_52987 Baudoinia compniacensis BAUCODRAFT_52987 I 0.000
BBA_01720 Beauveria bassiana BBA_01720 I 0.000
Bcin12g04210 Botrytis cinerea Bcin12g04210 I 0.000
BDDG_05274 Blastomyces dermatitidis BDDG_05274 I 0.000
ACLA_014320 Aspergillus clavatus CADACLAG00001095 I 0.000
CADAFLAG00007123 Aspergillus flavus CADAFLAG00007123 I 0.000
AFUA_5G11260 Aspergillus fumigatus CADAFUAG00006672 I 0.000
CADANGAG00000234 Aspergillus niger CADANGAG00000234 I 0.000
ANIA_00176 Aspergillus nidulans CADANIAG00002559 I 0.000
CADAORAG00008720 Aspergillus oryzae CADAORAG00008720 I 0.000
ATEG_07714 Aspergillus terreus CADATEAG00002169 I 0.000
NFIA_076010 Neosartorya fischeri CADNFIAG00006910 I 0.000
CCM_04145 Cordyceps militaris CCM_04145 I 0.000
CFIO01_05363 Colletotrichum fioriniae CFIO01_05363 I 0.000
CH063_08000 Colletotrichum higginsianum CH063_08000 I 0.000
CMQ_2849 Grosmannia clavigera CMQ_2849 I 0.000
Cob_10609 Colletotrichum orbiculare Cob_10609 I 0.000
COCC4DRAFT_135674 Bipolaris maydis COCC4DRAFT_135674 I 0.000
COCCADRAFT_83536 Bipolaris zeicola COCCADRAFT_83536 I 0.000
COCMIDRAFT_39011 Bipolaris oryzae COCMIDRAFT_39011 I 0.000
COCSADRAFT_216437 Bipolaris sorokiniana COCSADRAFT_216437 I 0.000
COCVIDRAFT_97406 Bipolaris victoriae COCVIDRAFT_97406 I 0.000
CPUR_05830 Claviceps purpurea CPUR_05830 I 0.000
CSUB01_07382 Colletotrichum sublineola CSUB01_07382 I 0.000
CTHT_0034490 Chaetomium thermophilum CTHT_0034490 I 0.000
DOTSEDRAFT_106841 Dothistroma septosporum DOTSEDRAFT_106841 I 0.000
EPUS_06161 Endocarpon pusillum EPUS_06161 I 0.000
estExt_fgenesh1_pg.C_chr_90446 Mycosphaerella graminicola estExt_fgenesh1_pg.C_chr_90446 I 0.000
estExt_fgeneshPB_pg.C_40297 Phycomyces blakesleeanus estExt_fgeneshPB_pg.C_40297 I 0.000
estExt_Genewise1.C_31450 Neurospora discreta estExt_Genewise1.C_31450 I 0.000
estExt_Genewise1Plus.C_150287 Cochliobolus heterostrophus C5 estExt_Genewise1Plus.C_150287 I 0.000
EURHEDRAFT_378605 Aspergillus ruber EURHEDRAFT_378605 I 0.000
e_gw1.18.217.1 Nectria haematococca e_gw1.18.217.1 I 0.000
e_gw1.3.1522.1 Cryphonectria parasitica e_gw1.3.1522.1 I 0.000
FFUJ_04434 Fusarium fujikuroi FFUJ_04434 I 0.000
fgenesh1_pm.00771_#_334 Aspergillus carbonarius fgenesh1_pm.00771_#_334 I 0.000
FGRRES_09565 Fusarium graminearum FGRRES_09565 I 0.000
FOXG_06266 Fusarium oxysporum FOXG_06266 I 0.000
FPSE_00936 Fusarium pseudograminearum FPSE_00936 I 0.000
FVEG_04118 Fusarium verticillioides FVEG_04118 I 0.000
G647_07655 Cladophialophora carrionii G647_07655 I 0.000
GGTG_08766 Gaeumannomyces graminis GGTG_08766 I 0.000
GLRG_02856 Colletotrichum graminicola GLRG_02856 I 0.000
GMDG_03864 Pseudogymnoascus destructans GMDG_03864 I 0.000
gw1.3.1964.1 Mucor circinelloides gw1.3.1964.1 I 0.000
H101_03359 Trichophyton interdigitale H101_03359 I 0.000
H102_03743 Trichophyton rubrum H102_03743 I 0.000
H105_03770 Trichophyton soudanense H105_03770 I 0.000
HCBG_04861 Histoplasma capsulatum HCBG_04861 I 0.000
HMPREF1120_00896 Exophiala dermatitidis HMPREF1120_00896 I 0.000
HMPREF1541_04069 Cyphellophora europaea HMPREF1541_04069 I 0.000
HMPREF1624_06960 Sporothrix schenckii HMPREF1624_06960 I 0.000
LEMA_P033710.1 Leptosphaeria maculans LEMA_P033710.1 I 0.000
M438DRAFT_316726 Aureobasidium pullulans M438DRAFT_316726 I 0.000
MAJ_05645 Metarhizium majus MAJ_05645 I 0.000
MAM_04386 Metarhizium album MAM_04386 I 0.000
MANI_004770 Metarhizium anisopliae MANI_004770 I 0.000
MAPG_05020 Magnaporthe poae MAPG_05020 I 0.000
MBR_02066 Metarhizium brunneum MBR_02066 I 0.000
MCYG_03654 Arthroderma otae MCYG_03654 I 0.000
MCYG_03654 Microsporum canis MCYG_03654 I 0.000
MGG_01840 Magnaporthe oryzae MGG_01840 I 0.000
MGU_07352 Metarhizium guizhouense MGU_07352 I 0.000
MGYG_03243 Microsporum gypseum MGYG_03243 I 0.000
MPH_09366 Macrophomina phaseolina MPH_09366 I 0.000
MYCFIDRAFT_216796 Pseudocercospora fijiensis MYCFIDRAFT_216796 I 0.000
Mycgr3G110870 Zymoseptoria tritici Mycgr3G110870 I 0.000
MYCTH_2298578 Myceliophthora thermophila MYCTH_2298578 I 0.000
sre Neurospora crassa NCU07728 D 0.000
NechaG32931 Fusarium solani NechaG32931 I 0.000
NEUTE1DRAFT_59972 Neurospora tetrasperma NEUTE1DRAFT_59972 I 0.000
OCS_04920 Ophiocordyceps sinensis OCS_04920 I 0.000
PAAG_02358 Paracoccidioides sp lutzii PAAG_02358 I 0.000
PABG_04857 Paracoccidioides brasiliensis PABG_04857 I 0.000
Pc21g05640 Penicillium chrysogenum Pc21g05640 I 0.000
PCH_Pc21g05640 Penicillium rubens PCH_Pc21g05640 I 0.000
PDE_07588 Penicillium oxalicum PDE_07588 I 0.000
PDIP_60900 Penicillium digitatum PDIP_60900 I 0.000
PEX1_086910 Penicillium expansum PEX1_086910 I 0.000
PFICI_05672 Pestalotiopsis fici PFICI_05672 I 0.000
PITC_054800 Penicillium italicum PITC_054800 I 0.000
PMAA_032870 Penicillium marneffei PMAA_032870 I 0.000
PMAA_032870 Talaromyces marneffei PMAA_032870 I 0.000
PODANS_6_1720 Podospora anserina PODANS_6_1720 I 0.000
PTRG_09160 Pyrenophora triticirepentis PTRG_09160 I 0.000
PTT_10383 Pyrenophora teres PTT_10383 I 0.000
PV04_09257 Capronia semiimmersa PV04_09257 I 0.000
PV06_07461 Exophiala oligosperma PV06_07461 I 0.000
PV07_00560 Cladophialophora immunda PV07_00560 I 0.000
PV08_09234 Exophiala spinifera PV08_09234 I 0.000
PV09_06780 Verruconis gallopava PV09_06780 I 0.000
PV10_05152 Exophiala mesophila PV10_05152 I 0.000
PV11_03095 Exophiala sideris PV11_03095 I 0.000
PVAR5_6896 Byssochlamys spectabilis PVAR5_6896 I 0.000
RO3G_05554 Rhizopus oryzae RO3G_05554 I 0.000
RO3G_14663 Rhizopus oryzae RO3G_14663 I 0.000
S40285_06937 Stachybotrys chlorohalonata S40285_06937 I 0.000
S40288_06641 Stachybotrys chartarum S40288_06641 I 0.000
SAPIO_CDS7310 Scedosporium apiospermum SAPIO_CDS7310 I 0.000
SBOR_4222 Sclerotinia borealis SBOR_4222 I 0.000
SEPMUDRAFT_72436 Sphaerulina musiva SEPMUDRAFT_72436 I 0.000
SETTUDRAFT_109283 Setosphaeria turcica SETTUDRAFT_109283 I 0.000
SMAC_04791 Sordaria macrospora SMAC_04791 I 0.000
SNOG_14013 Stagonospora nodorum SNOG_14013 I 0.000
SNOG_14013 Phaeosphaeria nodorum SNOG_14013 I 0.000
SPBR_06845 Sporothrix brasiliensis SPBR_06845 I 0.000
SS1G_08523 Sclerotinia sclerotiorum SS1G_08523 I 0.000
TEQG_01355 Trichophyton equinum TEQG_01355 I 0.000
TESG_05506 Trichophyton tonsurans TESG_05506 I 0.000
THITE_2114956 Thielavia terrestris THITE_2114956 I 0.000
TRIATDRAFT_174504 Trichoderma atroviride TRIATDRAFT_174504 I 0.000
TRIREDRAFT_4231 Trichoderma reesei TRIREDRAFT_4231 I 0.000
TRIVIDRAFT_192933 Trichoderma virens TRIVIDRAFT_192933 I 0.000
TSTA_064620 Talaromyces stipitatus TSTA_064620 I 0.000
U727_00431140131 Penicillium solitum U727_00431140131 I 0.000
UV8b_5933 Ustilaginoidea virens UV8b_5933 I 0.000
V499_07163 Pseudogymnoascus pannorum V499_07163 I 0.000
VDAG_00352 Verticillium dahliae VDAG_00352 I 0.000
VDBG_00739 Verticillium albo atrum VDBG_00739 I 0.000
VDBG_00739 Verticillium alfalfae VDBG_00739 I 0.000
VHEMI03353 Torrubiella hemipterigena VHEMI03353 I 0.000
X797_005876 Metarhizium robertsii X797_005876 I 0.000
Z517_01439 Fonsecaea pedrosoi Z517_01439 I 0.000
Z518_02954 Rhinocladiella mackenziei Z518_02954 I 0.000
Z519_11836 Cladophialophora bantiana Z519_11836 I 0.000