SVUK_0002058501 (Strongylus vulgaris)
Nuclear receptor

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00105 (zf-C4) IPR001628 SVUK_0002058501 T310714_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
nhr-232
M00700_2.00
Caenorhabditis elegans
NNTNTDWYN

NRWHANANN
PBM
Narasimhan et al.(2015)
pTH10647
0.955 0.571
nhr-142
M00703_2.00
Caenorhabditis elegans
RGTCACAR

YTGTGACY
PBM
Narasimhan et al.(2015)
pTH10714
0.909 0.686
nhr-84
M02414_2.00
Caenorhabditis elegans
NRGTCACAAN

NTTGTGACYN
PBM
Weirauch et al.(2014)
pTH5828
0.773 0.571
For this family, TFs with SR scores > 0.745 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
SVUK_0002058501-mRNA-1 Nuclear receptor 12 96

Links

Other Nuclear receptor family TFs
Other Strongylus vulgaris TFs

115 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
nhr-142 Caenorhabditis elegans WBGene00018430 D 0.909
nhr-84 Caenorhabditis elegans WBGene00003674 D 0.773
nhr-232 Caenorhabditis elegans WBGene00012494 D 0.955
HCOI01190000 Haemonchus contortus HCOI01190000 I 0.955
HPBE_0001646201 Heligmosomoides bakeri HPBE_0001646201 I 0.885
HPLM_0000277901 Haemonchus placei HPLM_0000277901 I 0.992
HPLM_0000974301 Haemonchus placei HPLM_0000974301 I 0.955
HPLM_0000974401 Haemonchus placei HPLM_0000974401 I 0.841
L596_g14586 Steinernema carpocapsae L596_g14586 I 0.880
L596_g14588 Steinernema carpocapsae L596_g14588 I 0.929
L596_g14589 Steinernema carpocapsae L596_g14589 I 0.820
L596_g14590 Steinernema carpocapsae L596_g14590 I 0.803
L596_g14596 Steinernema carpocapsae L596_g14596 I 0.825
L889_g6692 Steinernema feltiae L889_g6692 I 0.838
HCOI00483700 Haemonchus contortus HCOI00483700 I 0.992
nhr-170 Caenorhabditis elegans WBGene00008309 I 0.876
nhr-213 Caenorhabditis elegans WBGene00011520 I 0.944
nhr-218 Caenorhabditis elegans WBGene00011750 I 0.779
nhr-231 Caenorhabditis elegans WBGene00012449 I 0.861
nhr-178 Caenorhabditis elegans WBGene00017510 I 0.929
GPLIN_000282900 Globodera pallida GPLIN_000282900 I 0.832
nhr-190 Caenorhabditis elegans WBGene00018622 I 0.790
Minc14668 Meloidogyne incognita Minc14668 I 0.864
ACOC_0000492601 Angiostrongylus costaricensis ACOC_0000492601 I 0.983
ANCCEY_07914 Ancylostoma ceylanicum ANCCEY_07914 I 0.952
ANCCEY_13226 Ancylostoma ceylanicum ANCCEY_13226 I 0.992
augustus_masked-nMf.1.1.scaf21762-processed-gene-0.0 Meloidogyne floridensis augustus_masked-nMf.1.1.scaf21762-processed-gene-0.0 I 0.834
L889_g6694 Steinernema feltiae L889_g6694 I 0.806
L889_g6695 Steinernema feltiae L889_g6695 I 0.847
L889_g6696 Steinernema feltiae L889_g6696 I 0.835
L898_g3512 Steinernema monticolum L898_g3512 I 0.857
L898_g3514 Steinernema monticolum L898_g3514 I 0.856
L898_g3515 Steinernema monticolum L898_g3515 I 0.826
L898_g4013 Steinernema monticolum L898_g4013 I 0.761
maker-nMf.1.1.scaf01765-snap-gene-0.13 Meloidogyne floridensis maker-nMf.1.1.scaf01765-snap-gene-0.13 I 0.752
MhA1_Contig1192.frz3.gene3 Meloidogyne hapla MhA1_Contig1192.frz3.gene3 I 0.853
NBR_0001218401 Nippostrongylus brasiliensis NBR_0001218401 I 0.991
NBR_0001834701 Nippostrongylus brasiliensis NBR_0001834701 I 0.924
NBR_0001834801 Nippostrongylus brasiliensis NBR_0001834801 I 0.827
PEQ_0000560101 Parascaris equorum PEQ_0000560101 I 0.876
scaffold31-EXSNAP2012.20 Pristionchus exspectatus scaffold31-EXSNAP2012.20 I 0.968
SMUV_0000721901 Syphacia muris SMUV_0000721901 I 0.765
L898_g21763 Steinernema monticolum L898_g21763 I 0.790
L898_g19021 Steinernema monticolum L898_g19021 I 0.771
L889_g6797 Steinernema feltiae L889_g6797 I 0.850
L889_g6798 Steinernema feltiae L889_g6798 I 0.863
L889_g6799 Steinernema feltiae L889_g6799 I 0.847
L892_g14817 Steinernema scapterisci L892_g14817 I 0.778
L892_g2780 Steinernema scapterisci L892_g2780 I 0.797
L892_g2781 Steinernema scapterisci L892_g2781 I 0.829
L892_g2782 Steinernema scapterisci L892_g2782 I 0.939
L893_g18992 Steinernema glaseri L893_g18992 I 0.801
L893_g18993 Steinernema glaseri L893_g18993 I 0.806
L893_g18997 Steinernema glaseri L893_g18997 I 0.918
L898_g12798 Steinernema monticolum L898_g12798 I 0.854
L898_g19019 Steinernema monticolum L898_g19019 I 0.876
SVUK_0001603001 Strongylus vulgaris SVUK_0001603001 I 0.989
nhr-133 Caenorhabditis elegans WBGene00003723 I 0.762
CBG01353 Caenorhabditis briggsae CBG01353 I 0.778
CBG22870 Caenorhabditis briggsae CBG22870 I 0.950
CBN01168 Caenorhabditis brenneri CBN01168 I 0.778
CBN12210 Caenorhabditis brenneri CBN12210 I 0.798
CBN13200 Caenorhabditis brenneri CBN13200 I 0.775
CBN13569 Caenorhabditis brenneri CBN13569 I 0.808
CBN21486 Caenorhabditis brenneri CBN21486 I 0.913
CBN23838 Caenorhabditis brenneri CBN23838 I 0.909
CBN28290 Caenorhabditis brenneri CBN28290 I 0.913
CJA02156 Caenorhabditis japonica CJA02156 I 0.798
CJA03481 Caenorhabditis japonica CJA03481 I 0.760
CJA03572 Caenorhabditis japonica CJA03572 I 0.810
CJA09697 Caenorhabditis japonica CJA09697 I 0.927
CBG20729 Caenorhabditis briggsae CBG20729 I 0.908
CBG20727 Caenorhabditis briggsae CBG20727 I 0.857
CBG04928 Caenorhabditis briggsae CBG04928 I 0.798
CBG06387 Caenorhabditis briggsae CBG06387 I 0.836
CBG06599 Caenorhabditis briggsae CBG06599 I 0.938
CBG06601 Caenorhabditis briggsae CBG06601 I 0.931
CBG06609 Caenorhabditis briggsae CBG06609 I 0.938
CBG06611 Caenorhabditis briggsae CBG06611 I 0.931
CBG09320 Caenorhabditis briggsae CBG09320 I 0.913
CBG09567 Caenorhabditis briggsae CBG09567 I 0.953
CBG14515 Caenorhabditis briggsae CBG14515 I 0.798
CBG15881 Caenorhabditis briggsae CBG15881 I 0.867
CBG16982 Caenorhabditis briggsae CBG16982 I 0.840
CBG19141 Caenorhabditis briggsae CBG19141 I 0.809
CJA19466 Caenorhabditis japonica CJA19466 I 0.820
CJA28065 Caenorhabditis japonica CJA28065 I 0.910
CRE15675 Caenorhabditis remanei CRE15675 I 0.876
CRE18430 Caenorhabditis remanei CRE18430 I 0.931
CRE18699 Caenorhabditis remanei CRE18699 I 0.762
CRE30948 Caenorhabditis remanei CRE30948 I 0.958
CRE31070 Caenorhabditis remanei CRE31070 I 0.913
PPA14290 Pristionchus pacificus PPA14290 I 0.756
nhr-44 Caenorhabditis elegans WBGene00003634 I 0.784
nhr-45 Caenorhabditis elegans WBGene00003635 I 0.798
nhr-54 Caenorhabditis elegans WBGene00003644 I 0.859
WBGene00003673 Caenorhabditis elegans WBGene00003673 I 0.751
nhr-102 Caenorhabditis elegans WBGene00003692 I 0.918
nhr-110 Caenorhabditis elegans WBGene00003700 I 0.801
CRE15644 Caenorhabditis remanei CRE15644 I 0.909
CRE15097 Caenorhabditis remanei CRE15097 I 0.772
CRE14848 Caenorhabditis remanei CRE14848 I 0.787
CRE00301 Caenorhabditis remanei CRE00301 I 0.798
CRE05044 Caenorhabditis remanei CRE05044 I 0.833
CRE05778 Caenorhabditis remanei CRE05778 I 0.760
CRE08690 Caenorhabditis remanei CRE08690 I 0.778
CRE08691 Caenorhabditis remanei CRE08691 I 0.933
CRE08749 Caenorhabditis remanei CRE08749 I 0.895
CRE08753 Caenorhabditis remanei CRE08753 I 0.759
CRE08754 Caenorhabditis remanei CRE08754 I 0.750
CRE10693 Caenorhabditis remanei CRE10693 I 0.772
CRE13011 Caenorhabditis remanei CRE13011 I 0.774
CRE14847 Caenorhabditis remanei CRE14847 I 0.745
nhr-130 Caenorhabditis elegans WBGene00003720 I 0.822
L892_g14834 Steinernema scapterisci L892_g14834 N 0.809