PTRK_0000716700 (Parastrongyloides trichosuri)
Nuclear receptor

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00105 (zf-C4) IPR001628 PTRK_0000716700 T310016_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
nhr-6
M01298_2.00
Caenorhabditis elegans
AAAKGTCA

TGACMTTT
PBM
Lambert et al.(2019)
pTH9944
0.983 0.857
Hr38
M03939_2.00
Drosophila melanogaster
NAAAGGTCA

TGACCTTTN
SELEX
Nitta et al.(2015)
Hr38_1
0.966 0.786
Nr4a2
M00818_2.00
Mus musculus
AAAGGTCA

TGACCTTT
PBM
Weirauch et al.(2013)
pTH3467
0.961 0.829
NR4A2
M03383_2.00
Homo sapiens
AGGTCAHNNNDTGACCT

AGGTCAHNNNDTGACCT
SELEX
Jolma et al.(2013)
NR4A2_1
0.961 0.829
NR4A2
M03384_2.00
Homo sapiens
TGACCTTTAAAGGTCA

TGACCTTTAAAGGTCA
SELEX
Jolma et al.(2013)
NR4A2_2
0.961 0.829
NR4A2
M03385_2.00
Homo sapiens
NBTAAAGGTCA

TGACCTTTAVN
SELEX
Jolma et al.(2013)
NR4A2_3
0.961 0.829
NR4A2
M05639_2.00
Homo sapiens
NWAAKGTCAN

NTGACMTTWN
SELEX
Yin et al.(2017)
NR4A2_eDBD_HT-SELEX
0.961 0.829
NR4A2
M05881_2.00
Homo sapiens
NAAAKGTYA

TRACMTTTN
SMiLE-seq
Isakova et al.(2017)
NR4A2
0.961 0.829
NR4A2
M09286_2.00
Homo sapiens
RAAGGTCAV

BTGACCTTY
Misc
Kulakovskiy et al.(2013)
NR4A2_HUMAN.H11MO.0.C
0.961 0.829
Nr4a2
M09323_2.00
Mus musculus
RAAGGTCAV

BTGACCTTY
Misc
Kulakovskiy et al.(2013)
NR4A2_MOUSE.H11MO.0.C
0.961 0.829
NR4A2
M11151_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$NURR1_Q3_01
0.961 0.829
NR4A2
M11152_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$NURR1_Q3
0.961 0.829
NR4A2
M08461_2.00
Homo sapiens
RAGGTCAM

KTGACCTY
COMPILED
Mathelier et al.(2014)
MA0160.1
0.961 0.829
NR4A2
M05640_2.00
Homo sapiens
NAAAGGTCRN

NYGACCTTTN
SELEX
Yin et al.(2017)
NR4A2_eDBD_Methyl-HT-SELEX
0.961 0.829
NR4A1
M05601_2.00
Homo sapiens
NAAAGGTCAN

NTGACCTTTN
SELEX
Yin et al.(2017)
NR4A1_eDBD_HT-SELEX_1
0.930 0.771
NR4A1
M05602_2.00
Homo sapiens
NAAAGGTCAN

NTGACCTTTN
SELEX
Yin et al.(2017)
NR4A1_eDBD_HT-SELEX_2
0.930 0.771
NR4A1
M08153_2.00
Homo sapiens
NAAAGGTCAN

NTGACCTTTN
ChIP-seq
Mathelier et al.(2014)
MA1112.1
0.930 0.771
NR4A1
M09274_2.00
Homo sapiens
AAAKGBCAN

NTGVCMTTT
Misc
Kulakovskiy et al.(2013)
NR4A1_HUMAN.H11MO.0.A
0.930 0.771
Nr4a1
M09317_2.00
Mus musculus
NRAADGKCA

TGMCHTTYN
Misc
Kulakovskiy et al.(2013)
NR4A1_MOUSE.H11MO.0.B
0.930 0.771
NR4A1
M09608_2.00
Homo sapiens
NNDNAAAGGTCA

TGACCTTTNHNN
Misc
Heinz et al.(2010)
K562-NR4A1_GSE31363
0.930 0.771
NR4A1
M11132_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$NUR77_Q5_01
0.930 0.771
NR4A1
M11133_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$NUR77_Q5_02
0.930 0.771
NR4A1
M11134_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$NUR77_Q5
0.930 0.771
NR4A1
M05603_2.00
Homo sapiens
NAAAGGTCRN

NYGACCTTTN
SELEX
Yin et al.(2017)
NR4A1_eDBD_Methyl-HT-SELEX_1
0.930 0.771
NR4A1
M05604_2.00
Homo sapiens
NAAAGGTCRN

NYGACCTTTN
SELEX
Yin et al.(2017)
NR4A1_eDBD_Methyl-HT-SELEX_2
0.930 0.771
Q95WG3_ACRMI
M02424_2.00
Acropora millepora
NRAGGTCAN

NTGACCTYN
PBM
Weirauch et al.(2014)
pTH6144
0.870 0.629
Hr4
M06435_2.00
Drosophila melanogaster
AAGGTCA

TGACCTT
B1H
Zhu et al.(2011)
Hr4_SANGER_5_FBgn0023546
0.819 0.557
For this family, TFs with SR scores > 0.745 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PTRK_0000716700.1 Nuclear receptor 328 397

Links

Other Nuclear receptor family TFs
Other Parastrongyloides trichosuri TFs

Invalid Input OrderBy

414 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action