CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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nDi.2.2.2.g01137
(
Dirofilaria immitis
)
Nuclear receptor
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00105 (zf-C4)
IPR001628
nDi.2.2.2.g01137
T309749_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
NR2E1
M02394_2.00
Homo sapiens
NGAGGTCARN
NYTGACCTCN
PBM
Weirauch et al.(2014)
pTH6281
0.838
0.629
Nr2e1
M00814_2.00
Mus musculus
NNNGTYRNNN
NNNYRACNNN
PBM
Weirauch et al.(2013)
pTH2936
0.838
0.629
A1YGC6_PANPA
M02421_2.00
Pan paniscus
NNGTCANNN
NNNTGACNN
PBM
Weirauch et al.(2014)
pTH5561
0.838
0.629
NR2E1
M03364_2.00
Homo sapiens
WDAAGTCAA
TTGACTTHW
SELEX
Jolma et al.(2013)
NR2E1_1
0.838
0.629
NR2E1
M03365_2.00
Homo sapiens
RARTCAWDAAGTCA
TGACTTHWTGAYTY
SELEX
Jolma et al.(2013)
NR2E1_2
0.838
0.629
Nr2e1
M03427_2.00
Mus musculus
WDAAGTCAW
WTGACTTHW
SELEX
Jolma et al.(2013)
Nr2e1_1
0.838
0.629
Nr2e1
M03428_2.00
Mus musculus
RRGTCAWDAAGTCA
TGACTTHWTGACYY
SELEX
Jolma et al.(2013)
Nr2e1_2
0.838
0.629
NR2E1
M05585_2.00
Homo sapiens
NNAAGTCAN
NTGACTTNN
SELEX
Yin et al.(2017)
NR2E1_FL_HT-SELEX
0.838
0.629
NR2E1
M05586_2.00
Homo sapiens
NDAAGTCAN
NTGACTTHN
SELEX
Yin et al.(2017)
NR2E1_FL_Methyl-HT-SELEX
0.838
0.629
dsf
M06431_2.00
Drosophila melanogaster
AAAAGTCANH
DNTGACTTTT
B1H
Zhu et al.(2011)
dsf_SANGER_5_FBgn0015381
0.793
0.571
tll
M02408_2.00
Drosophila melanogaster
NRASGTCAANNN
NNNTTGACSTYN
PBM
Weirauch et al.(2014)
pTH5714
0.765
0.643
tll
M03932_2.00
Drosophila melanogaster
NRAGTCAAAAGTCA
TGACTTTTGACTYN
SELEX
Nitta et al.(2015)
tll_1
0.765
0.643
tll
M03933_2.00
Drosophila melanogaster
NRAGTCAADAAGTCA
TGACTTHTTGACTYN
SELEX
Nitta et al.(2015)
tll_2
0.765
0.643
tll
M06558_2.00
Drosophila melanogaster
WAAAGTCAAM
KTTGACTTTW
B1H
Mathelier et al.(2014)
MA0459.1
0.765
0.643
tll
M06424_2.00
Drosophila melanogaster
AAAGTYA
TRACTTT
B1H
Zhu et al.(2011)
tll_FlyReg_FBgn0003720
0.765
0.643
tll
M06425_2.00
Drosophila melanogaster
WAAAGTCAAM
KTTGACTTTW
B1H
Zhu et al.(2011)
tll_NAR_FBgn0003720
0.765
0.643
tll
M09688_2.00
Drosophila melanogaster
MAAAGTCAAH
DTTGACTTTK
Misc
Kulakovskiy et al.(2009)
tll
0.765
0.643
tll
M11190_2.00
Drosophila melanogaster
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
I$TLL_Q6
0.765
0.643
Rxrb
M02402_2.00
Mus musculus
VRGGTCAH
DTGACCYB
PBM
Weirauch et al.(2014)
pTH2861
0.752
0.571
RXRB
M03415_2.00
Homo sapiens
RRGGTCAAAGGTCA
TGACCTTTGACCYY
SELEX
Jolma et al.(2013)
RXRB_1
0.752
0.571
Rxrb
M03435_2.00
Mus musculus
GRGGTCAAAGGTCA
TGACCTTTGACCYC
SELEX
Jolma et al.(2013)
Rxrb_1
0.752
0.571
RXRB
M05681_2.00
Homo sapiens
RRGGTCAAAGGTCAN
NTGACCTTTGACCYY
SELEX
Yin et al.(2017)
RXRB_eDBD_HT-SELEX_1
0.752
0.571
RXRB
M05682_2.00
Homo sapiens
RRGGTCAYGACCYY
RRGGTCRTGACCYY
SELEX
Yin et al.(2017)
RXRB_eDBD_HT-SELEX_2
0.752
0.571
RXRB
M09297_2.00
Homo sapiens
DSAGGTCASD
HSTGACCTSH
Misc
Kulakovskiy et al.(2013)
RXRB_HUMAN.H11MO.0.C
0.752
0.571
Rxrb
M09330_2.00
Mus musculus
DSAGGTCASD
HSTGACCTSH
Misc
Kulakovskiy et al.(2013)
RXRB_MOUSE.H11MO.0.C
0.752
0.571
RXRB
M05683_2.00
Homo sapiens
RRGGTCAAAGGTCRN
NYGACCTTTGACCYY
SELEX
Yin et al.(2017)
RXRB_eDBD_Methyl-HT-SELEX_1
0.752
0.571
RXRB
M05684_2.00
Homo sapiens
RRGGTCRYGACCYY
RRGGTCRYGACCYY
SELEX
Yin et al.(2017)
RXRB_eDBD_Methyl-HT-SELEX_2
0.752
0.571
Rxra
M00181_2.00
Mus musculus
NRRGGTCANN
NNTGACCYYN
PBM
Badis et al.(2009)
Rxra_1035
0.747
0.557
RXRA
M03408_2.00
Homo sapiens
RRGGTCAAAGGTCA
TGACCTTTGACCYY
SELEX
Jolma et al.(2013)
RXRA_1
0.747
0.557
RXRA
M03409_2.00
Homo sapiens
RRGGTCATGACCYY
RRGGTCATGACCYY
SELEX
Jolma et al.(2013)
RXRA_2
0.747
0.557
RXRA
M03410_2.00
Homo sapiens
RRGGTCAAAGGTCA
TGACCTTTGACCYY
SELEX
Jolma et al.(2013)
RXRA_3
0.747
0.557
RXRA
M03411_2.00
Homo sapiens
RRGGTCATGACCYY
RRGGTCATGACCYY
SELEX
Jolma et al.(2013)
RXRA_4
0.747
0.557
Rxra
M03421_2.00
Mus musculus
RRGGTCAAAGGTCA
TGACCTTTGACCYY
SELEX
Jolma et al.(2013)
Rxra_1
0.747
0.557
Rxra
M03422_2.00
Mus musculus
RGGTCATGACCY
RGGTCATGACCY
SELEX
Jolma et al.(2013)
Rxra_2
0.747
0.557
RXRA
M05671_2.00
Homo sapiens
RRGGTCAAAGGTCAN
NTGACCTTTGACCYY
SELEX
Yin et al.(2017)
RXRA_eDBD_HT-SELEX
0.747
0.557
RXRA
M05882_2.00
Homo sapiens
VRGKTBAAAGGTYRH
DYRACCTTTVAMCYB
SMiLE-seq
Isakova et al.(2017)
RXRa
0.747
0.557
RXRA
M07993_2.00
Homo sapiens
NRRGGTCA
TGACCYYN
ChIP-seq
Gerstein et al.(2012)
H1-hESC_RXRA_HudsonAlpha
0.747
0.557
RXRA
M07994_2.00
Homo sapiens
DDNNMRRGGTCANDN
NHNTGACCYYKNNHH
ChIP-seq
Gerstein et al.(2012)
HepG2_RXRA_HudsonAlpha
0.747
0.557
RXRA
M09294_2.00
Homo sapiens
VDDDNDNNVRRRGGKCAVDV
BHBTGMCCYYYBNNHNHHHB
Misc
Kulakovskiy et al.(2013)
RXRA_HUMAN.H11MO.0.A
0.747
0.557
Rxra
M09306_2.00
Mus musculus
DDVNNNNNRAGKTCAAGGYCA
TGRCCTTGAMCTYNNNNNBHH
Misc
Kulakovskiy et al.(2013)
RXRA_MOUSE.H11MO.0.A
0.747
0.557
RXRA
M11182_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$RXRA_07
0.747
0.557
RXRA
M05672_2.00
Homo sapiens
RRGGTCAAAGGTCAH
DTGACCTTTGACCYY
SELEX
Yin et al.(2017)
RXRA_eDBD_Methyl-HT-SELEX
0.747
0.557
For this family, TFs with SR scores >
0.745
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
nDi.2.2.2.t01137
Nuclear receptor
6
75
VLCRVCGDRASGRHYGVQSCDGCRGFFKRSVRRSMRYECKDQKQCIVDVARRNQCQACRFRKCLAVSMNP
Links
Other
Nuclear receptor
family TFs
Other
Dirofilaria immitis
TFs
415 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy