CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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scaffold19-EXSNAP2012.26
(
Pristionchus exspectatus
)
Nuclear receptor
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00105 (zf-C4)
IPR001628
scaffold19-EXSNAP2012.26
T310211_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
nhr-46
M00692_2.00
Caenorhabditis elegans
NNNDWNHRN
NYDNWHNNN
PBM
Narasimhan et al.(2015)
pTH9924
0.898
0.557
For this family, TFs with SR scores >
0.745
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
scaffold19-EXSNAP2012.26
Nuclear receptor
28
98
GHCVACNSTERVSIHYNAMSCHGCKAFFRRTIFERREYCCAVAGRCEITDENRNQCRACRFQKCVRGGMNP
Links
Other
Nuclear receptor
family TFs
Other
Pristionchus exspectatus
TFs
17 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
scaffold731-EXSNAP2012.1
Pristionchus exspectatus
scaffold731-EXSNAP2012.1
I
0.992
PPA17263
Pristionchus pacificus
PPA17263
I
0.992
scaffold303-EXSNAP2012.4
Pristionchus exspectatus
scaffold303-EXSNAP2012.4
I
0.987
CRE30546
Caenorhabditis remanei
CRE30546
I
0.898
CBG19870
Caenorhabditis briggsae
CBG19870
I
0.898
nhr-46
Caenorhabditis elegans
WBGene00003636
D
0.898
CRE28659
Caenorhabditis remanei
CRE28659
I
0.898
CJA19491
Caenorhabditis japonica
CJA19491
I
0.898
CBN16259
Caenorhabditis brenneri
CBN16259
I
0.898
CBN08077
Caenorhabditis brenneri
CBN08077
I
0.898
ANCCAN_22589
Ancylostoma caninum
ANCCAN_22589
I
0.881
PPA23171
Pristionchus pacificus
PPA23171
N
0.866
L898_g30036
Steinernema monticolum
L898_g30036
I
0.815
L889_g304
Steinernema feltiae
L889_g304
I
0.815
L596_g14937
Steinernema carpocapsae
L596_g14937
I
0.815
L892_g3686
Steinernema scapterisci
L892_g3686
I
0.815
L893_g13425
Steinernema glaseri
L893_g13425
I
0.812